PDB: 71589 件ウェブページステータス検索Chemie searchBIRD

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4DTJ	RB69 DNA Polymerase Ternary Complex with dTTP Opposite an Abasic Site and ddT/dA as the Penultimate Base-pair 分子名称: CALCIUM ION, DNA polymerase, DNA primer, ... 著者 Xia, S, Wang, J, Konigsberg, W.H. 登録日 2012-02-21 公開日 2012-06-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Contribution of Partial Charge Interactions and Base Stacking to the Efficiency of Primer Extension at and beyond Abasic Sites in DNA. Biochemistry, 51, 2012
4DU3	RB69 DNA Polymerase Ternary Complex with dDTP Opposite dT with 3-Deaza-adenine at the N-1 Position of Template Strand 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Wang, J, Konigsberg, W.H. 登録日 2012-02-21 公開日 2012-05-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Probing minor groove hydrogen bonding interactions between RB69 DNA polymerase and DNA. Biochemistry, 51, 2012
4DV5	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin 分子名称: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2012-02-22 公開日 2013-02-27 実験手法 X-RAY DIFFRACTION (3.683 Å) 主引用文献 A structural basis for streptomycin resistance To be Published
4EE1	The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese 分子名称: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-28 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EDK	The structure of the S. aureus DnaG RNA Polymerase Domain bound to GTP and Manganese 分子名称: BENZAMIDINE, DNA primase, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
6NW4	Evolution of a computationally designed Kemp eliminase 分子名称: 6-NITROBENZOTRIAZOLE, Indole-3-glycerol phosphate synthase, SULFATE ION 著者 Bunzel, A, Mittl, P, Hilvert, D. 登録日 2019-02-06 公開日 2019-07-24 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Emergence of a Negative Activation Heat Capacity during Evolution of a Designed Enzyme. J.Am.Chem.Soc., 141, 2019
4JV7	Co-crystal structure of MDM2 with inhibitor (2S,5R,6S)-2-benzyl-5,6-bis(4-bromophenyl)-4-methylmorpholin-3-one 分子名称: (2S,5R,6S)-2-benzyl-5,6-bis(4-bromophenyl)-4-methylmorpholin-3-one, E3 ubiquitin-protein ligase Mdm2, SULFATE ION 著者 Huang, X, Gonzalez-Lopez de Turiso, F, Sun, D, Yosup, R, Bartberger, M.D, Beck, H.P, Cannon, J, Shaffer, P, Oliner, J.D, Olson, S.H, Medina, J.C. 登録日 2013-03-25 公開日 2013-05-01 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Rational Design and Binding Mode Duality of MDM2-p53 Inhibitors. J.Med.Chem., 56, 2013
4JVR	Co-crystal structure of MDM2 with inhibitor (2'S,3R,4'S,5'R)-N-(2-aminoethyl)-6-chloro-4'-(3-chloro-2-fluorophenyl)-2'-(2,2-dimethylpropyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxamide 分子名称: (2'S,3R,4'S,5'R)-N-(2-aminoethyl)-6-chloro-4'-(3-chloro-2-fluorophenyl)-2'-(2,2-dimethylpropyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxamide, E3 ubiquitin-protein ligase Mdm2 著者 Huang, X, Gonzalez-Lopez de Turiso, F, Sun, D, Yosup, R, Bartberger, M.D, Beck, H.P, Cannon, J, Shaffer, P, Oliner, J.D, Olson, S.H, Medina, J.C. 登録日 2013-03-26 公開日 2013-05-01 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Rational Design and Binding Mode Duality of MDM2-p53 Inhibitors. J.Med.Chem., 56, 2013
4J73	Crystal structure of beta'-COP/p25 complex 分子名称: Coatomer subunit beta', Transmembrane emp24 domain-containing protein 9 著者 Ma, W, Goldberg, J. 登録日 2013-02-12 公開日 2013-03-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.439 Å) 主引用文献 Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J., 32, 2013
4EJ1	Binding of Nb113 camelid antibody fragment with the binary DHFR:folate complex 分子名称: Dihydrofolate reductase, FOLIC ACID, Nb113 camelid antibody fragment, ... 著者 Oyen, D, Srinivasan, V. 登録日 2012-04-06 公開日 2013-04-24 最終更新日 2013-10-30 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Mechanistic analysis of allosteric and non-allosteric effects arising from nanobody binding to two epitopes of the dihyrofolate reductase of Escherichia coli. Biochim.Biophys.Acta, 1834, 2013
4J82	Crystal structure of beta'-COP/Insig-2 complex 分子名称: Coatomer subunit beta', INSIG2 著者 Ma, W, Goldberg, J. 登録日 2013-02-14 公開日 2013-03-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.461 Å) 主引用文献 Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J., 32, 2013
3RVU	Structure of 4C1 Fab in C2221 space group 分子名称: 4C1 Fab - heavy chain, 4C1 Fab - light chain 著者 Chruszcz, M, Vailes, L.D, Chapman, M.D, Pomes, A, Minor, W. 登録日 2011-05-06 公開日 2012-01-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Molecular determinants for antibody binding on group 1 house dust mite allergens. J.Biol.Chem., 287, 2012
4J77	Crystal structure of beta'-COP/hWbp1 complex 分子名称: Coatomer subunit beta', Wbp1 著者 Ma, W, Goldberg, J. 登録日 2013-02-12 公開日 2013-03-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.756 Å) 主引用文献 Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J., 32, 2013
4DTA	Crystal Structure of F95M Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine 分子名称: ADENOSINE, APH(2'')-Id 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
4DTN	RB69 DNA Polymerase Ternary Complex with dATP Opposite an Abasic Site and ddA/dT as the Penultimate Base-pair 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Wang, J, Konigsberg, W.H. 登録日 2012-02-21 公開日 2012-06-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Contribution of Partial Charge Interactions and Base Stacking to the Efficiency of Primer Extension at and beyond Abasic Sites in DNA. Biochemistry, 51, 2012
4J81	Crystal structure of beta'-COP/Insig-1 complex 分子名称: Coatomer subunit beta', Insulin-induced gene 1 protein 著者 Ma, W, Goldberg, J. 登録日 2013-02-14 公開日 2013-03-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.745 Å) 主引用文献 Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J., 32, 2013
4DT9	Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine 分子名称: APH(2'')-Id, GUANOSINE 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
4DTS	RB69 DNA Polymerase Ternary Complex with dCTP Opposite an Abasic Site and ddC/dG as the Penultimate Base-pair 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Wang, J, Konigsberg, W.H. 登録日 2012-02-21 公開日 2012-06-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Contribution of Partial Charge Interactions and Base Stacking to the Efficiency of Primer Extension at and beyond Abasic Sites in DNA. Biochemistry, 51, 2012
4JVJ	Crystal structure of human FPPS in complex with magnesium, CL01131, and sulfate 分子名称: ({[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid), Farnesyl pyrophosphate synthase, MAGNESIUM ION, ... 著者 Park, J, Leung, C.-Y, Tsantrizos, Y.S, Berghuis, A.M. 登録日 2013-03-25 公開日 2014-01-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Thienopyrimidine Bisphosphonate (ThPBP) Inhibitors of the Human Farnesyl Pyrophosphate Synthase: Optimization and Characterization of the Mode of Inhibition. J.Med.Chem., 56, 2013
4J86	Crystal structure of beta'-COP/yWbp1 complex 分子名称: Coatomer subunit beta', Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 著者 Ma, W, Goldberg, J. 登録日 2013-02-14 公開日 2013-03-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Rules for the recognition of dilysine retrieval motifs by coatomer. Embo J., 32, 2013
4DUI	DARPIN D1 binding to tubulin beta chain (not in complex) 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1 著者 Pecqueur, L, Duellberg, C, Dreier, B, Wang, Q, Jiang, C, Pluckthun, A, Surrey, T, Gigant, B, Knossow, M. 登録日 2012-02-22 公開日 2013-02-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 An Anti-Tubulin Darpin Caps the Microtubule Plus-End To be Published
4DTU	RB69 DNA Polymerase Ternary Complex with dGTP Opposite an Abasic Site and ddC/dG as the Penultimate Base-pair 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Wang, J, Konigsberg, W.H. 登録日 2012-02-21 公開日 2012-06-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Contribution of Partial Charge Interactions and Base Stacking to the Efficiency of Primer Extension at and beyond Abasic Sites in DNA. Biochemistry, 51, 2012
4DUZ	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin 分子名称: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2012-02-22 公開日 2013-02-27 実験手法 X-RAY DIFFRACTION (3.651 Å) 主引用文献 A structural basis for streptomycin resistance To be Published
4DUY	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C 分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2012-02-22 公開日 2013-02-27 実験手法 X-RAY DIFFRACTION (3.386 Å) 主引用文献 A structural basis for streptomycin resistance To be Published
4DV4	Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G 分子名称: 16S rRNA, MAGNESIUM ION, ZINC ION, ... 著者 Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2012-02-22 公開日 2013-02-27 実験手法 X-RAY DIFFRACTION (3.651 Å) 主引用文献 A structural basis for streptomycin resistance To be Published

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