PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4DSJ	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ... 著者 Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z. 登録日 2012-02-19 公開日 2013-03-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published
2JOX	Embryonic Neural Inducing Factor Churchill is not a DNA-Binding Zinc Finger Protein: Solution Structure Reveals a Solvent-Exposed beta-Sheet and Zinc Binuclear Cluster 分子名称: Churchill protein, ZINC ION 著者 Lee, B.M, Buck-Koehntop, B.A, Martinez-Yamout, M.A, Gottesfeld, J.M, Dyson, H, Wright, P.E. 登録日 2007-04-07 公開日 2007-08-21 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Embryonic Neural Inducing Factor Churchill Is not a DNA-binding Zinc Finger Protein: Solution Structure Reveals a Solvent-exposed beta-Sheet and Zinc Binuclear Cluster J.Mol.Biol., 371, 2007
1U78	Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA 分子名称: 26-MER, transposable element tc3 transposase 著者 Watkins, S, van Pouderoyen, G, Sixma, T.K. 登録日 2004-08-03 公開日 2004-08-31 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Structural analysis of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA Nucleic Acids Res., 32, 2004
4DSI	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA, ... 著者 Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z. 登録日 2012-02-19 公開日 2013-03-27 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published
1LE8	Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex 分子名称: 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3', MATING-TYPE PROTEIN A-1, ... 著者 Ke, A, Mathias, J.R, Vershon, A.K, Wolberger, C. 登録日 2002-04-09 公開日 2002-05-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural and Thermodynamic Characterization of the DNA Binding Properties of a Triple Alanine Mutant of MATalpha2 Structure, 10, 2002
3TAR	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position 分子名称: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3', DNA polymerase I, ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-04 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
8AAJ	Crystal structure of the Pyrococcus abyssi RPA (apo form) 分子名称: RPA14 subunit of the hetero-oligomeric complex involved in homologous recombination, RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination, Replication factor A, ... 著者 Legrand, P, Madru, C, Sauguet, L. 登録日 2022-07-01 公開日 2023-05-03 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 DNA-binding mechanism and evolution of replication protein A. Nat Commun, 14, 2023
4Z7Z	Structure of the enzyme-product complex resulting from TDG action on a GT mismatch in the presence of excess base 分子名称: 1,2-ETHANEDIOL, ACETIC ACID, DNA (28-MER), ... 著者 Pozharski, E, Malik, S.S, Drohat, A.C. 登録日 2015-04-08 公開日 2015-09-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA. Nucleic Acids Res., 43, 2015
3TAP	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-3) Position 分子名称: 5'-D(*G*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', DNA polymerase I, ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-04 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.655 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3TAQ	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-4) Position 分子名称: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*C*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*G)-3', DNA polymerase I, ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-04 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
1CVX	CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG 分子名称: 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3', HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE 著者 Kielkopf, C.L, Bremer, R.E, White, S, Baird, E.E, Dervan, P.B, Rees, D.C. 登録日 1999-08-24 公開日 2000-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove. J.Mol.Biol., 295, 2000
4ELV	Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*AP*AP*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ... 著者 Marx, A, Diederichs, K, Obeid, S. 登録日 2012-04-11 公開日 2013-04-24 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines To be Published
2D7D	Structural insights into the cryptic DNA dependent ATP-ase activity of UvrB 分子名称: 40-mer from UvrABC system protein B, 5'-D(P*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Barrett, T.E. 登録日 2005-11-18 公開日 2006-05-02 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural insights into the cryptic DNA-dependent ATPase activity of UvrB J.Mol.Biol., 357, 2006
3TI0	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddGTP-dC in Closed Conformation 分子名称: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*C*AP*TP*CP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3', ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-19 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3TAN	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-1) Position 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*AP*CP*GP*T*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*C)-3', ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-04 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3THV	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddATP-dT in Closed Conformation 分子名称: 2',3'-dideoxyadenosine triphosphate, 5'-D(*C*AP*TP*TP*TP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DA))-3', ... 著者 Wang, W, Beese, L.S. 登録日 2011-08-19 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.611 Å) 主引用文献 Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
8B4J	Rfa1-N-terminal domain in complex with phosphorylated Ddc2 分子名称: 1,2-ETHANEDIOL, DNA damage checkpoint protein LCD1, Replication factor A protein 1, ... 著者 Yates, L.A, Zhang, X. 登録日 2022-09-20 公開日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 A DNA damage-induced phosphorylation circuit enhances Mec1 ATR Ddc2 ATRIP recruitment to Replication Protein A. Proc.Natl.Acad.Sci.USA, 120, 2023
8OMA	MutSbeta bound to 61bp homoduplex DNA 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-31 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.29 Å) 主引用文献 MutSbeta bound to 61bp homoduplex DNA To Be Published
8C5Y	RPA tetrameric supercomplex from Pyrococcus abyssi 分子名称: RPA14 subunit of the hetero-oligomeric complex involved in homologous recombination, RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination, Replication factor A, ... 著者 Madru, C, Martinez-Carranza, M, Legrand, P, Sauguet, L. 登録日 2023-01-10 公開日 2023-05-03 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 DNA-binding mechanism and evolution of replication protein A. Nat Commun, 14, 2023
1NKP	Crystal structure of Myc-Max recognizing DNA 分子名称: 5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3', Max protein, Myc proto-oncogene protein 著者 Nair, S.K, Burley, S.K. 登録日 2003-01-03 公開日 2003-02-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors Cell(Cambridge,Mass.), 112, 2003
6F59	Crystal structure of human Brachyury (T) G177D variant in complex with DNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Brachyury protein, DNA (26-MER), ... 著者 Newman, J.A, Gavard, A.E, Krojer, T, Shrestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-12-01 公開日 2017-12-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.151 Å) 主引用文献 Crystal structure of human Brachyury (T) G177D variant in complex with DNA To Be Published
8OM9	MutSbeta bound to (CAG)2 DNA (open form) 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-31 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.32 Å) 主引用文献 MutSbeta bound to (CAG)2 DNA (open form) To Be Published
4BT0	MuB is an AAAplus ATPase that forms helical filaments to control target selection for DNA transposition 分子名称: ADENOSINE-5'-DIPHOSPHATE, TRANSCRIPTIONAL REGULATOR 著者 Mizuno, N, Dramicanin, M, Mizuuchi, M, Adam, J, Wang, Y, Han, Y.W, Yang, W, Steven, A.C, Mizuuchi, K, Ramon-Maiques, S. 登録日 2013-06-12 公開日 2013-07-03 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (17 Å) 主引用文献 Mub is an Aaa+ ATPase that Forms Helical Filaments to Control Target Selection for DNA Transposition. Proc.Natl.Acad.Sci.USA, 110, 2013
3ZQ7	The Structure of DNA-binding domain of response regulator from Escherichia coli K-12 分子名称: KDP OPERON TRANSCRIPTIONAL REGULATORY PROTEIN KDPE 著者 Patil, D.N, Tomar, S, Kumar, P. 登録日 2011-06-08 公開日 2012-03-21 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structure-Function Studies of DNA Binding Domain of Response Regulator Kdpe Reveals Equal Affinity Interactions at DNA Half-Sites. Plos One, 7, 2012
7OLI	Crystal structure of Pab-AGOG in complex with 8-oxoguanosine 分子名称: 1,2-ETHANEDIOL, 2'-DEOXY-8-OXOGUANOSINE, N-glycosylase/DNA lyase 著者 Coste, F, Goffinont, S, Flament, D, Castaing, B. 登録日 2021-05-20 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Res., 50, 2022

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