PDB: 119 件ウェブページステータス検索Chemie searchBIRD

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1ZIP	BACILLUS STEAROTHERMOPHILUS ADENYLATE KINASE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MANGANESE (II) ION, ... 著者 Berry, M.B, Phillips Jr, G.N. 登録日 1997-05-07 公開日 1997-08-20 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
5X6L	Crystal structure of Notothenia coriiceps adenylate kinase variant 分子名称: BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, adenylate kinase 著者 Bae, E, Moon, S, Kim, J. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.862 Å) 主引用文献 TBD To Be Published
1Z83	Crystal structure of human AK1A in complex with AP5A 分子名称: Adenylate kinase 1, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, ... 著者 Filippakopoulos, P, Bunkoczi, G, Jansson, A, Schreurs, A, Knapp, S, Edwards, A, von Delft, F, Sundstrom, M, Structural Genomics Consortium (SGC) 登録日 2005-03-29 公開日 2005-04-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of human AK1A in complex with AP5A To be Published
1P3J	Adenylate Kinase from Bacillus subtilis 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Bae, E, Phillips Jr, G.N. 登録日 2003-04-17 公開日 2004-05-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J.Biol.Chem., 279, 2004
2CDN	Crystal structure of Mycobacterium tuberculosis adenylate kinase complexed with two molecules of ADP and Mg 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINASE, MAGNESIUM ION 著者 Bellinzoni, M, Haouz, A, Grana, M, Munier-Lehmann, H, Alzari, P.M. 登録日 2006-01-25 公開日 2006-05-10 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Crystal Structure of Mycobacterium Tuberculosis Adenylate Kinase in Complex with Two Molecules of Adp and Mg2+ Supports an Associative Mechanism for Phosphoryl Transfer. Protein Sci., 15, 2006
5XRU	Crystal structure of Notothenia coriiceps adenylate kinase variant 分子名称: BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, adenylate kinase 著者 Bae, E, Kim, J, Moon, S. 登録日 2017-06-09 公開日 2018-06-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes Sci Rep, 7, 2017
5UKD	PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYTIDINE-5'-MONOPHOSPHATE, ... 著者 Schlichting, I, Reinstein, J. 登録日 1999-04-18 公開日 1999-08-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 pH influences fluoride coordination number of the AlFx phosphoryl transfer transition state analog. Nat.Struct.Biol., 6, 1999
1UKZ	SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE 分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, URIDYLATE KINASE 著者 Mueller-Dieckmann, H.-J, Schulz, G.E. 登録日 1994-07-13 公開日 1995-01-26 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase. J.Mol.Biol., 246, 1995
5EJE	Crystal structure of E. coli Adenylate kinase G56C/T163C double mutant in complex with Ap5a 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, COBALT (II) ION 著者 Sauer, U.H, Kovermann, M, Grundstrom, C, Wolf-Watz, M, Sauer-Eriksson, A.E. 登録日 2015-11-01 公開日 2016-11-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for ligand binding to an enzyme by a conformational selection pathway. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2RGX	Crystal Structure of Adenylate Kinase from Aquifex Aeolicus in complex with Ap5A 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION 著者 Thai, V, Wolf-Watz, M, Fenn, T, Pozharski, E, Wilson, M.A, Petsko, G.A, Kern, D. 登録日 2007-10-05 公開日 2007-12-18 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Intrinsic motions along an enzymatic reaction trajectory. Nature, 450, 2007
3UKD	UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND ALF3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYTIDINE-5'-MONOPHOSPHATE, ... 著者 Schlichting, I, Reinstein, J. 登録日 1997-05-20 公開日 1998-05-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures of active conformations of UMP kinase from Dictyostelium discoideum suggest phosphoryl transfer is associative. Biochemistry, 36, 1997
1AK2	ADENYLATE KINASE ISOENZYME-2 分子名称: ADENYLATE KINASE ISOENZYME-2, SULFATE ION 著者 Schlauderer, G.J, Schulz, G.E. 登録日 1995-12-29 公開日 1996-06-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments. Protein Sci., 5, 1996
5YCF	Crystal structure of Xiphophorus maculatus adenylate kinase 分子名称: Adenylate kinase isoenzyme 1, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Bae, E, Kim, J, Moon, S. 登録日 2017-09-07 公開日 2018-09-12 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.938 Å) 主引用文献 Crystal structure of Xiphophorus maculatus adenylate kinase To Be Published
4W5H	New structural conformations of adenylate kinase from Streptococcus pneumoniae D39 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Adenylate kinase 著者 Thach, T.T, Lee, S.H. 登録日 2014-08-18 公開日 2014-11-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 New crystal structures of adenylate kinase from Streptococcus pneumoniae D39 in two conformations. Acta Crystallogr.,Sect.F, 70, 2014
1ZIO	PHOSPHOTRANSFERASE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Berry, M.B, Phillips Jr, G.N. 登録日 1996-06-07 公開日 1997-07-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
2AKY	HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION 著者 Abele, U, Schulz, G.E. 登録日 1995-07-28 公開日 1995-11-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci., 4, 1995
5X6K	Crystal structure of adenylate kinase 分子名称: BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, adenylate kinase isoenzyme 1 著者 Moon, S, Bae, E. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes Sci Rep, 7, 2017
3L0S	Crystal structures of Zinc, Cobalt and Iron containing Adenylate kinase from Gram-negative bacteria Desulfovibrio gigas 分子名称: Adenylate kinase, COBALT (II) ION, D(-)-TARTARIC ACID 著者 Mukhopadhyay, A, Trincao, J, Romao, M.J. 登録日 2009-12-10 公開日 2010-12-15 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of the zinc-, cobalt-, and iron-containing adenylate kinase from Desulfovibrio gigas: a novel metal-containing adenylate kinase from Gram-negative bacteria J.Biol.Inorg.Chem., 16, 2011
1ANK	THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP 分子名称: ADENOSINE MONOPHOSPHATE, ADENYLATE KINASE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Berry, M.B, Meador, B, Bilderback, T, Liang, P, Glaser, M, Phillips Jr, G.N. 登録日 1994-02-28 公開日 1994-05-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP. Proteins, 19, 1994
3HPQ	Crystal structure of wild-type adenylate kinase from E. coli, in complex with Ap5A 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Hilser, V.J, Travis, T.P, Bolen, D.W. 登録日 2009-06-04 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins. Proc.Natl.Acad.Sci.USA, 106, 2009
1AKE	STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP5A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Mueller, C.W, Schulz, G.E. 登録日 1991-11-08 公開日 1994-01-31 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state. J.Mol.Biol., 224, 1992
3FB4	Crystal structure of adenylate kinase from Marinibacillus marinus 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION 著者 Davlieva, M.G, Shamoo, Y. 登録日 2008-11-18 公開日 2009-09-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus. Acta Crystallogr.,Sect.F, 65, 2009
3HPR	Crystal structure of V148G adenylate kinase from E. coli, in complex with Ap5A 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Hilser, V.J, Travis, T.P, Bolen, D.W. 登録日 2009-06-04 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins. Proc.Natl.Acad.Sci.USA, 106, 2009
4UKD	UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP, BERYLLIUM FLUORIDE 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM DIFLUORIDE, MAGNESIUM ION, ... 著者 Schlichting, I, Reinstein, J. 登録日 1997-05-20 公開日 1998-05-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of active conformations of UMP kinase from Dictyostelium discoideum suggest phosphoryl transfer is associative. Biochemistry, 36, 1997
5X6I	Crystal structure of B. subtilis adenylate kinase variant 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ... 著者 Moon, S, Bae, E. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Struct Dyn., 6, 2019

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