PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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258D	FACTORS AFFECTING SEQUENCE SELECTIVITY ON NOGALAMYCIN INTERCALATION: THE CRYSTAL STRUCTURE OF D(TGTACA)-NOGALAMYCIN 分子名称: ACETATE ION, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3'), NOGALAMYCIN, ... 著者 Smith, C.K, Brannigan, J.A, Moore, M.H. 登録日 1996-05-12 公開日 1996-06-20 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Factors affecting DNA sequence selectivity of nogalamycin intercalation: the crystal structure of d(TGTACA)2-nogalamycin2. J.Mol.Biol., 263, 1996
6S1C	P3221 crystal form of the Ctf18-1-8/Pol2(1-528) complex 分子名称: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ... 著者 Grabarczyk, D.B. 登録日 2019-06-18 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (6.1 Å) 主引用文献 Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication. Nucleic Acids Res., 48, 2020
1Q3C	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The E2A mutant at 2.3 resolution. 分子名称: Endonuclease VIII, GLYCEROL, MAGNESIUM ION, ... 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
2Y7H	Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. 分子名称: 5'-D(*GP*TP*TP*CP*AP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*GP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*CP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*TP*GP*AP*AP*C)-3', S-ADENOSYLMETHIONINE, ... 著者 Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F. 登録日 2011-01-31 公開日 2011-02-09 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein. Nucleic Acids Res., 37, 2009
1WTB	Complex structure of the C-terminal RNA-binding domain of hnRNP D (AUF1) with telomere DNA 分子名称: 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0 著者 Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M. 登録日 2004-11-22 公開日 2005-04-05 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D J.Biol.Chem., 280, 2005
1ZR2	Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs 分子名称: AAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTG, ... 著者 Li, W, Kamtekar, S, Xiong, Y, Sarkis, G.J, Grindley, N.D, Steitz, T.A. 登録日 2005-05-18 公開日 2005-08-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Structure of a synaptic gamma delta resolvase tetramer covalently linked to two cleaved DNAs. Science, 309, 2005
1X0F	Complex structure of the C-terminal RNA-binding domain of hnRNP D(AUF1) with telomeric DNA 分子名称: 5'-D(P*TP*AP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein D0 著者 Enokizono, Y, Konishi, Y, Nagata, K, Ouhashi, K, Uesugi, S, Ishikawa, F, Katahira, M. 登録日 2005-03-22 公開日 2005-04-05 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D. J.Biol.Chem., 280, 2005
3S5A	ABH2 cross-linked to undamaged dsDNA-2 with cofactors 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*CP*TP*GP*TP*CP*TP*CP*AP*CP*TP*GP*TP*CP*G)-3', 5'-D(*TP*CP*GP*AP*CP*AP*GP*TP*GP*AP*GP*AP*CP*A)-3', ... 著者 Yi, C, Chen, B, Qi, B, Ramirez, B, Zhang, W, Jia, G, Zhang, L, Li, C.Q, Dinner, A.R, Yang, C.-G, He, C. 登録日 2011-05-21 公開日 2012-06-06 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Duplex interrogation by a direct DNA repair protein in search of base damage Nat.Struct.Mol.Biol., 19, 2012
3QN2	Structure-based design of a disulfide-linked oligomeric form of the Simian Virus 40 (SV40) large T antigen DNA binding domain 分子名称: CITRATE ANION, Large T antigen 著者 Meinke, G, Bullock, P.A. 登録日 2011-02-07 公開日 2011-06-01 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.661 Å) 主引用文献 Structure-based design of a disulfide-linked oligomeric form of the simian virus 40 (SV40) large T antigen DNA-binding domain. Acta Crystallogr.,Sect.D, 67, 2011
8FAY	Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G) 分子名称: Adenine DNA glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*CP*AP*(NR1)P*GP*TP*CP*T)-3'), ... 著者 Trasvina-Arenas, C.H, Lin, W.J, Demir, M, Fisher, A.J, David, S.S, Horvath, M.P. 登録日 2022-11-29 公開日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G) To Be Published
1M6R	Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang 分子名称: 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' 著者 Pan, B, Sundaralingam, M. 登録日 2002-07-17 公開日 2003-02-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang. Acta Crystallogr.,Sect.D, 59, 2003
1ZR4	Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently linked to two Cleaved DNAs 分子名称: AAA, TCAGTGTCCGATAATTTAT, TTATCGGACACTG, ... 著者 Li, W, Kamtekar, S, Xiong, Y, Sarkis, G.J, Grindley, N.D, Steitz, T.A. 登録日 2005-05-19 公開日 2005-08-30 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structure of a synaptic gamma delta resolvase tetramer covalently linked to two cleaved DNAs. Science, 309, 2005
1OYI	Solution structure of the Z-DNA binding domain of the vaccinia virus gene E3L 分子名称: double-stranded RNA-binding protein 著者 Kahmann, J.D, Wecking, D.A, Putter, V, Lowenhaupt, K, Kim, Y.-G, Schmieder, P, Oschkinat, H, Rich, A, Schade, M. 登録日 2003-04-04 公開日 2004-03-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the N-terminal domain of E3L shows a tyrosine conformation that may explain its reduced affinity to Z-DNA in vitro. Proc.Natl.Acad.Sci.USA, 101, 2004
8UK4	Crystal structure of human polymerase eta with incoming dTMPnPP nucleotide opposite urea lesion 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(UD8)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Tomar, R, Egli, M, Stone, M.P. 登録日 2023-10-12 公開日 2024-03-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Replication Bypass of the N -(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase eta. Biochemistry, 63, 2024
8UJV	Crystal structure of human polymerase eta with incoming dCMPnPP nucleotide opposite urea lesion 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(UD8)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Tomar, R, Egli, M, Stone, M.P. 登録日 2023-10-11 公開日 2024-03-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Replication Bypass of the N -(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase eta. Biochemistry, 63, 2024
8UJX	Crystal structure of human polymerase eta with incoming dGMPnPP nucleotide opposite urea lesion 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(UD8)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Tomar, R, Egli, M, Stone, M.P. 登録日 2023-10-11 公開日 2024-03-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Replication Bypass of the N -(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase eta. Biochemistry, 63, 2024
7V0C	Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pppG(2 ,5 )pG 分子名称: Cyclic GMP-AMP synthase, MANGANESE (II) ION, Palindromic DNA18, ... 著者 Wu, S, Gabelli, S.B, Sohn, J. 登録日 2022-05-10 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -pppG(2 ,5 )pG To Be Published
7V0R	Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -ppcpG(2 ,5 )pA 分子名称: Cyclic GMP-AMP synthase, MAGNESIUM ION, Palindromic DNA18, ... 著者 Wu, S, Gabelli, S.B, Sohn, J. 登録日 2022-05-10 公開日 2023-05-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Structure of Ternary Complex of cGAS with dsDNA and Bound 5 -ppcpG(2 ,5 )pA To Be Published
7N3Z	Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA-(apurinic or apyrimidinic site) endonuclease 2, ... 著者 Wojtaszek, J.L, Wallace, B.D, Williams, R.S. 登録日 2021-06-02 公開日 2022-09-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2. Cell Rep, 41, 2022
2VHG	Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA 分子名称: MANGANESE (II) ION, RIGHT END 31-MER, TRANSPOSASE ORFA 著者 Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F. 登録日 2007-11-21 公開日 2008-02-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.), 132, 2008
5EUG	CRYSTALLOGRAPHIC AND ENZYMATIC STUDIES OF AN ACTIVE SITE VARIANT H187Q OF ESCHERICHIA COLI URACIL DNA GLYCOSYLASE: CRYSTAL STRUCTURES OF MUTANT H187Q AND ITS URACIL COMPLEX 分子名称: PROTEIN (GLYCOSYLASE), URACIL 著者 Xiao, G, Tordova, M, Drohat, A.C, Jagadeesh, J, Stivers, J.T, Gilliland, G.L. 登録日 1998-12-27 公開日 1999-07-23 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited. Proteins, 35, 1999
4L5E	Crystal structure of A. aeolicus NtrC1 DNA binding domain 分子名称: SULFATE ION, Transcriptional regulator (NtrC family) 著者 Young, A, Maris, A.E, Vidangos, N.K, Hong, E, Pelton, J.G, Batchelor, J.D, Wemmer, D.E. 登録日 2013-06-10 公開日 2013-08-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators. Biopolymers, 99, 2013
3E41	Q138F HincII bound to GTCGAC and 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
5EW1	Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT3 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, HD1-deltaT3, ... 著者 Pica, A, Russo Krauss, I, Parente, V, Sica, F. 登録日 2015-11-20 公開日 2016-11-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers. Nucleic Acids Res., 45, 2017
2VJU	Crystal structure of the IS608 transposase in complex with the complete Right end 35-mer DNA and manganese 分子名称: MANGANESE (II) ION, RIGHT END 35-MER, TRANSPOSASE ORFA 著者 Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F. 登録日 2007-12-13 公開日 2008-02-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.), 132, 2008

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