PDB: 37932 件ウェブページステータス検索Chemie searchBIRD

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2FF2	Crystal structure of Trypanosoma vivax nucleoside hydrolase co-crystallized with ImmucillinH 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, IAG-nucleoside hydrolase, ... 著者 Versees, W, Barlow, J, Steyaert, J. 登録日 2005-12-18 公開日 2006-05-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Transition-state Complex of the Purine-specific Nucleoside Hydrolase of T.vivax: Enzyme Conformational Changes and Implications for Catalysis. J.Mol.Biol., 359, 2006
2FF1	Crystal structure of Trypanosoma vivax nucleoside hydrolase soaked with ImmucillinH 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, IAG-nucleoside hydrolase 著者 Versees, W, Barlow, J, Steyaert, J. 登録日 2005-12-18 公開日 2006-05-23 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Transition-state Complex of the Purine-specific Nucleoside Hydrolase of T.vivax: Enzyme Conformational Changes and Implications for Catalysis. J.Mol.Biol., 359, 2006
1KIE	Inosine-adenosine-guanosine preferring nucleoside hydrolase from Trypanosoma vivax: Asp10Ala mutant in complex with 3-deaza-adenosine 分子名称: 3-DEAZA-ADENOSINE, CALCIUM ION, NICKEL (II) ION, ... 著者 Versees, W, Decanniere, K, Van Holsbeke, E, Devroede, N, Steyaert, J. 登録日 2001-12-03 公開日 2002-05-15 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Enzyme-substrate interactions in the purine-specific nucleoside hydrolase from Trypanosoma vivax. J.Biol.Chem., 277, 2002
1KIC	Inosine-adenosine-guanosine preferring nucleoside hydrolase from Trypanosoma vivax: Asp10Ala mutant in complex with inosine 分子名称: CALCIUM ION, INOSINE, NICKEL (II) ION, ... 著者 Versees, W, Decanniere, K, Van Holsbeke, E, Devroede, N, Steyaert, J. 登録日 2001-12-03 公開日 2002-05-15 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Enzyme-substrate interactions in the purine-specific nucleoside hydrolase from Trypanosoma vivax. J.Biol.Chem., 277, 2002
4JEP	Crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1) 分子名称: Nucleoside-triphosphatase 2 著者 Krug, U, Totzauer, R, Strater, N. 登録日 2013-02-27 公開日 2013-04-10 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 represents a conformational intermediate in the reductive activation mechanism of the tetrameric enzyme. Proteins, 81, 2013
2VPP	Drosophila melanogaster deoxyribonucleoside kinase successfully activates gemcitabine in transduced cancer cell lines 分子名称: DEOXYNUCLEOSIDE KINASE, GEMCITABINE, SULFATE ION 著者 Knecht, W, Mikkelsen, N.E, Clausen, A, Willer, M, Gojkovic, Z, Piskur, J. 登録日 2008-03-03 公開日 2009-03-24 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Drosophila Melanogaster Deoxyribonucleoside Kinase Activates Gemcitabine. Biochem.Biophys.Res.Commun., 382, 2009
4UOF	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP 分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.102 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4UOG	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP 分子名称: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4UOH	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4VHB	THIOCYANATE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP. 分子名称: PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, THIOCYANATE ION 著者 Bolognesi, M, Boffi, A, Coletta, M, Mozzarelli, A, Pesce, A, Tarricone, C, Ascenzi, P. 登録日 1999-03-11 公開日 1999-08-31 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study. J.Mol.Biol., 291, 1999
1F8Y	CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE 分子名称: 2'-deoxy-1-methyl-pseudouridine, NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE 著者 Armstrong, S.R, Cook, W.J, Short, S.A, Ealick, S.E. 登録日 2000-07-05 公開日 2000-08-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site. Structure, 4, 1996
6QA2	R80A MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: Nucleoside diphosphate kinase, SULFATE ION, TRIS(HYDROXYETHYL)AMINOMETHANE 著者 Dautant, A, Henri, J, Wales, T.E, Meyer, P, Engen, J.R, Georgescauld, F. 登録日 2018-12-18 公開日 2019-02-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Remodeling of the Binding Site of Nucleoside Diphosphate Kinase Revealed by X-ray Structure and H/D Exchange. Biochemistry, 58, 2019
6K3H	Crystallographic Analysis of Nucleoside Diphosphate Kinase (NDK) from Aspergillus Flavus 分子名称: Nucleoside diphosphate kinase 著者 Wang, Y, Wang, S, Wang, S.H. 登録日 2019-05-18 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.179 Å) 主引用文献 Molecular and structural basis of nucleoside diphosphate kinase-mediated regulation of spore and sclerotia development in the fungusAspergillus flavus. J.Biol.Chem., 294, 2019
1ZM7	Crystal structure of D. melanogaster deoxyribonucleoside kinase mutant N64D in complex with dTTP 分子名称: Deoxynucleoside kinase, MAGNESIUM ION, THYMIDINE-5'-TRIPHOSPHATE 著者 Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H. 登録日 2005-05-10 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D. Febs J., 272, 2005
1ZMX	Crystal structure of D. melanogaster deoxyribonucleoside kinase N64D mutant in complex with thymidine 分子名称: Deoxynucleoside kinase, SULFATE ION, THYMIDINE 著者 Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H. 登録日 2005-05-11 公開日 2005-05-24 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D. Febs J., 272, 2005
3AGR	Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum 分子名称: Nucleoside triphosphate hydrolase 著者 Matoba, K, Shiba, T, Seiki, M, Asai, T, Harada, S. 登録日 2010-04-06 公開日 2011-04-06 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum To be Published
3ZTS	Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE OF RADIATION DAMAGE) 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
3ZTR	Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE) 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
3ZTQ	Hexagonal crystal form P61 of the Aquifex aeolicus nucleoside diphosphate kinase 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-02-29 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
3ZTO	Orthorhombic crystal form C222 of the Aquifex aeolicus nucleoside diphosphate kinase 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 An Intersubunit Disulfide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus. Proteins, 80, 2012
5MQF	Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ATP-dependent RNA helicase DHX8, Cell division cycle 5-like protein, ... 著者 Bertram, K, Hartmuth, K, Kastner, B. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (5.9 Å) 主引用文献 Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature, 542, 2017
4ANC	CRYSTAL FORM I OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A. 登録日 2012-03-16 公開日 2013-03-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis. Plos One, 8, 2013
4AND	CRYSTAL FORM II OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A. 登録日 2012-03-16 公開日 2013-03-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.808 Å) 主引用文献 Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis. Plos One, 8, 2013
2AZ3	Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum in complex with CDP 分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D. 登録日 2005-09-09 公開日 2005-12-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum Febs Lett., 579, 2005
2AZ1	Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum 分子名称: CALCIUM ION, Nucleoside diphosphate kinase 著者 Besir, H, Zeth, K, Bracher, A, Heider, U, Ishibashi, M, Tokunaga, M, Oesterhelt, D. 登録日 2005-09-09 公開日 2005-12-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum Febs Lett., 579, 2005

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