PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8T6O	SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-16 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T6T	SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-18 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T6S	SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-18 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T6X	SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-19 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
6IY3	Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (147-MER), Histone H2A, ... 著者 Li, M, Xia, X, Liu, X, Li, X, Chen, Z. 登録日 2018-12-12 公開日 2019-04-03 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 Mechanism of DNA translocation underlying chromatin remodelling by Snf2. Nature, 567, 2019
1ZG1	NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site 分子名称: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/nitrite response regulator protein narL, ... 著者 Maris, A.E, Kaczor-Grzeskowiak, M, Ma, Z, Kopka, M.L, Gunsalus, R.P, Dickerson, R.E. 登録日 2005-04-20 公開日 2005-11-22 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Primary and Secondary Modes of DNA Recognition by the NarL Two-Component Response Regulator. Biochemistry, 44, 2005
1J9I	STRUCTURE OF THE DNA BINDING DOMAIN OF THE GPNU1 SUBUNIT OF LAMBDA TERMINASE 分子名称: TERMINASE SMALL SUBUNIT 著者 De Beer, T, Meyer, J, Ortega, M, Yang, Q, Maes, L, Duffy, C, Berton, N, Sippy, J, Overduin, M, Feiss, M, Catalano, C. 登録日 2001-05-25 公開日 2002-08-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Insights into specific DNA recognition during the assembly of a viral genome packaging machine. Mol.Cell, 9, 2002
1PJR	STRUCTURE OF DNA HELICASE 分子名称: PCRA 著者 Subramanya, H.S, Bird, L.E, Brannigan, J.A, Wigley, D.B. 登録日 1996-10-11 公開日 1997-12-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a DExx box DNA helicase. Nature, 384, 1996
2V6E	protelomerase TelK complexed with substrate DNA 分子名称: PROTELEMORASE, TELRL, VANADATE ION 著者 Aihara, H, Huang, W.M, Ellenberger, T. 登録日 2007-07-17 公開日 2007-10-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 An Interlocked Dimer of the Protelomerase Telk Distorts DNA Structure for the Formation of Hairpin Telomeres Mol.Cell, 27, 2007
6KFJ	NMR solution structure of the 1:1 complex of wtTel26 G-quadruplex and a tripodal cationic fluorescent probe NBTE 分子名称: 4,4',4''-(nitrilotris(benzene-4,1-diyl))tris(1-ethylpyridin-1-ium) iodide, G-quadruplex DNA wtTel26 著者 Liu, W, Liu, L.Y, Mao, Z.W. 登録日 2019-07-07 公開日 2020-07-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Quantitative Detection of G-Quadruplex DNA in Live Cells Based on Photon Counts and Complex Structure Discrimination. Angew.Chem.Int.Ed.Engl., 59, 2020
3U2N	Crystal structure of DNA(CGCGAATTCGCG)2 at 1.25 angstroms 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wei, D.G, Neidle, S. 登録日 2011-10-04 公開日 2013-04-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster. J.Am.Chem.Soc., 135, 2013
1NJF	Nucleotide bound form of an isolated E. coli clamp loader gamma subunit 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. 登録日 2002-12-30 公開日 2003-04-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit Structure, 11, 2003
8T6Y	SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-19 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T78	SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-19 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T77	SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-19 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
8T79	SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop 分子名称: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ... 著者 Hibshman, G.N, Bravo, J.P.K, Taylor, D.W. 登録日 2023-06-20 公開日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun, 15, 2024
1XSD	Crystal structure of the BlaI repressor in complex with DNA 分子名称: 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3', penicillinase repressor 著者 Safo, M.K, Ko, T.-P, Musayev, F.N, Zhao, Q, Robinson, H, Scarsdale, N, Wang, A.H.-J, Archer, G.L. 登録日 2004-10-19 公開日 2005-03-29 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
8IF5	AFB1-AF26 APTAMER COMPLEX 分子名称: AFB1 DNA aptamer (26-MER), AFLATOXIN B1 著者 Xu, G.H, Wang, C, Li, C.G. 登録日 2023-02-17 公開日 2023-07-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural basis for high-affinity recognition of aflatoxin B1 by a DNA aptamer. Nucleic Acids Res., 51, 2023
1XPX	Structural basis of prospero-DNA interaction; implications for transcription regulation in developing cells 分子名称: 5'-D(*AP*GP*CP*AP*TP*GP*CP*CP*TP*G)-3', 5'-D(*CP*AP*GP*GP*CP*AP*TP*GP*CP*T)-3', Protein prospero 著者 Yousef, M.S, Matthews, B.W. 登録日 2004-10-09 公開日 2005-05-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis of Prospero-DNA Interaction: Implications for Transcription Regulationin Developing Cells. STRUCTURE, 13, 2005
8OET	SFX structure of the class II photolyase complexed with a thymine dimer 分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, DNA (14-mer), Deoxyribodipyrimidine photo-lyase, ... 著者 Lane, T.J, Christou, N.-E, Melo, D.V.M, Apostolopoulou, V, Pateras, A, Mashhour, A.R, Galchenkova, M, Gunther, S, Reinke, P, Kremling, V, Oberthuer, D, Henkel, A, Sprenger, J, Scheer, T.E.S, Lange, E, Yefanov, O.N, Middendorf, P, Sellberg, J.A, Schubert, R, Fadini, A, Cirelli, C, Beale, E.V, Johnson, P, Dworkowski, F, Ozerov, D, Bertrand, Q, Wranik, M, Zitter, E.D, Turk, D, Bajt, S, Chapman, H, Bacellar, C. 登録日 2023-03-12 公開日 2023-11-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 Time-resolved crystallography captures light-driven DNA repair. Science, 382, 2023
1ZEY	CGG A-DNA 分子名称: 5'-D(*CP*CP*CP*CP*GP*CP*GP*GP*GP*G)-3', SODIUM ION 著者 Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. 登録日 2005-04-19 公開日 2005-05-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZF6	TGG DUPLEX A-DNA 分子名称: 5'-D(*CP*CP*CP*CP*AP*TP*GP*GP*GP*G)-3', CALCIUM ION, SODIUM ION 著者 Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. 登録日 2005-04-19 公開日 2005-05-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
3T0P	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2011-07-20 公開日 2011-08-10 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution To be published
7XG3	CryoEM structure of type IV-A CasDinG bound NTS-nicked Csf-crRNA-dsDNA quaternary complex 分子名称: Csf1, Csf2, Csf3, ... 著者 Zhang, J.T, Cui, N, Huang, H.D, Jia, N. 登録日 2022-04-02 公開日 2023-08-09 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment. Mol.Cell, 83, 2023
7XG0	CryoEM structure of type IV-A Csf-crRNA-dsDNA ternary complex 分子名称: Csf1, Csf2, Csf3, ... 著者 Zhang, J.T, Cui, N, Huang, H.D, Jia, N. 登録日 2022-04-02 公開日 2023-08-09 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment. Mol.Cell, 83, 2023

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