PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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2RUV	Solution structures of the DNA-binding domain (ZF4) of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
2RV5	Solution structures of the DNA-binding domain (ZF8) of mouse immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
2RUU	Solution structures of the DNA-binding domain (ZF3) of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
2RUZ	Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
1Q3C	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The E2A mutant at 2.3 resolution. 分子名称: Endonuclease VIII, GLYCEROL, MAGNESIUM ION, ... 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
1DSI	Solution structure of a duocarmycin sa-indole-alkylated dna dupleX 分子名称: 4-HYDROXY-6-(1H-INDOLE-2-CARBONYL)-8-METHYL-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, DNA (5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3') 著者 Schnell, J.R, Ketchem, R.R, Boger, D.L, Chazin, W.J. 登録日 1998-07-29 公開日 1998-08-05 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Binding-Induced Activation of DNA Alkylation by Duocarmycin SA: Insights from the Structure of an Indole Derivative-DNA Adduct J.Am.Chem.Soc., 121, 1999
7ZPP	Cryo-EM structure of the MVV CSC intasome at 4.5A resolution 分子名称: Integrase, vDNA, non-transferred strand, ... 著者 Ballandras-Colas, A, Maskell, D, Pye, V.E, Locke, J, Swuec, S, Kotecha, A, Costa, A, Cherepanov, P. 登録日 2022-04-28 公開日 2022-05-11 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 A supramolecular assembly mediates lentiviral DNA integration Science, 355, 2017
1LAE	Solution Structure of the DNA 13-mer Hairpin CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct at the Seventh Position 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
2WPU	Chaperoned ruthenium metallodrugs that recognize telomeric DNA 分子名称: (3AS,4S,6AR)-4-(5-((3R,4R)-3,4-DIAMINOPYRROLIDIN-1-YL)-5-OXOPENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE-P-CYMENE-CHLORO-RUTHENIUM(III), GLYCEROL, STREPTAVIDIN, ... 著者 Heinisch, T, Schirmer, T, Zimbron, J.M, Sardo, A, Wohlschlager, T, Gradinaru, J, Creus, M, Ward, T.R. 登録日 2009-08-10 公開日 2010-10-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Chemo-Genetic Optimization of DNA Recognition by Metallodrugs Using a Presenter-Protein Strategy. Chemistry, 16, 2010
1R0A	Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms 分子名称: 5'-D(*A*TP*GP*CP*AP*TP*CP*GP*GP*CP*GP*CP*TP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*GP*GP*T)-3', 5'-D(*C*CP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*AP*GP*CP*GP*CP*CP*GP*(2DA))-3', GLYCEROL, ... 著者 Tuske, S, Ding, J, Arnold, E. 登録日 2003-09-19 公開日 2004-08-03 最終更新日 2021-10-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nonnucleoside inhibitor binding affects the interactions of the fingers subdomain of human immunodeficiency virus type 1 reverse transcriptase with DNA. J.Virol., 78, 2004
3G0Q	Crystal Structure of MutY bound to its inhibitor DNA 分子名称: 5'-D(*AP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*AP*GP*TP*CP*TP*T)-3', A/G-specific adenine glycosylase, ... 著者 Lee, S, Verdine, G.L. 登録日 2009-01-28 公開日 2009-11-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Atomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylase. Proc.Natl.Acad.Sci.Usa, 106, 2009
1Q39	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The WT enzyme at 2.8 resolution. 分子名称: CALCIUM ION, Endonuclease VIII, ZINC ION 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
5G0W	InhA in complex with a DNA encoded library hit 分子名称: (2S,4S)-N-methyl-4-[[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-2-[[4-(pyrazol-1-ylmethyl)phenyl]carbonylamino]butanoyl]amino]-1-(phenylcarbonyl)pyrrolidine-2-carboxamide, ENOYL-ACYL CARRIER PROTEIN REDUCTASE, MAGNESIUM ION, ... 著者 Read, J.A, Breed, J. 登録日 2016-03-22 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology Proc.Natl.Acad.Sci.USA, 113, 2016
2W9M	Structure of family X DNA polymerase from Deinococcus radiodurans 分子名称: MERCURY (II) ION, POLYMERASE X, ZINC ION 著者 Leulliot, N, Cladiere, L, Lecointe, F, Durand, D, Hubscher, U, van Tilbeurgh, H. 登録日 2009-01-27 公開日 2009-02-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 The Family X DNA Polymerase from Deinococcus Radioduran Adopts a Non-Standard Extended Conformation. J.Biol.Chem., 284, 2009
1LA8	Solution structure of the DNA hairpin 13-mer CGCGGTGTCCGCG 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*GP*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
5G0S	InhA in complex with a DNA encoded library hit 分子名称: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH], N-[4-[2-[(2S)-4-[2-(methylamino)-2-oxidanylidene-ethyl]-3-oxidanylidene-2-(phenylmethyl)piperazin-1-yl]-2-oxidanylidene-ethyl]cyclohexyl]-2-(3-methyl-1-benzothiophen-2-yl)ethanamide, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Read, J.A, Breed, J. 登録日 2016-03-22 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology Proc.Natl.Acad.Sci.USA, 113, 2016
3N4O	Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*(B7C)P*CP*GP*CP*G)-3' 著者 Takenaka, A, Juan, E.C.M, Shimizu, S. 登録日 2010-05-22 公開日 2010-08-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res., 2010
4EFE	crystal structure of DNA ligase 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, SULFATE ION, ... 著者 Wei, Y, Wang, T, Charifson, P, Xu, W. 登録日 2012-03-29 公開日 2013-04-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 crystal structure of DNA ligase To be Published
5G0V	InhA in complex with a DNA encoded library hit 分子名称: ENOYL-ACYL CARRIER PROTEIN REDUCTASE, MAGNESIUM ION, N-[2-(methylamino)-2-oxidanylidene-ethyl]-2-(4-pyrazol-1-ylphenyl)-N-(1-pyridin-2-ylpiperidin-4-yl)ethanamide, ... 著者 Read, J.A, Breed, J. 登録日 2016-03-22 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology Proc.Natl.Acad.Sci.USA, 113, 2016
5G0T	InhA in complex with a DNA encoded library hit 分子名称: 1-benzyl-N-[cis-4-(2-{[(4-fluorophenyl)methyl][2-(methylamino)-2-oxoethyl]amino}-2-oxoethyl)cyclohexyl]-5-methyl-1H-1,2,3-triazole-4-carboxamide, ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Read, J.A, Breed, J. 登録日 2016-03-22 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology Proc.Natl.Acad.Sci.USA, 113, 2016
2LY4	HMGB1-facilitated p53 DNA binding occurs via HMG-box/p53 transactivation domain interaction and is regulated by the acidic tail 分子名称: Cellular tumor antigen p53, High mobility group protein B1 著者 Rowell, J.P, Simpson, K.L, Stott, K, Watson, M, Thomas, J.O. 登録日 2012-09-12 公開日 2012-10-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 HMGB1-Facilitated p53 DNA Binding Occurs via HMG-Box/p53 Transactivation Domain Interaction, Regulated by the Acidic Tail. Structure, 20, 2012
3IGT	A rare nucleotide base tautomer in the structure of an asymmetric DNA junction 分子名称: 5'-D(*CP*CP*GP*AP*GP*TP*CP*CP*TP*A)-3', 5'-D(*CP*TP*CP*AP*AP*CP*TP*CP*GP*G)-3', 5'-D(*TP*AP*GP*GP*GP*GP*CP*CP*GP*A)-3', ... 著者 Khuu, P, Ho, P.S. 登録日 2009-07-28 公開日 2009-08-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A rare nucleotide base tautomer in the structure of an asymmetric DNA junction. Biochemistry, 48, 2009
3N4N	Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one 分子名称: 5'-D(*CP*GP*CP*GP*AP*A)-3', 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3' 著者 Takenaka, A, Juan, E.C.M, Shimizu, S. 登録日 2010-05-22 公開日 2010-08-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res., 2010
4EEQ	Crystal structure of E. faecalis DNA ligase with inhibitor 分子名称: 4-amino-2-(cyclopentyloxy)pyrimidine-5-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Wang, T, Charifson, P, Wei, Y. 登録日 2012-03-28 公開日 2013-04-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Design, Synthesis and Activity Evaluation of Potent NAD+ DNA Ligase Inhibitors as Potential Antibacterial Agents. To be Published
4HQI	Structure of O6-Benzyl-2'-deoxyguanosine opposite perimidinone-derived synthetic nucleoside in DNA duplex 分子名称: SPERMINE, STRONTIUM ION, Short modified nucleic acids 著者 Kowal, E.A, Lad, R, Pallan, P.S, Muffly, E, Wawrzak, Z, Egli, M, Sturla, S.J, Stone, M.P. 登録日 2012-10-25 公開日 2013-07-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction. Nucleic Acids Res., 41, 2013

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