Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7AIF
DownloadVisualize
BU of 7aif by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-GLUTAMATE TENOFOVIR WITH BOUND MANGANESE
分子名称: DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), Gag-Pol polyprotein, ...
著者Gu, W, Martinez, S.E, Nguyen, H, Xu, H, Herdewijn, P, de Jonghe, S, Das, K.
登録日2020-09-27
公開日2021-01-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Tenofovir-Amino Acid Conjugates Act as Polymerase Substrates-Implications for Avoiding Cellular Phosphorylation in the Discovery of Nucleotide Analogues.
J.Med.Chem., 64, 2021
7AID
DownloadVisualize
BU of 7aid by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND D-ASPARTATE TENOFOVIR
分子名称: D-Aspartate Tenofovir, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
著者Gu, W, Martinez, S.E, Nguyen, H, Xu, H, Herdewijn, P, de Jonghe, S, Das, K.
登録日2020-09-26
公開日2021-01-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Tenofovir-Amino Acid Conjugates Act as Polymerase Substrates-Implications for Avoiding Cellular Phosphorylation in the Discovery of Nucleotide Analogues.
J.Med.Chem., 64, 2021
7AHX
DownloadVisualize
BU of 7ahx by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND D-ASPARTATE TENOFOVIR WITH BOUND MANGANESE
分子名称: D-Aspartate Tenofovir, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
著者Gu, W, Martinez, S.E, Nguyen, H, Xu, H, Herdewijn, P, de Jonghe, S, Das, K.
登録日2020-09-25
公開日2021-01-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Tenofovir-Amino Acid Conjugates Act as Polymerase Substrates-Implications for Avoiding Cellular Phosphorylation in the Discovery of Nucleotide Analogues.
J.Med.Chem., 64, 2021
7AHQ
DownloadVisualize
BU of 7ahq by Molmil
Cryo-EM structure of F-actin stabilized by trans-optoJASP-8
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Pospich, S, Raunser, S.
登録日2020-09-25
公開日2021-01-27
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM Resolves Molecular Recognition Of An Optojasp Photoswitch Bound To Actin Filaments In Both Switch States.
Angew.Chem.Int.Ed.Engl., 60, 2021
7AHP
DownloadVisualize
BU of 7ahp by Molmil
Crystal structure of Ixodes ricinus serpin - Iripin-3
分子名称: Putative salivary serpin, TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
著者Kascakova, B, Kuta Smatanova, I, Prudnikova, T.
登録日2020-09-25
公開日2021-03-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Iripin-3, a New Salivary Protein Isolated From Ixodes ricinus Ticks, Displays Immunomodulatory and Anti-Hemostatic Properties In Vitro
Front Immunol, 12, 2021
7AHU
DownloadVisualize
BU of 7ahu by Molmil
Anti-FX Fab of mim8 in complex with human FXa
分子名称: Anti-FX Fab of mim8 heavy chain, Anti-FX Fab of mim8 light chain, CALCIUM ION, ...
著者Johansson, E.
登録日2020-09-25
公開日2021-07-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A factor VIIIa-mimetic bispecific antibody, Mim8, ameliorates bleeding upon severe vascular challenge in hemophilia A mice.
Blood, 138, 2021
7AHV
DownloadVisualize
BU of 7ahv by Molmil
Anti-FIXa Fab of mim8 in complex with human FIXa
分子名称: CALCIUM ION, Coagulation factor IX, L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide, ...
著者Johansson, E.
登録日2020-09-25
公開日2021-07-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献A factor VIIIa-mimetic bispecific antibody, Mim8, ameliorates bleeding upon severe vascular challenge in hemophilia A mice.
Blood, 138, 2021
7D5A
DownloadVisualize
BU of 7d5a by Molmil
Crystal Structure of BACE1 in complex with N-{3-[(9S)-7-amino-2,2-difluoro-9-(prop-1-yn-1-yl)-6-oxa-8-azaspiro[3.5]non-7-en-9-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide
分子名称: Beta-secretase 1, GLYCEROL, IODIDE ION, ...
著者Fujimoto, K, Yoshida, S, Tadano, G, Asada, N, Fuchino, K, Suzuki, S, Matsuoka, E, Yamamoto, T, Yamamoto, S, Ando, S, Kanegawa, N, Tonomura, Y, Ito, H, Moechars, D, Rombouts, F.J.R, Gijsen, H.J.M, Kusakabe, K.I.
登録日2020-09-25
公開日2021-03-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-Based Approaches to Improving Selectivity through Utilizing Explicit Water Molecules: Discovery of Selective beta-Secretase (BACE1) Inhibitors over BACE2.
J.Med.Chem., 64, 2021
7D5B
DownloadVisualize
BU of 7d5b by Molmil
BACE2 xaperone complex with N-{3-[(5R)-3-amino-2,5-dimethyl-1,1-dioxo-5,6-dihydro-2H-1lambda6,2,4-thiadiazin-5-yl]-4-fluorophenyl}-5-fluoropyridine-2-carboxamide
分子名称: 1,2-ETHANEDIOL, Beta-secretase 2, CHLORIDE ION, ...
著者Fujimoto, K, Yoshida, S, Tadano, G, Asada, N, Fuchino, K, Suzuki, S, Matsuoka, E, Yamamoto, T, Yamamoto, S, Ando, S, Kanegawa, N, Tonomura, Y, Ito, H, Moechars, D, Rombouts, F.J.R, Gijsen, H.J.M, Kusakabe, K.I.
登録日2020-09-25
公開日2021-03-31
最終更新日2021-04-07
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Structure-Based Approaches to Improving Selectivity through Utilizing Explicit Water Molecules: Discovery of Selective beta-Secretase (BACE1) Inhibitors over BACE2.
J.Med.Chem., 64, 2021
7AHD
DownloadVisualize
BU of 7ahd by Molmil
OpuA (E190Q) occluded
分子名称: ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
登録日2020-09-24
公開日2020-11-25
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHN
DownloadVisualize
BU of 7ahn by Molmil
Cryo-EM structure of F-actin stabilized by cis-optoJASP-8
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Pospich, S, Raunser, S.
登録日2020-09-24
公開日2021-01-27
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM Resolves Molecular Recognition Of An Optojasp Photoswitch Bound To Actin Filaments In Both Switch States.
Angew.Chem.Int.Ed.Engl., 60, 2021
7AHH
DownloadVisualize
BU of 7ahh by Molmil
OpuA inhibited inward-facing, SBD docked
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component, ...
著者Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
登録日2020-09-24
公開日2020-11-25
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHE
DownloadVisualize
BU of 7ahe by Molmil
OpuA inhibited inward facing
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component
著者Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
登録日2020-09-24
公開日2020-11-25
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHC
DownloadVisualize
BU of 7ahc by Molmil
OpuA apo inward-facing
分子名称: ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component
著者Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
登録日2020-09-24
公開日2020-11-25
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7K7U
DownloadVisualize
BU of 7k7u by Molmil
BetaB2-crystallin
分子名称: Beta-crystallin B2
著者Tan, L.L, Jackson, C.J.
登録日2020-09-24
公開日2022-02-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献BetaB2-crystallin
To Be Published
7K7Z
DownloadVisualize
BU of 7k7z by Molmil
Structure of a hit for G Protein Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure
分子名称: 3-benzyl-7-(1H-pyrazol-4-yl)quinazolin-4(3H)-one, Beta-adrenergic receptor kinase 1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Spurlino, J.C, Milligan, C.
登録日2020-09-24
公開日2020-10-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.606087 Å)
主引用文献Hit-to-lead optimization and discovery of a potent, and orally bioavailable G protein coupled receptor kinase 2 (GRK2) inhibitor.
Bioorg.Med.Chem.Lett., 30, 2020
7D4P
DownloadVisualize
BU of 7d4p by Molmil
Structure of human TRPC5 in complex with clemizole
分子名称: (2S)-2-(hexadecanoyloxy)-3-hydroxypropyl (9Z)-octadec-9-enoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1-[(4-chlorophenyl)methyl]-2-(pyrrolidin-1-ylmethyl)benzimidazole, ...
著者Chen, L, Song, K, Wei, M, Guo, W.
登録日2020-09-24
公開日2021-03-31
最終更新日2021-10-13
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural basis for human TRPC5 channel inhibition by two distinct inhibitors.
Elife, 10, 2021
7D4Q
DownloadVisualize
BU of 7d4q by Molmil
Structure of human TRPC5 in complex with HC-070
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 8-(3-chloranylphenoxy)-7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)purine-2,6-dione, CALCIUM ION, ...
著者Chen, L, Song, K, Wei, M, Guo, W.
登録日2020-09-24
公開日2021-03-31
最終更新日2021-10-13
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献Structural basis for human TRPC5 channel inhibition by two distinct inhibitors.
Elife, 10, 2021
7K81
DownloadVisualize
BU of 7k81 by Molmil
KIR3DL1*005 in complex with HLA-A*24:02 presenting the RYPLTFGW peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ARG-TYR-PRO-LEU-THR-PHE-GLY-TRP, Beta-2-microglobulin, ...
著者MacLachlan, B.J, Rossjohn, J, Vivian, J.P.
登録日2020-09-24
公開日2020-12-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Role of the HLA Class I alpha 2 Helix in Determining Ligand Hierarchy for the Killer Cell Ig-like Receptor 3DL1.
J Immunol., 206, 2021
7K80
DownloadVisualize
BU of 7k80 by Molmil
KIR3DL1*001 in complex with HLA-A*24:02 presenting the RYPLTFGW peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ARG-TYR-PRO-LEU-THR-PHE-GLY-TRP, ...
著者MacLachlan, B.J, Rossjohn, J, Vivian, J.P.
登録日2020-09-24
公開日2020-12-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Role of the HLA Class I alpha 2 Helix in Determining Ligand Hierarchy for the Killer Cell Ig-like Receptor 3DL1.
J Immunol., 206, 2021
7D4I
DownloadVisualize
BU of 7d4i by Molmil
Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
分子名称: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ...
著者Du, Y, Zhang, J, An, W, Ye, K.
登録日2020-09-24
公開日2021-10-06
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Cryo-EM structure of 90S small ribosomal precursors complex with Dhr1
To Be Published
5ROJ
DownloadVisualize
BU of 5roj by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo59
分子名称: Proteinase K, SULFATE ION
著者Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
登録日2020-09-23
公開日2021-05-26
最終更新日2021-06-23
実験手法X-RAY DIFFRACTION (1.02 Å)
主引用文献FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5ROE
DownloadVisualize
BU of 5roe by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo6
分子名称: Proteinase K, SULFATE ION
著者Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
登録日2020-09-23
公開日2021-05-26
最終更新日2021-06-23
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5ROF
DownloadVisualize
BU of 5rof by Molmil
PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen C11a
分子名称: 2-(1H-indol-3-yl)-N-[(1-methyl-1H-pyrrol-2-yl)methyl]ethanamine, Proteinase K, SULFATE ION
著者Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
登録日2020-09-23
公開日2021-05-26
最終更新日2021-06-23
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5ROH
DownloadVisualize
BU of 5roh by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo61
分子名称: Proteinase K, SULFATE ION
著者Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
登録日2020-09-23
公開日2021-05-26
最終更新日2021-06-23
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon