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6XFG
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Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J23 immobile Holliday junction
分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2020-06-15
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.053 Å)
主引用文献The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
6XFW
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Self-assembly of a 3D DNA crystal lattice (4x5 junction version) containing the J24 immobile Holliday junction
分子名称: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*GP*GP*GP*TP*CP*TP*GP*C)-3'), ...
著者Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
登録日2020-06-16
公開日2021-07-14
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.053 Å)
主引用文献The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly.
Nat Commun, 13, 2022
5CHX
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BU of 5chx by Molmil
Crystal Structure of amino acids 1590-1657 of MYH7
分子名称: Xrcc4-MYH7-1590-1657
著者Korkmaz, N.E, Taylor, K.C, Andreas, M.P, Ajay, G, Heinz, N.T, Cui, Q, Rayment, I.
登録日2015-07-10
公開日2015-12-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A composite approach towards a complete model of the myosin rod.
Proteins, 84, 2016
3FE3
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BU of 3fe3 by Molmil
Crystal structure of the kinase MARK3/Par-1: T211A-S215A double mutant
分子名称: MAP/microtubule affinity-regulating kinase 3
著者Nugoor, C, Marx, A, Panneerselvam, S, Mandelkow, E.-M, Mandelkow, E.
登録日2008-11-27
公開日2008-12-16
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the kinase MARK3/Par-1: T211A-S215A double mutant
TO BE PUBLISHED
2WOK
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BU of 2wok by Molmil
Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with bradykinin
分子名称: CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2, GLYCEROL, Kininogen-1
著者Mackenzie, A.K, Valegard, K, Iqbal, A, Caines, M.E.C, Kershaw, N.J, Jensen, S.E, Schofield, C.J, Andersson, I.
登録日2009-07-26
公開日2009-12-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of an oligopeptide-binding protein from the biosynthetic pathway of the beta-lactamase inhibitor clavulanic acid.
J. Mol. Biol., 396, 2010
2BOG
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BU of 2bog by Molmil
Catalytic domain of endo-1,4-glucanase Cel6A mutant Y73S from Thermobifida fusca in complex with methyl cellobiosyl-4-thio-beta- cellobioside
分子名称: ENDOGLUCANASE E-2, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose-(1-4)-methyl beta-D-glucopyranoside
著者Larsson, A.M, Bergfors, T, Dultz, E, Irwin, D.C, Roos, A, Driguez, H, Wilson, D.B, Jones, T.A.
登録日2005-04-10
公開日2005-10-05
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Crystal Structure of Thermobifida Fusca Endoglucanase Cel6A in Complex with Substrate and Inhibitor: The Role of Tyrosine Y73 in Substrate Ring Distortion.
Biochemistry, 44, 2005
2JON
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BU of 2jon by Molmil
Solution structure of the C-terminal domain Ole e 9
分子名称: Beta-1,3-glucanase
著者Trevino, M.A, Palomares, O, Castrillo, I, Villalba, M, Rodriguez, R, Rico, M, Santoro, J, Bruix, M.
登録日2007-03-14
公開日2008-01-29
最終更新日2024-11-06
実験手法SOLUTION NMR
主引用文献Solution structure of the C-terminal domain of Ole e 9, a major allergen of olive pollen
Protein Sci., 17, 2008
6SI5
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BU of 6si5 by Molmil
T. cruzi FPPS in complex with 1-methyl-5-(4,5,6,7-tetrahydrothieno[3,2-c]pyridine-5-carbonyl)pyridin-2(1H)-one
分子名称: 5-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-ylcarbonyl)-1-methyl-pyridin-2-one, Farnesyl diphosphate synthase, SULFATE ION
著者Petrick, J.K, Muenzker, L, Schleberger, C, Cornaciu, I, Clavel, D, Marquez, J.A, Jahnke, W.
登録日2019-08-08
公開日2020-08-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.097 Å)
主引用文献Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery
Thesis, 2019
2C6G
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BU of 2c6g by Molmil
Membrane-bound glutamate carboxypeptidase II (GCPII) with bound glutamate
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Mesters, J.R, Barinka, C, Li, W, Tsukamoto, T, Majer, P, Slusher, B.S, Konvalinka, J, Hilgenfeld, R.
登録日2005-11-09
公開日2006-02-15
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of glutamate carboxypeptidase II, a drug target in neuronal damage and prostate cancer.
EMBO J., 25, 2006
8AD8
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BU of 8ad8 by Molmil
Flavin-dependent tryptophan 6-halogenase Thal in complex with a D-Trp-Ser dipeptide
分子名称: D-tryptophyl-L-serine, GLYCEROL, PHOSPHATE ION, ...
著者Gafe, S, Moritzer, A.C, Montua, N, Sewald, N, Niemann, H.H.
登録日2022-07-08
公開日2022-10-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Enzymatic Late-Stage Halogenation of Peptides.
Chembiochem, 24, 2023
9C10
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BU of 9c10 by Molmil
AMG 193, a clinical stage MTA-cooperative PRMT5 inhibitor, drives anti-tumor activity preclinically and in patients with MTAP-deleted cancers
分子名称: (4-amino-1,3-dihydrofuro[3,4-c][1,7]naphthyridin-8-yl){(3S)-3-[4-(trifluoromethyl)phenyl]morpholin-4-yl}methanone, 5'-DEOXY-5'-METHYLTHIOADENOSINE, DIMETHYL SULFOXIDE, ...
著者Ghimire-Rijal, S, Mukund, S.
登録日2024-05-28
公開日2024-10-02
最終更新日2025-01-22
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献AMG 193, a Clinical Stage MTA-Cooperative PRMT5 Inhibitor, Drives Antitumor Activity Preclinically and in Patients with MTAP-Deleted Cancers.
Cancer Discov, 15, 2025
6HYK
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BU of 6hyk by Molmil
NMR solution structure of the C/D box snoRNA U14
分子名称: RNA (31-MER)
著者Chagot, M.E, Quinternet, M, Rothe, B, Charpentier, B, Coutant, J, Manival, X, Lebars, I.
登録日2018-10-22
公開日2019-04-24
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献The yeast C/D box snoRNA U14 adopts a "weak" K-turn like conformation recognized by the Snu13 core protein in solution.
Biochimie, 164, 2019
6I1Y
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BU of 6i1y by Molmil
Vibrio vulnificus EpsD
分子名称: General secretion pathway protein GspD
著者Contreras-Martel, C, Farias Estrozi, L.
登録日2018-10-30
公開日2019-04-10
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure and assembly of pilotin-dependent and -independent secretins of the type II secretion system.
Plos Pathog., 15, 2019
9HS7
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BU of 9hs7 by Molmil
Anti-HIV-1 chimeric miniprotein mimicking the N-terminal half of gp41 NHR with an extended region targeting the MPER
分子名称: DI(HYDROXYETHYL)ETHER, Transmembrane protein gp41
著者Camara-Artigas, A, Gavira, J.A, Conejero-Lara, F, Polo-Megias, D, Salinas-Garcia, M.C.
登録日2024-12-18
公開日2025-04-30
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献Potent HIV-1 miniprotein inhibitors targeting highly conserved gp41 epitopes.
Int.J.Biol.Macromol., 310, 2025
8A0D
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BU of 8a0d by Molmil
Crystal structure of the major guinea pig allergen Cav p 1.0101 part of the lipocalin family
分子名称: Allergen lipocalin Cav p 1 isoform 1
著者Herman, R, Charlier, P, Janssen-Weets, B, Hilger, C, Swiontek, K.
登録日2022-05-27
公開日2022-08-03
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.685 Å)
主引用文献Mammalian derived lipocalin and secretoglobin respiratory allergens strongly bind ligands with potentially immune modulating properties.
Front Allergy, 3, 2022
6I8V
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BU of 6i8v by Molmil
KtrC with ATP bound
分子名称: 1,4-BUTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
著者Rocha, R, Morais-Cabral, J.H.
登録日2018-11-21
公開日2019-10-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.991 Å)
主引用文献Characterization of the molecular properties of KtrC, a second RCK domain that regulates a Ktr channel in Bacillus subtilis.
J.Struct.Biol., 205, 2019
4K37
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Native anSMEcpe with bound AdoMet
分子名称: Anaerobic sulfatase-maturating enzyme, CHLORIDE ION, GLYCEROL, ...
著者Goldman, P.J, Drennan, C.L.
登録日2013-04-10
公開日2013-05-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献X-ray structure of an AdoMet radical activase reveals an anaerobic solution for formylglycine posttranslational modification.
Proc.Natl.Acad.Sci.USA, 110, 2013
7U72
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BU of 7u72 by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
2BPR
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BU of 2bpr by Molmil
NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, 25 STRUCTURES
分子名称: DNAK
著者Wang, H, Kurochkin, A.V, Pang, Y, Hu, W, Flynn, G.C, Zuiderweg, E.R.P.
登録日1998-08-11
公開日1999-03-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction.
Biochemistry, 37, 1998
7U76
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BU of 7u76 by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 0.5 mM Mn2+ for 1800s then with 10 mM Mn2+ for 300s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*())-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7C
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BU of 7u7c by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 1.0 mM Mg2+ for 300s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*G)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7J
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BU of 7u7j by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 10.0 mM Mn2+ for 300s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*G)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7W
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Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 1.0 mM Mg2+ for 600s
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
1CEJ
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BU of 1cej by Molmil
SOLUTION STRUCTURE OF AN EGF MODULE PAIR FROM THE PLASMODIUM FALCIPARUM MEROZOITE SURFACE PROTEIN 1
分子名称: PROTEIN (MEROZOITE SURFACE PROTEIN 1)
著者Morgan, W.D, Birdsall, B, Frenkiel, T.A, Gradwell, M.G, Burghaus, P.A, Syed, S.E.H, Uthaipibull, C, Holder, A.A, Feeney, J.
登録日1999-03-08
公開日1999-05-28
最終更新日2024-11-06
実験手法SOLUTION NMR
主引用文献Solution structure of an EGF module pair from the Plasmodium falciparum merozoite surface protein 1.
J.Mol.Biol., 289, 1999
9AYR
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BU of 9ayr by Molmil
Structure of a Ric1-Rgp1-Rab6 activation intermediate
分子名称: GTP-binding protein YPT6, Guanine nucleotide exchange factor subunit RGP1, Guanine nucleotide exchange factor subunit RIC1
著者Feathers, J.R, Fromme, J.C.
登録日2024-03-08
公開日2024-12-11
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for Rab6 activation by the Ric1-Rgp1 complex.
Nat Commun, 15, 2024

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