PDB: 17012 件ウェブページステータス検索Chemie searchBIRD

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4I0A	structure of the mutant Catabolite gene activator protein V132A 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M.J. 登録日 2012-11-16 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
4HSB	S. pombe 3-methyladenine DNA glycosylase-like protein Mag2 bound to damaged DNA 分子名称: DI(HYDROXYETHYL)ETHER, DNA (5'-D(P*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3'), ... 著者 Adhikary, S, Eichman, B.F. 登録日 2012-10-29 公開日 2013-01-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe. Dna Repair, 12, 2013
4HZF	structure of the wild type Catabolite gene Activator Protein 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL, ... 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M. 登録日 2012-11-15 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
4L19	Matrix metalloproteinase-13 complexed with selective inhibitor compound Q1 分子名称: 2-[(4-methylbenzyl)sulfanyl]-3,5,6,7-tetrahydro-4H-cyclopenta[d]pyrimidin-4-one, CALCIUM ION, Collagenase 3, ... 著者 Minond, D, Spicer, T.P, Jiang, J, Taylor, A.B, Hart, P.J, Roush, W.R, Fields, G.B, Hodder, P.S. 登録日 2013-06-02 公開日 2014-12-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Characterization of selective exosite-binding inhibitors of matrix metalloproteinase 13 that prevent articular cartilage degradation in vitro. J.Med.Chem., 57, 2014
4HUO	Structure of Ricin A chain bound with N-(N-(pterin-7-yl)carbonylglycyl)-L-phenylalanine 分子名称: N-[(2-amino-4-oxo-1,4-dihydropteridin-7-yl)carbonyl]glycyl-L-phenylalanine, Ricin 著者 Jasheway, K.R, Monzingo, A.F, Saito, R, Pruet, J.M, Manzano, L.A, Wiget, P.A, Anslyn, E.V, Robertus, J.D. 登録日 2012-11-02 公開日 2012-12-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Peptide-conjugated pterins as inhibitors of ricin toxin A. J.Med.Chem., 56, 2013
4LB1	Crystal structure of human alpha-defensin 1 (HNP1) Y16A/F28A mutant 分子名称: Neutrophil defensin 1 著者 Tolbert, W.D, Wu, X, Pazgier, M. 登録日 2013-06-20 公開日 2013-11-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Single, Double and Quadruple Alanine Substitutions at Oligomeric Interfaces Identify Hydrophobicity as the Key Determinant of Human Neutrophil Alpha Defensin HNP1 Function. Plos One, 8, 2013
4I02	structure of the mutant Catabolite gene activator protein V140A 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M.J. 登録日 2012-11-16 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
4IAP	Crystal structure of PH domain of Osh3 from Saccharomyces cerevisiae 分子名称: Oxysterol-binding protein homolog 3,Endolysin,Oxysterol-binding protein homolog 3, SULFATE ION 著者 Tong, J, Im, Y.J. 登録日 2012-12-07 公開日 2013-07-31 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of osh3 reveals a conserved mode of phosphoinositide binding in oxysterol-binding proteins Structure, 21, 2013
4L9O	Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... 著者 McMahon, C, Jeffrey, P.D, Hughson, F.M. 登録日 2013-06-18 公開日 2013-10-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Sec16 influences transitional ER sites by regulating rather than organizing COPII. Mol Biol Cell, 24, 2013
4IBG	Ebola virus VP35 bound to small molecule 分子名称: GLYCEROL, PHOSPHATE ION, Polymerase cofactor VP35, ... 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.413 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4IBB	Ebola virus VP35 bound to small molecule 分子名称: Polymerase cofactor VP35, {4-[(5R)-3-hydroxy-2-oxo-4-(thiophen-2-ylcarbonyl)-5-(2,4,5-trimethylphenyl)-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2012-12-08 公開日 2014-02-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.752 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4IEM	Human apurinic/apyrimidinic endonuclease (APE1) with product DNA and Mg2+ 分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*C)-3'), DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3'), ... 著者 Tsutakawa, S.E, Mol, C.D, Arvai, A.S, Tainer, J.A. 登録日 2012-12-13 公開日 2013-01-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3936 Å) 主引用文献 Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes. J.Biol.Chem., 288, 2013
4IBD	Ebola virus VP35 bound to small molecule 分子名称: 5-[(2R)-3-benzoyl-2-(4-bromothiophen-2-yl)-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]-2-methylbenzoic acid, GLYCEROL, MAGNESIUM ION, ... 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4LJH	Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with 1-Methyl-3-indolyl-b-D-galactopyranoside at 1.45 A Resolution 分子名称: 1-methyl-1H-indol-3-ol, CALCIUM ION, PA-I galactophilic lectin, ... 著者 Kadam, R.U, Stocker, A, Reymond, J.L. 登録日 2013-07-04 公開日 2013-10-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 CH-pi "T-Shape" Interaction with Histidine Explains Binding of Aromatic Galactosides to Pseudomonas aeruginosa Lectin LecA Acs Chem.Biol., 8, 2013
4INQ	Crystal structure of Osh3 ORD in complex with PI(4)P from Saccharomyces cerevisiae 分子名称: (2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Oxysterol-binding protein homolog 3 著者 Tong, J, Im, Y.J. 登録日 2013-01-05 公開日 2013-07-31 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of osh3 reveals a conserved mode of phosphoinositide binding in oxysterol-binding proteins Structure, 21, 2013
4LDC	Crystal Structure of DOC2B C2B domain 分子名称: CALCIUM ION, CITRATE ANION, Double C2-like domain-containing protein beta 著者 Giladi, M, Almagor, L, Hirsch, J.A. 登録日 2013-06-24 公開日 2013-09-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.264 Å) 主引用文献 The C2B Domain Is the Primary Ca(2+) Sensor in DOC2B: A Structural and Functional Analysis. J.Mol.Biol., 425, 2013
4IBJ	Ebola virus VP35 bound to small molecule 分子名称: 3-{(5S)-3-hydroxy-2-oxo-4-[3-(trifluoromethyl)benzoyl]-5-[3-(trifluoromethyl)phenyl]-2,5-dihydro-1H-pyrrol-1-yl}benzoic acid, Polymerase cofactor VP35 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4IBI	Ebola virus VP35 bound to small molecule 分子名称: 3-{(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-4-hydroxy-5-oxo-3-[3-(trifluoromethyl)benzoyl]-2,5-dihydro-1H-pyrrol-1-yl}benzoic acid, Polymerase cofactor VP35 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.473 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4LK7	Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with Resorufin-b-D-galactopyranoside at 1.76 A Resolution 分子名称: 7-hydroxy-3H-phenoxazin-3-one, CALCIUM ION, PA-I galactophilic lectin, ... 著者 Kadam, R.U, Stocker, A, Reymond, J.L. 登録日 2013-07-06 公開日 2013-10-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.758 Å) 主引用文献 CH-pi "T-Shape" Interaction with Histidine Explains Binding of Aromatic Galactosides to Pseudomonas aeruginosa Lectin LecA Acs Chem.Biol., 8, 2013
4IBC	Ebola virus VP35 bound to small molecule 分子名称: DIMETHYL SULFOXIDE, Polymerase cofactor VP35, {4-[(2R)-3-(2-chlorobenzoyl)-2-(2-chlorophenyl)-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid 著者 Brown, C.S, Leung, D.W, Xu, W, Borek, D.M, Otwinowski, Z, Ramanan, P, Stubbs, A.J, Peterson, D.S, Binning, J.M, Amarasinghe, G.K. 登録日 2012-12-08 公開日 2014-03-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.745 Å) 主引用文献 In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity. J.Mol.Biol., 426, 2014
4LCV	Crystal Structure of DOC2B C2A domain 分子名称: BETA-MERCAPTOETHANOL, CALCIUM ION, CITRATE ANION, ... 著者 Giladi, M, Almagor, L, Hirsch, J.A. 登録日 2013-06-23 公開日 2013-09-11 最終更新日 2013-11-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The C2B Domain Is the Primary Ca(2+) Sensor in DOC2B: A Structural and Functional Analysis. J.Mol.Biol., 425, 2013
4IC4	Crystal structure of Osh3 ORD from Saccharomyces cerevisiae 分子名称: Oxysterol-binding protein homolog 3 著者 Tong, J, Im, Y.J. 登録日 2012-12-09 公開日 2013-07-31 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of osh3 reveals a conserved mode of phosphoinositide binding in oxysterol-binding proteins Structure, 21, 2013
4KXZ	crystal structure of tgfb2 in complex with GC2008. 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, GC1008 Heavy Chain, ... 著者 Mathieu, M, Moulin, A.G, Wei, R. 登録日 2013-05-28 公開日 2014-09-24 最終更新日 2014-12-03 実験手法 X-RAY DIFFRACTION (2.83 Å) 主引用文献 Structures of a pan-specific antagonist antibody complexed to different isoforms of TGF beta reveal structural plasticity of antibody-antigen interactions. Protein Sci., 23, 2014
4QU7	Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution 分子名称: G-rich sequence factor 1, RNA 5'-(*AP*GP*GP*GP*AP*UP)-3' 著者 Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) 登録日 2014-07-10 公開日 2014-08-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 2.50 A resolution To be published
8JCD	Human H2BFWTH100R nucleosome with 601 DNA 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ... 著者 Ding, D.B, Ishibashi, T, Nguyen, T.T. 登録日 2023-05-11 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 Human H2BFWTH100R nucleosome with 601 DNA to be published

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