PDB: 68717 件ウェブページステータス検索Chemie searchBIRD

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8QMR	Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde 分子名称: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 著者 He, H, Zarzycki, J, Erb, T.J. 登録日 2023-09-25 公開日 2024-10-02 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QMT	Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+, succinic semialdehyde 分子名称: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 著者 He, H, Zarzycki, J, Erb, T.J. 登録日 2023-09-25 公開日 2024-10-02 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QMS	Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+ 分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 著者 He, H, Zarzycki, J, Erb, T.J. 登録日 2023-09-25 公開日 2024-10-02 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QCZ	Cryo-EM structure of the outward-facing heme-bound FLVCR2 分子名称: Heme transporter FLVCR2, PROTOPORPHYRIN IX CONTAINING FE 著者 Weng, T.-H, Wu, D, Safarian, S. 登録日 2023-08-28 公開日 2024-09-11 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM structure of the outward-facing heme-bound FLVCR2 To Be Published
5C1C	Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form 分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ... 著者 Jameson, G.B, Williams, M.A.K, Loo, T.S, Kent, L.M, Melton, L.D, Mercadante, D. 登録日 2015-06-13 公開日 2015-07-01 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control. J.Biol.Chem., 291, 2016
5C1X	Crystal structure of EV71 3C Proteinase in complex with Compound VIII 分子名称: (phenylmethyl) N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate, 3C proteinase 著者 Zhang, L, Huang, G, Cai, Q, Zhao, C, Ren, H, Li, P, Li, N, Chen, S, Li, J, Lin, T. 登録日 2015-06-15 公開日 2016-06-01 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Optimize the interactions at S4 with efficient inhibitors targeting 3C proteinase from enterovirus 71 J.Mol.Recognit., 29, 2016
8Q6T	Helical reconstruction of the relaxed thick filament from FIB milled left ventricular mouse myofibrils 分子名称: Myosin binding protein C, cardiac, Myosin light chain 3, ... 著者 Tamborrini, D, Raunser, S. 登録日 2023-08-14 公開日 2023-11-01 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 Structure of the native myosin filament in the relaxed cardiac sarcomere. Nature, 623, 2023
8QCB	CryoEM structure of a S. Cerevisiae Ski2387 complex in the open state 分子名称: Antiviral helicase SKI2, Antiviral protein SKI8, Superkiller protein 3, ... 著者 Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. 登録日 2023-08-25 公開日 2023-11-08 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
5BZH	Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule 分子名称: 3-(3,4-dihydroisoquinolin-2(1H)-yl)propan-1-amine, CD44 antigen, DIMETHYL SULFOXIDE 著者 Liu, L.K, Finzel, B.C. 登録日 2015-06-11 公開日 2016-06-29 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule To Be Published
3FYC	Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi 分子名称: PHOSPHATE ION, Probable dimethyladenosine transferase 著者 Scarsdale, J.N, Musayev, F.N, Rife, J.P. 登録日 2009-01-22 公開日 2009-06-30 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases. J.Mol.Biol., 391, 2009
3GP8	Crystal structure of the binary complex of RecD2 with DNA 分子名称: 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... 著者 Saikrishnan, K, Cook, N, Wigley, D.B. 登録日 2009-03-23 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
5A6J	GH20C, Beta-hexosaminidase from Streptococcus pneumoniae 分子名称: 1,2-ETHANEDIOL, N-ACETYL-BETA-D-GLUCOSAMINIDASE 著者 Cid, M, Robb, C.S, Higgins, M.A, Boraston, A.B. 登録日 2015-06-26 公開日 2015-09-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 A Second beta-Hexosaminidase Encoded in the Streptococcus pneumoniae Genome Provides an Expanded Biochemical Ability to Degrade Host Glycans. J. Biol. Chem., 290, 2015
3GNU	Toxin fold as basis for microbial attack and plant defense 分子名称: 25 kDa protein elicitor, CHLORIDE ION, GUANIDINE 著者 Ottmann, C, Luberacki, B, Kuefner, I, Koch, W, Brunner, F, Weyand, M, Mattinen, L, Pirhonen, M, Anderluh, G, Seitz, H.U, Nuernberger, T, Oecking, C. 登録日 2009-03-18 公開日 2009-06-09 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A common toxin fold mediates microbial attack and plant defense Proc.Natl.Acad.Sci.USA, 106, 2009
5B05	Lysozyme (control experiment) 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... 著者 Kita, A, Morimoto, Y. 登録日 2015-10-28 公開日 2016-01-13 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes Mol Biotechnol., 58, 2016
5CMX	X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer 分子名称: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, POTASSIUM ION, RE31, ... 著者 Russo Krauss, I, Pica, A, Napolitano, V, Sica, F. 登録日 2015-07-17 公開日 2016-01-13 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Different duplex/quadruplex junctions determine the properties of anti-thrombin aptamers with mixed folding. Nucleic Acids Res., 44, 2016
3GWG	Crystal structure of CheY of Helicobacter pylori 分子名称: Chemotaxis protein cheY homolog, MAGNESIUM ION, SULFATE ION 著者 Lam, K.H, Ling, T.K, Au, S.W. 登録日 2009-04-01 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of activated CheY1 from Helicobacter pylori. J.Bacteriol., 192, 2010
3GJP	Crystal structure of mutant coiled coil GCN4 leucine zipper 分子名称: General control protein GCN4 著者 Honnappa, S, Steinmetz, M.O. 登録日 2009-03-09 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular basis of coiled-coil oligomerization-state specificity Proc.Natl.Acad.Sci.USA, 107, 2010
5B1Z	Crystal structure of Bcl-xL in complex with HBx-BH3 motif 分子名称: Bcl-2-like protein 1, Peptide from Protein X 著者 Yuan, Y.A. 登録日 2015-12-22 公開日 2016-12-28 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of Bcl-xL in complex with HBx-BH3 motif To Be Published
5B59	Hen egg-white lysozyme modified with a keto-ABNO. 分子名称: (1~{S},5~{R})-9-oxidanyl-9-azabicyclo[3.3.1]nonan-3-one, Lysozyme C 著者 Sasaki, D, Seki, Y, Sohma, Y, Oisaki, K, Kanai, M. 登録日 2016-04-28 公開日 2016-09-14 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Transition Metal-Free Tryptophan-Selective Bioconjugation of Proteins J.Am.Chem.Soc., 138, 2016
5B06	Lysozyme (denatured by NaOD and refolded) 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... 著者 Kita, A, Morimoto, Y. 登録日 2015-10-28 公開日 2016-01-13 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes Mol Biotechnol., 58, 2016
5CK7	Mouse ADP-dependent Glucokinase; AMP bound 分子名称: ADENOSINE MONOPHOSPHATE, ADP-dependent glucokinase 著者 Richter, J.P, Ronimus, R.S, Sutherland-Smith, A.J. 登録日 2015-07-15 公開日 2015-11-18 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The Structural and Functional Characterization of Mammalian ADP-dependent Glucokinase. J.Biol.Chem., 291, 2016
3GRU	Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1 分子名称: ADENOSINE MONOPHOSPHATE, Dimethyladenosine transferase, SULFATE ION 著者 Scarsdale, J.N, Musayev, F.N, Rife, J.P. 登録日 2009-03-26 公開日 2010-03-31 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
3K3U	The V59W mutation blocks the distal pocket of the hemoglobin dehaloperoxidase from Amphitrite ornata 分子名称: Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION 著者 de Serrano, V, Davis, M.F, Franzen, S. 登録日 2009-10-05 公開日 2010-11-03 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 The V59W mutation blocks the distal pocket of the hemoglobin dehaloperoxidase from Amphitrite ornata To be Published
3H1F	Crystal structure of CheY mutant D53A of Helicobacter pylori 分子名称: Chemotaxis protein cheY homolog, MAGNESIUM ION, SULFATE ION 著者 Lam, K.H, Ling, T.K, Au, S.W. 登録日 2009-04-12 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of activated CheY1 from Helicobacter pylori. J.Bacteriol., 192, 2010
3H3P	Crystal structure of HIV epitope-scaffold 4E10 Fv complex 分子名称: 4E10_S0_1TJLC_004_N, CALCIUM ION, Fv 4E10 heavy chain, ... 著者 Holmes, M.A. 登録日 2009-04-16 公開日 2010-01-19 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Interactions between lipids and human anti-HIV antibody 4E10 can be reduced without ablating neutralizing activity J.Virol., 84, 2010

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