PDB: 7742 件ウェブページステータス検索Chemie searchBIRD

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5TMA	Zymomonas mobilis pyruvate decarboxylase mutant PDC-2.3 分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Pyruvate decarboxylase, ... 著者 Alahuhta, P.M, Lunin, V.V. 登録日 2016-10-12 公開日 2017-10-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 An iterative computational design approach to increase the thermal endurance of a mesophilic enzyme. Biotechnol Biofuels, 11, 2018
1K88	Crystal structure of procaspase-7 分子名称: procaspase-7 著者 Chai, J, Wu, Q, Shiozaki, E, Srinivasa, S.M, Alnemri, E.S, Shi, Y. 登録日 2001-10-23 公開日 2001-11-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of a procaspase-7 zymogen: mechanisms of activation and substrate binding Cell(Cambridge,Mass.), 107, 2001
5TVY	Computationally Designed Fentanyl Binder - Fen49 分子名称: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, Endo-1,4-beta-xylanase A 著者 Bick, M.J, Greisen, P.J, Morey, K.J, Antunes, M.S, La, D, Sankaran, B, Reymond, L, Johnsson, K, Medford, J.I, Baker, D. 登録日 2016-11-10 公開日 2017-10-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Computational design of environmental sensors for the potent opioid fentanyl. Elife, 6, 2017
6Y0W	Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution 分子名称: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin, ... 著者 Baeriswyl, S, Stocker, A, Reymond, J.-L. 登録日 2020-02-10 公開日 2021-02-17 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution To Be Published
6Y0X	Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution 分子名称: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, D-LYSINE, Fucose-binding lectin protein, ... 著者 Baeriswyl, S, Stocker, A, Reymond, J.-L. 登録日 2020-02-10 公開日 2021-02-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.425 Å) 主引用文献 Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution To Be Published
6FG4	Crystal Structure of the Amyloid-like IIKVIK Segment from the S. aureus Biofilm-associated PSMalpha1 分子名称: Phenol-soluble modulin alpha 1 peptide, SULFATE ION 著者 Landau, M, Colletier, J.-P. 登録日 2018-01-09 公開日 2018-08-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides. Nat Commun, 9, 2018
6FGR	Crystal Structure of the Amyloid-like IIKIIK Segment from the S. aureus Biofilm-associated PSMalpha4 分子名称: 1,2-ETHANEDIOL, Psm alpha-4, SULFATE ION 著者 Landau, M, Colletier, J.-P. 登録日 2018-01-11 公開日 2018-08-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Extreme amyloid polymorphism in Staphylococcus aureus virulent PSM alpha peptides. Nat Commun, 9, 2018
3SDK	Structure of yeast 20S open-gate proteasome with Compound 34 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, N-[(2S)-3-(3-tert-butyl-1,2,4-oxadiazol-5-yl)-1-({(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}amino)-1-oxopropan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide, ... 著者 Sintchak, M.D. 登録日 2011-06-09 公開日 2012-06-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Optimization of a series of dipeptides with a P3 threonine residue as non-covalent inhibitors of the chymotrypsin-like activity of the human 20S proteasome. Bioorg.Med.Chem.Lett., 20, 2010
5UK2	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... 著者 Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. 登録日 2017-01-19 公開日 2017-05-31 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
5UJZ	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... 著者 Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. 登録日 2017-01-19 公開日 2017-05-31 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
4WQP	Crystal structure of RORc in complex with a benzyl sulfonamide inverse agonist 分子名称: N-[4-(4-acetylpiperazin-1-yl)benzyl]-N-(2-methylpropyl)-1-phenylmethanesulfonamide, Nuclear receptor ROR-gamma, SULFATE ION, ... 著者 Boenig, G, Hymowitz, S.G. 登録日 2014-10-22 公開日 2015-01-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Minor Structural Change to Tertiary Sulfonamide RORc Ligands Led to Opposite Mechanisms of Action. Acs Med.Chem.Lett., 6, 2015
8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA 分子名称: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPJ	Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPG	Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6FNV	Solution structure of mule deer prion protein with polymorphism S138 分子名称: Major prion protein 著者 Slapsak, U, Ilc, G, Plavec, J. 登録日 2018-02-05 公開日 2019-08-28 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution structure of mule deer prion protein with polymorphism S138 To Be Published
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA 分子名称: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (2.41 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6G4Z	Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 2f 分子名称: 5-fluoranyl-1-[4-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrol-3-yl]ethynyl]pyridin-2-yl]indazole-3-carboxamide, Mitogen-activated protein kinase kinase kinase 14 著者 Leonardo-Silvestre, H, McEwan, P.A, Hymowitz, S.G. 登録日 2018-03-28 公開日 2018-07-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase. J. Med. Chem., 61, 2018
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture 分子名称: Genome polyprotein (Fragment) 著者 Kavcic, L, Kezar, A, Podobnik, M. 登録日 2023-04-07 公開日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6G4Y	Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 1a 分子名称: 10-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrolidin-3-yl]ethynyl]-~{N}3-(oxan-4-yl)-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepine-2,3-dicarboxamide, Mitogen-activated protein kinase kinase kinase 14, SULFATE ION 著者 Hole, A.J, Hymowitz, S.G, McEwan, P.A. 登録日 2018-03-28 公開日 2018-07-04 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase. J. Med. Chem., 61, 2018
5UK0	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... 著者 Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. 登録日 2017-01-19 公開日 2017-05-31 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
6XPI	CutR flat hexamer, form 1 分子名称: Ethanolamine utilization protein EutS 著者 Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O. 登録日 2020-07-08 公開日 2020-07-22 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci., 29, 2020
6XPJ	CutR flat hexamer, form 2 分子名称: Ethanolamine utilization protein EutS, SULFATE ION 著者 Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O. 登録日 2020-07-08 公開日 2020-07-22 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci., 29, 2020
5UK1	CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... 著者 Liu, Y, Pan, J, Caradonna, T, Jenni, S, Raymond, D.D, Schmidt, A.G, Harrison, S.C, Grigorieff, N. 登録日 2017-01-19 公開日 2017-05-31 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol., 429, 2017
8BXU	Crystal structure of Odorant Binding Protein 5 from Anopheles gambiae (AgamOBP5) with MPD (2-Methyl-2,4-pentanediol) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-ETHOXYETHANOL, Odorant binding protein, ... 著者 Liggri, P.G.V, Tsitsanou, K.E, Zographos, S.E. 登録日 2022-12-09 公開日 2023-03-22 最終更新日 2023-04-12 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 The structure of AgamOBP5 in complex with the natural insect repellents Carvacrol and Thymol: Crystallographic, fluorescence and thermodynamic binding studies. Int.J.Biol.Macromol., 237, 2023

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