1IYR
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![BU of 1iyr by Molmil](/molmil-images/mine/1iyr) | NMR Structure Ensemble Of Dff-C Domain | 分子名称: | DNA FRAGMENTATION FACTOR ALPHA SUBUNIT | 著者 | Fukushima, K, Kikuchi, J, Koshiba, S, Kigawa, T, Kuroda, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2002-09-05 | 公開日 | 2002-09-25 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of the Dff-C Domain of Dff45/Icad. A Structural Basis for the Regulation of Apoptotic DNA Fragmentation J.Mol.Biol., 321, 2002
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2EBW
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![BU of 2ebw by Molmil](/molmil-images/mine/2ebw) | |
1YFL
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![BU of 1yfl by Molmil](/molmil-images/mine/1yfl) | T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base | 分子名称: | 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3', DNA adenine methylase, SINEFUNGIN | 著者 | Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. | 登録日 | 2005-01-03 | 公開日 | 2005-05-17 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (3.09 Å) | 主引用文献 | Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
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4IOU
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![BU of 4iou by Molmil](/molmil-images/mine/4iou) | |
3QKT
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![BU of 3qkt by Molmil](/molmil-images/mine/3qkt) | Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP | 分子名称: | DNA double-strand break repair rad50 ATPase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 著者 | Williams, G.J, Williams, R.S, Arvai, A, Moncalian, G, Tainer, J.A. | 登録日 | 2011-02-01 | 公開日 | 2011-03-30 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair. Nat.Struct.Mol.Biol., 18, 2011
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2NBQ
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1YF3
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![BU of 1yf3 by Molmil](/molmil-images/mine/1yf3) | T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact | 分子名称: | 5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3', DNA adenine methylase, ... | 著者 | Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. | 登録日 | 2004-12-30 | 公開日 | 2005-05-17 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.29 Å) | 主引用文献 | Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
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1YFJ
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![BU of 1yfj by Molmil](/molmil-images/mine/1yfj) | T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact | 分子名称: | 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3', CALCIUM ION, CHLORIDE ION, ... | 著者 | Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. | 登録日 | 2005-01-02 | 公開日 | 2005-05-17 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | 主引用文献 | Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
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2A1J
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![BU of 2a1j by Molmil](/molmil-images/mine/2a1j) | Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1 | 分子名称: | DNA excision repair protein ERCC-1, DNA repair endonuclease XPF, MERCURY (II) ION | 著者 | Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T. | 登録日 | 2005-06-20 | 公開日 | 2005-08-02 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005
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2A1I
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![BU of 2a1i by Molmil](/molmil-images/mine/2a1i) | Crystal Structure of the Central Domain of Human ERCC1 | 分子名称: | DNA excision repair protein ERCC-1, MERCURY (II) ION | 著者 | Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T. | 登録日 | 2005-06-20 | 公開日 | 2005-08-02 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005
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6ESF
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![BU of 6esf by Molmil](/molmil-images/mine/6esf) | Nucleosome : Class 1 | 分子名称: | DNA (147-MER), Histone H2A, Histone H2B 1.1, ... | 著者 | Bilokapic, S, Halic, M. | 登録日 | 2017-10-20 | 公開日 | 2017-12-20 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESG
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![BU of 6esg by Molmil](/molmil-images/mine/6esg) | Nucleosome breathing : Class 2 | 分子名称: | DNA (141-MER), Histone H2A, Histone H2B 1.1, ... | 著者 | Bilokapic, S, Halic, M. | 登録日 | 2017-10-20 | 公開日 | 2017-12-20 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (5.4 Å) | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESH
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![BU of 6esh by Molmil](/molmil-images/mine/6esh) | Nucleosome breathing : Class 3 | 分子名称: | DNA (137-MER), Histone H2A, Histone H2B 1.1, ... | 著者 | Bilokapic, S, Halic, M. | 登録日 | 2017-10-20 | 公開日 | 2017-12-20 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (5.1 Å) | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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6ESI
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![BU of 6esi by Molmil](/molmil-images/mine/6esi) | Nucleosome breathing : Class 4 | 分子名称: | DNA (133-MER), Histone H2A, Histone H2B 1.1, ... | 著者 | Bilokapic, S, Halic, M. | 登録日 | 2017-10-20 | 公開日 | 2017-12-20 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (6.3 Å) | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
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7URK
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8DXV
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![BU of 8dxv by Molmil](/molmil-images/mine/8dxv) | [T:Au+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s | 分子名称: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | 著者 | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | 登録日 | 2022-08-03 | 公開日 | 2023-08-09 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (4.59 Å) | 主引用文献 | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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8DXX
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![BU of 8dxx by Molmil](/molmil-images/mine/8dxx) | [T:Au+:T--(pH11-pH7; 45s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 45s | 分子名称: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | 著者 | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | 登録日 | 2022-08-03 | 公開日 | 2023-08-09 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (4.07 Å) | 主引用文献 | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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8DXY
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![BU of 8dxy by Molmil](/molmil-images/mine/8dxy) | [T:Au+:T--(pH11-pH7; 180s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 180s | 分子名称: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | 著者 | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | 登録日 | 2022-08-03 | 公開日 | 2023-08-09 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (4.87 Å) | 主引用文献 | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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8DXW
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![BU of 8dxw by Molmil](/molmil-images/mine/8dxw) | [T:Au+:T--(pH11-pH7; 15s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 15s | 分子名称: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | 著者 | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | 登録日 | 2022-08-03 | 公開日 | 2023-08-09 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (4.52 Å) | 主引用文献 | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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8DXZ
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![BU of 8dxz by Molmil](/molmil-images/mine/8dxz) | [T:Au+:T--(pH11-pH7; 420s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 420s | 分子名称: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | 著者 | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | 登録日 | 2022-08-03 | 公開日 | 2023-08-09 | 最終更新日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (4.71 Å) | 主引用文献 | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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4ZVI
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![BU of 4zvi by Molmil](/molmil-images/mine/4zvi) | GYRASE B IN COMPLEX WITH 4,5-DIBROMOPYRROLAMIDE-BASED INHIBITOR | 分子名称: | DNA gyrase subunit B, IODIDE ION, N-(4-{[(4,5-dibromo-1H-pyrrol-2-yl)carbonyl]amino}benzoyl)glycine | 著者 | Zidar, N, Macut, H, Tomasic, T, Brvar, M, Montalvao, S, Tammela, P, Solmajer, T, Peterlin Masic, L, Ilas, J, Kikelj, D. | 登録日 | 2015-05-18 | 公開日 | 2015-07-15 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | N-Phenyl-4,5-dibromopyrrolamides and N-Phenylindolamides as ATP Competitive DNA Gyrase B Inhibitors: Design, Synthesis, and Evaluation. J.Med.Chem., 58, 2015
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8CRZ
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![BU of 8crz by Molmil](/molmil-images/mine/8crz) | |
6DY9
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5DA7
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![BU of 5da7 by Molmil](/molmil-images/mine/5da7) | monomeric PCNA bound to a small protein inhibitor | 分子名称: | DNA polymerase sliding clamp 1, Proliferating cell nuclear antigen, SULFATE ION, ... | 著者 | Ladner, J.E, Altieri, A.S, Kelman, Z. | 登録日 | 2015-08-19 | 公開日 | 2016-05-11 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.802 Å) | 主引用文献 | A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp. Nucleic Acids Res., 44, 2016
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1WEW
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![BU of 1wew by Molmil](/molmil-images/mine/1wew) | Solution structure of PHD domain in DNA-binding family protein AAM98074 | 分子名称: | DNA-binding family protein, ZINC ION | 著者 | He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2004-05-25 | 公開日 | 2004-11-25 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of PHD domain in DNA-binding family protein AAM98074 To be Published
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