PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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1V3O	Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex 分子名称: 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION 著者 Kondo, J, Umeda, S, Sunami, T, Takenaka, A. 登録日 2003-11-03 公開日 2004-06-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
1XCE	Helica Structure of DNA by Design: The T(GGGG)T Hexad Alignment 分子名称: 5'-D(*GP*CP*GP*GP*TP*TP*GP*GP*AP*T)-3' 著者 Webba da Silva, M. 登録日 2004-09-01 公開日 2005-02-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Experimental Demonstration of T:(G:G:G):T Hexad and T:A:A:T Tetrad Alignments within a DNA Quadruplex Stem Biochemistry, 44, 2005
7W9N	THE STRUCTURE OF OBA33-OTA COMPLEX 分子名称: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, OTA DNA APTAMER (33-MER) 著者 Xu, G.H, Li, C.G. 登録日 2021-12-10 公開日 2022-01-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Insights into the Mechanism of High-Affinity Binding of Ochratoxin A by a DNA Aptamer. J.Am.Chem.Soc., 144, 2022
1V3P	Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet 分子名称: 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION 著者 Kondo, J, Umeda, S, Sunami, T, Takenaka, A. 登録日 2003-11-03 公開日 2004-06-08 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
1V3N	Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex 分子名称: 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION 著者 Kondo, J, Umeda, S, Sunami, T, Takenaka, A. 登録日 2003-11-03 公開日 2004-06-08 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
3QSC	The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a copper complex) 分子名称: 5'-D(*AP*GP*GP*GP*TP*(BRU)P*AP*GP*GP*GP*TP*T)-3', POTASSIUM ION, [2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappaO}(2-)]copper (II) 著者 Campbell, N.H, Abd Karim, N.H, Parkinson, G.N, Vilar, R, Neidle, S. 登録日 2011-02-21 公開日 2011-12-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes. J.Med.Chem., 55, 2012
3QSF	The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a nickel complex) 分子名称: 5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*T)-3', POTASSIUM ION, [2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappa O}(2-)]nickel (II) 著者 Campbell, N.H, Abd Karim, N.H, Parkinson, G.N, Vilar, R, Neidle, S. 登録日 2011-02-21 公開日 2011-12-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes. J.Med.Chem., 55, 2012
3EY3	A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*(USM)P*CP*GP*CP*G)-3', STRONTIUM ION 著者 Egli, M, Pallan, P.S. 登録日 2008-10-17 公開日 2009-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution. Chem.Commun.(Camb.), 15, 2009
4BK0	Crystal structure of the KIX domain of human RECQL5 (domain-swapped dimer) 分子名称: ATP-DEPENDENT DNA HELICASE Q5, DI(HYDROXYETHYL)ETHER 著者 Kassube, S.A, Jinek, M, Fang, J, Tsutakawa, S, Nogales, E. 登録日 2013-04-21 公開日 2013-06-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Mimicry in Transcription Regulation of Human RNA Polymerase II by the DNA Helicase Recql5 Nat.Struct.Mol.Biol., 20, 2013
3GSJ	A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch 分子名称: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', CHLORIDE ION, SODIUM ION, ... 著者 Zeglis, B.M, Pierre, V.C, Kaiser, J.T, Barton, J.K. 登録日 2009-03-27 公開日 2009-05-19 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A bulky rhodium complex bound to an adenosine-adenosine DNA mismatch: general architecture of the metalloinsertion binding mode Biochemistry, 48, 2009
1VPB	CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF DNA GYRASE (BT3649) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION 分子名称: 1,2-ETHANEDIOL, putative modulator of DNA gyrase 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-10-15 公開日 2004-11-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution To be Published
3GSK	A Bulky Rhodium Complex Bound to an Adenosine-Adenosine DNA Mismatch 分子名称: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', CACODYLATE ION, bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+) 著者 Zeglis, B.M, Pierre, V.C, Kaiser, J.T, Barton, J.K. 登録日 2009-03-27 公開日 2009-05-19 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 A bulky rhodium complex bound to an adenosine-adenosine DNA mismatch: general architecture of the metalloinsertion binding mode Biochemistry, 48, 2009
4BU1	Crystal structure of Rad4 BRCT1,2 in complex with a Crb2 phosphopeptide 分子名称: 1,2-ETHANEDIOL, DNA REPAIR PROTEIN RHP9, GLYCEROL, ... 著者 Qu, M, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H. 登録日 2013-06-19 公開日 2013-10-09 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.). Mol.Cell, 51, 2013
4BU0	Crystal structure of Rad4 BRCT1,2 in complex with a Crb2 phosphopeptide 分子名称: ACETATE ION, DNA REPAIR PROTEIN RHP9, GLYCEROL, ... 著者 Qu, M, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H. 登録日 2013-06-19 公開日 2013-10-09 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.). Mol.Cell, 51, 2013
3HXO	Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding 分子名称: Aptamer ARC1172, von Willebrand factor 著者 Huang, R.H, Sadler, J.E, Fremont, D.H, Diener, J.L, Schaub, R.G. 登録日 2009-06-21 公開日 2009-11-17 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A structural explanation for the antithrombotic activity of ARC1172, a DNA aptamer that binds von Willebrand factor domain A1. Structure, 17, 2009
3HXQ	Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding 分子名称: Aptamer ARC1172, von Willebrand Factor 著者 Huang, R.H, Sadler, J.E, Fremont, D.H, Diener, J.L, Schaub, R.G. 登録日 2009-06-21 公開日 2009-11-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 A structural explanation for the antithrombotic activity of ARC1172, a DNA aptamer that binds von Willebrand factor domain A1. Structure, 17, 2009
3EY2	A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution 分子名称: 5'-D(*GP*CP*GP*TP*AP*(USM)P*AP*CP*GP*C)-3', N-methylpropane-1,3-diamine 著者 Egli, M, Pallan, P.S. 登録日 2008-10-17 公開日 2009-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.04 Å) 主引用文献 A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution. Chem.Commun.(Camb.), 15, 2009
2L89	Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA 分子名称: PWWP domain-containing protein 1 著者 Qiu, Y, Zhang, J, Zhang, W. 登録日 2011-01-07 公開日 2011-12-21 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA Biochem.J., 2011
1YJ5	Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme 分子名称: 5' polynucleotide kinase-3' phosphatase FHA domain, 5' polynucleotide kinase-3' phosphatase catalytic domain, SULFATE ION 著者 Bernstein, N.K, Williams, R.S, Rakovszky, M.L, Cui, D, Green, R, Karimi-Busheri, F, Mani, R.S, Galicia, S, Koch, C.A, Cass, C.E, Durocher, D, Weinfeld, M, Glover, J.N.M. 登録日 2005-01-13 公開日 2005-03-15 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase. Mol.Cell, 17, 2005
3K0B	Crystal structure of a predicted N6-adenine-specific DNA methylase from Listeria monocytogenes str. 4b F2365 分子名称: 1,2-ETHANEDIOL, GLYCEROL, predicted N6-adenine-specific DNA methylase 著者 Nocek, B, Xu, X, Cui, H, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-09-24 公開日 2009-10-13 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of a predicted N6-adenine-specific DNA methylase from Listeria monocytogenes str. 4b F2365 To be Published
3HM5	SANT domain of human DNA methyltransferase 1 associated protein 1 分子名称: CALCIUM ION, DNA methyltransferase 1-associated protein 1, UNKNOWN ATOM OR ION 著者 Dombrovski, L, Tempel, W, Amaya, M.F, Tong, Y, Ni, S, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Park, H, Wu, H, Structural Genomics Consortium (SGC) 登録日 2009-05-28 公開日 2009-06-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 SANT domain of human DNA methyltransferase 1 associated protein 1 To be Published
3P43	Structure and Activities of Archaeal Members of the LigD 3' Phosphoesterase DNA Repair Enzyme Superfamily 分子名称: CHLORIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ... 著者 Smith, P, Nair, P.A, Das, U, Shuman, S. 登録日 2010-10-05 公開日 2011-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily. Nucleic Acids Res., 39, 2011
5U5R	Crystal Structure and X-ray Diffraction Data Collection of Importin-alpha from Mus musculus Complexed with a PMS2 NLS Peptide 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Importin subunit alpha-1, Mismatch repair endonuclease PMS2 著者 Barros, A.C, Takeda, A.A, Dreyer, T.R, Velazquez-Campoy, A, Kobe, B, Fontes, M.R. 登録日 2016-12-07 公開日 2018-03-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 DNA mismatch repair proteins MLH1 and PMS2 can be imported to the nucleus by a classical nuclear import pathway. Biochimie, 146, 2018
3HTN	Crystal structure of a putative dna binding protein (bt_1116) from bacteroides thetaiotaomicron vpi-5482 at 1.50 A resolution 分子名称: FE (III) ION, NICKEL (II) ION, PENTAETHYLENE GLYCOL, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2009-06-12 公開日 2009-06-30 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of Putative DNA binding protein (NP_810029.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.50 A resolution To be Published
4B87	Crystal structure of human DNA cross-link repair 1A 分子名称: 1,2-ETHANEDIOL, DNA CROSS-LINK REPAIR 1A PROTEIN, ZINC ION 著者 Allerston, C.K, Berridge, G, Carpenter, E.P, Kochan, G, Krojer, T, Mahajan, P, Vollmar, M, Yue, W.W, Arrowsmith, C.H, Edwards, A, Bountra, C, von Delft, F, Gileadi, O. 登録日 2012-08-24 公開日 2012-11-28 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Crystal Structure of Human DNA Cross-Link Repair 1A To be Published

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