PDB: 97138 件ウェブページステータス検索Chemie searchBIRD

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8E2C	N-terminal domain of S. aureus GpsB in complex with PBP4 fragment 分子名称: Cell cycle protein GpsB, PBP4 著者 Sacco, M, Chen, Y. 登録日 2022-08-14 公開日 2023-08-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB. Elife, 13, 2024
5LHA	Amine transaminase crystal structure from an uncultivated Pseudomonas species in the PMP-bound form 分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, OMEGA TRANSAMINASE 著者 Reddem, E, Thunnissen, A.M.W.H. 登録日 2016-07-10 公開日 2017-03-22 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Explaining Operational Instability of Amine Transaminases: Substrate-Induced Inactivation Mechanism and Influence of Quaternary Structure on Enzyme-Cofactor Intermediate Stability. Acs Catalysis, 7, 2017
1COL	REFINED STRUCTURE OF THE PORE-FORMING DOMAIN OF COLICIN A AT 2.4 ANGSTROMS RESOLUTION 分子名称: COLICIN A 著者 Parker, M.W, Postma, J.P.M, Pattus, F, Tucker, A.D, Tsernoglou, D. 登録日 1991-07-06 公開日 1992-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Refined structure of the pore-forming domain of colicin A at 2.4 A resolution. J.Mol.Biol., 224, 1992
2V9R	First and second Ig domains from human Robo1 (Form 2) 分子名称: ROUNDABOUT HOMOLOG 1, SULFATE ION 著者 Morlot, C, Cusack, S, McCarthy, A.A. 登録日 2007-08-25 公開日 2007-09-25 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Insights Into the Slit-Robo Complex. Proc.Natl.Acad.Sci.USA, 104, 2007
5LH9	Amine transaminase crystal structure from an uncultivated Pseudomonas species in the PLP-bound (internal aldimine) form 分子名称: OMEGA TRANSAMINASE, PYRIDOXAL-5'-PHOSPHATE 著者 Reddem, E, Thunnissen, A.M.W.H. 登録日 2016-07-10 公開日 2017-03-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Explaining Operational Instability of Amine Transaminases: Substrate-Induced Inactivation Mechanism and Influence of Quaternary Structure on Enzyme-Cofactor Intermediate Stability. Acs Catalysis, 7, 2017
8EEA	Structure of E.coli Septu (PtuAB) complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, PtuA, PtuB 著者 Shen, Z.F, Fu, T.M. 登録日 2022-09-06 公開日 2023-12-27 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense. Nat.Struct.Mol.Biol., 31, 2024
8EE7	Structure of focused PtuA(dimer) and PtuB(monomer) complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, PtuA, PtuB 著者 Shen, Z.F, Fu, T.M. 登録日 2022-09-06 公開日 2024-01-03 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense. Nat.Struct.Mol.Biol., 31, 2024
8EE4	Structure of PtuA 分子名称: ADENOSINE-5'-TRIPHOSPHATE, PtuA 著者 Shen, Z.F, Fu, T.M. 登録日 2022-09-06 公開日 2024-01-03 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense. Nat.Struct.Mol.Biol., 31, 2024
4GZ8	Mouse Semaphorin 3A, domains Sema-PSI-IG 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... 著者 Janssen, B.J.C, Malinauskas, T, Siebold, C, Jones, E.Y. 登録日 2012-09-06 公開日 2012-10-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Neuropilins lock secreted semaphorins onto plexins in a ternary signaling complex. Nat.Struct.Mol.Biol., 19, 2012
4TZW	Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization 分子名称: Ribosome-associated protein L7Ae-like, STRONTIUM ION, T-box Stem I, ... 著者 Zhang, J, Ferre-D'Amare, A.R. 登録日 2014-07-11 公開日 2014-09-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (4.671 Å) 主引用文献 Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration. Structure, 22, 2014
8SZ6	PmHMGR bound to mevaldehyde and CoA 分子名称: (3R)-3,5,5-trihydroxy-3-methylpentanoic acid, 3-hydroxy-3-methylglutaryl-coenzyme A reductase, Mevaldyl-Coenzyme A, ... 著者 Purohit, V, Stauffacher, C.V, Steussy, C.N. 登録日 2023-05-27 公開日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 pH-dependent reaction triggering in PmHMGR crystals for time-resolved crystallography. Biophys.J., 123, 2024
4GZ9	Mouse Neuropilin-1, extracellular domains 1-4 (a1a2b1b2) 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Janssen, B.J.C, Malinauskas, T, Siebold, C, Jones, E.Y. 登録日 2012-09-06 公開日 2012-10-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Neuropilins lock secreted semaphorins onto plexins in a ternary signaling complex. Nat.Struct.Mol.Biol., 19, 2012
6I0L	Crystal structure of human carbonic anhydrase I in complex with the 1-[4-chloro-3-(trifluoromethyl)phenyl]-3-[2-(4-sulfamoylphenyl)ethyl]urea inhibitor 分子名称: 1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[2-(4-sulfamoylphenyl)ethyl]urea, ACETATE ION, Carbonic anhydrase 1, ... 著者 Ferraroni, M, Supuran, C.T, Bozdag, M, Chiapponi, D. 登録日 2018-10-26 公開日 2019-11-20 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Carbonic anhydrase inhibitors based on sorafenib scaffold: Design, synthesis, crystallographic investigation and effects on primary breast cancer cells. Eur.J.Med.Chem., 182, 2019
1MAK	SOLUTION STRUCTURE OF AN ISOLATED ANTIBODY VL DOMAIN 分子名称: IGG2A-KAPPA 26-10 FV (LIGHT CHAIN) 著者 Constantine, K.L, Friedrichs, M.S, Metzler, W.J, Wittekind, M, Hensley, P, Mueller, L. 登録日 1993-09-16 公開日 1994-01-31 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of an isolated antibody VL domain. J.Mol.Biol., 236, 1994
4V68	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schuette, J.-C, Spahn, C.M.T. 登録日 2008-12-11 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 GTPase activation of elongation factor EF-Tu by the ribosome during decoding Embo J., 28, 2009
2V35	Porcine Pancreatic Elastase in complex with inhibitor JM54 分子名称: (2R)-3-{[(BENZYLAMINO)CARBONYL]AMINO}-2-HYDROXYPROPANOIC ACID, ELASTASE-1, GLYCEROL, ... 著者 Oliveira, T.F, Mulchande, J, Martins, L, Moreira, R, Iley, J, Archer, M. 登録日 2007-06-12 公開日 2008-06-24 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 The Efficiency of C-4 Substituents in Activating the Beta-Lactam Scaffold Towards Serine Proteases and Hydroxide Ion. Org.Biomol.Chem., 5, 2007
4H3H	Crystal structure of a ternary complex of human symplekin NTD, human Ssu72 and a RNA poymerase II CTD peptide phosphorylated at SER-7 分子名称: PHOSPHATE ION, Pol II CTD peptide, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, ... 著者 Xiang, K, Tong, L. 登録日 2012-09-13 公開日 2012-10-31 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 An unexpected binding mode for a Pol II CTD peptide phosphorylated at Ser7 in the active site of the CTD phosphatase Ssu72. Genes Dev., 26, 2012
1VBG	Pyruvate Phosphate Dikinase from Maize 分子名称: MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase 著者 Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-02-26 公開日 2005-03-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion Biochemistry, 44, 2005
7ENL	MECHANISM OF ENOLASE: THE CRYSTAL STRUCTURE OF ENOLASE-MG2+-PHOSPHOGLYCERATE(SLASH) PHOSPHOENOLPYRUVATE COMPLEX AT 2.2-ANGSTROMS RESOLUTION 分子名称: 2-PHOSPHOGLYCERIC ACID, ENOLASE, MAGNESIUM ION 著者 Lebioda, L, Stec, B. 登録日 1990-11-13 公開日 1992-04-15 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mechanism of enolase: the crystal structure of enolase-Mg2(+)-2-phosphoglycerate/phosphoenolpyruvate complex at 2.2-A resolution. Biochemistry, 30, 1991
4FC7	Studies on DCR shed new light on peroxisomal beta-oxidation: Crystal structure of the ternary complex of pDCR 分子名称: COENZYME A, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Peroxisomal 2,4-dienoyl-CoA reductase 著者 Hua, T, Wu, D, Wang, J, Shaw, N, Liu, Z.-J. 登録日 2012-05-24 公開日 2012-07-04 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Studies of human 2,4-dienoyl CoA reductase shed new light on peroxisomal beta-oxidation of unsaturated fatty acids J.Biol.Chem., 287, 2012
4FC6	Studies on DCR shed new light on peroxisomal beta-oxidation: Crystal structure of the ternary complex of pDCR 分子名称: HEXANOYL-COENZYME A, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Peroxisomal 2,4-dienoyl-CoA reductase 著者 Hua, T, Wu, D, Wang, J, Shaw, N, Liu, Z.-J. 登録日 2012-05-24 公開日 2012-07-04 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Studies of human 2,4-dienoyl CoA reductase shed new light on peroxisomal beta-oxidation of unsaturated fatty acids J.Biol.Chem., 287, 2012
3AU6	DNA polymerase X from Thermus thermophilus HB8 ternary complex with primer/template DNA and ddGTP 分子名称: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*AP*GP*TP*AP*TP*(DDG))-3', 5'-D(*CP*GP*GP*CP*CP*AP*TP*AP*CP*TP*G)-3', ... 著者 Nakane, S, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2011-01-28 公開日 2012-01-25 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012
2OP3	The structure of cathepsin S with a novel 2-arylphenoxyacetaldehyde inhibitor derived by the Substrate Activity Screening (SAS) method 分子名称: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, 2-[(2',3',4'-TRIFLUOROBIPHENYL-2-YL)OXY]ETHANOL, Cathepsin S, ... 著者 Spraggon, G, Inagaki, H, Tsuruoka, H, Hornsby, M, Lesley, S.A, Ellman, J.A. 登録日 2007-01-26 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Characterization and optimization of selective, nonpeptidic inhibitors of cathepsin S with an unprecedented binding mode. J.Med.Chem., 50, 2007
4H4L	Crystal Structure of ternary complex of HutP(HutP-L-His-Zn) 分子名称: HISTIDINE, Hut operon positive regulatory protein, ZINC ION 著者 Dhakshnamoorthy, B, Misono, T.S, Mizuno, H, Kumar, P.K.R. 登録日 2012-09-17 公開日 2013-09-04 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Alternative binding modes of l-histidine guided by metal ions for the activation of the antiterminator protein HutP of Bacillus subtilis. J.Struct.Biol., 183, 2013
3RB4	Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... 著者 Rechkoblit, O, Patel, D.J. 登録日 2011-03-28 公開日 2011-06-15 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.805 Å) 主引用文献 Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011

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