PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1IYR	NMR Structure Ensemble Of Dff-C Domain 分子名称: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT 著者 Fukushima, K, Kikuchi, J, Koshiba, S, Kigawa, T, Kuroda, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2002-09-05 公開日 2002-09-25 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the Dff-C Domain of Dff45/Icad. A Structural Basis for the Regulation of Apoptotic DNA Fragmentation J.Mol.Biol., 321, 2002
2EBW	Solution structure of the BRCT domain from human DNA repair protein REV1 分子名称: DNA repair protein REV1 著者 Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-02-09 公開日 2007-08-14 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the BRCT domain from human DNA repair protein REV1 To be Published
1YFL	T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base 分子名称: 5'-D(P*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*GP*A)-3', DNA adenine methylase, SINEFUNGIN 著者 Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. 登録日 2005-01-03 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
4IOU	Crystal structure of the HIV-1 Vif binding, catalytically active domain of APOBEC3F 分子名称: DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION 著者 Bohn, M, Shandilya, S.M.D, Schiffer, C.A. 登録日 2013-01-08 公開日 2013-05-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.751 Å) 主引用文献 Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain. Structure, 21, 2013
3QKT	Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP 分子名称: DNA double-strand break repair rad50 ATPase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Williams, G.J, Williams, R.S, Arvai, A, Moncalian, G, Tainer, J.A. 登録日 2011-02-01 公開日 2011-03-30 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair. Nat.Struct.Mol.Biol., 18, 2011
2NBQ	NMR Structure of the C-Terminal Domain of human APOBEC3B 分子名称: DNA dC->dU-editing enzyme APOBEC-3B, ZINC ION 著者 Byeon, I.L, Byeon, C, Gronenborn, A.M. 登録日 2016-03-09 公開日 2016-06-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Nuclear Magnetic Resonance Structure of the APOBEC3B Catalytic Domain: Structural Basis for Substrate Binding and DNA Deaminase Activity. Biochemistry, 55, 2016
1YF3	T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact 分子名称: 5'-D(*AP*CP*CP*AP*TP*GP*AP*TP*CP*TP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*AP*GP*AP*TP*CP*AP*TP*GP*G)-3', DNA adenine methylase, ... 著者 Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. 登録日 2004-12-30 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
1YFJ	T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact 分子名称: 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3', CALCIUM ION, CHLORIDE ION, ... 著者 Horton, J.R, Liebert, K, Hattman, S, Jeltsch, A, Cheng, X. 登録日 2005-01-02 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.), 121, 2005
2A1J	Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1 分子名称: DNA excision repair protein ERCC-1, DNA repair endonuclease XPF, MERCURY (II) ION 著者 Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T. 登録日 2005-06-20 公開日 2005-08-02 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005
2A1I	Crystal Structure of the Central Domain of Human ERCC1 分子名称: DNA excision repair protein ERCC-1, MERCURY (II) ION 著者 Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T. 登録日 2005-06-20 公開日 2005-08-02 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005
6ESF	Nucleosome : Class 1 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESG	Nucleosome breathing : Class 2 分子名称: DNA (141-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.4 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESH	Nucleosome breathing : Class 3 分子名称: DNA (137-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESI	Nucleosome breathing : Class 4 分子名称: DNA (133-MER), Histone H2A, Histone H2B 1.1, ... 著者 Bilokapic, S, Halic, M. 登録日 2017-10-20 公開日 2017-12-20 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
7URK	Self-assembling DNA tensegrity triangle motif with intercalating internal Cy3 modification 分子名称: DNA (5'-D(*GP*AP*GP*CP*A*(96T)P*GP*CP*CP*TP*GP*TP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3'), DNA (5'-D(P*AP*CP*AP*CP*CP*GP*T)-3'), ... 著者 Sha, R, Vecchioni, S. 登録日 2022-04-22 公開日 2023-04-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Self-assembling DNA tensegrity triangle motif with intercalating internal Cy3 modification To Be Published
8DXV	[T:Au+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-08-03 公開日 2023-08-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.59 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
8DXX	[T:Au+:T--(pH11-pH7; 45s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 45s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-08-03 公開日 2023-08-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.07 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
8DXY	[T:Au+:T--(pH11-pH7; 180s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 180s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-08-03 公開日 2023-08-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.87 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
8DXW	[T:Au+:T--(pH11-pH7; 15s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 15s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-08-03 公開日 2023-08-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.52 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
8DXZ	[T:Au+:T--(pH11-pH7; 420s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 420s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-08-03 公開日 2023-08-09 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.71 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
4ZVI	GYRASE B IN COMPLEX WITH 4,5-DIBROMOPYRROLAMIDE-BASED INHIBITOR 分子名称: DNA gyrase subunit B, IODIDE ION, N-(4-{[(4,5-dibromo-1H-pyrrol-2-yl)carbonyl]amino}benzoyl)glycine 著者 Zidar, N, Macut, H, Tomasic, T, Brvar, M, Montalvao, S, Tammela, P, Solmajer, T, Peterlin Masic, L, Ilas, J, Kikelj, D. 登録日 2015-05-18 公開日 2015-07-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 N-Phenyl-4,5-dibromopyrrolamides and N-Phenylindolamides as ATP Competitive DNA Gyrase B Inhibitors: Design, Synthesis, and Evaluation. J.Med.Chem., 58, 2015
8CRZ	Crystal structure of alien DNA CTSZZPBSBSZPPBAG in a tetragonal lattice 分子名称: DNA (5'-D(*CP*TP*(JSP)P*(1W5)P*(1W5)P*(1WA)P*(IGU)P*(JSP))-3'), DNA (5'-D(P*(IGU)P*(JSP)P*(1W5)P*(1WA)P*(1WA)P*(IGU)P*AP*G)-3') 著者 Georgiadis, M.M. 登録日 2022-05-12 公開日 2023-05-17 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Alien DNA visualized at high resolution in A- and B-forms To Be Published
6DY9	Crystal structure of double-stranded DNA GGGATCCC; crystals grown in Zn2+ 分子名称: DNA (5'-D(*GP*GP*GP*AP*TP*CP*CP*C)-3'), ZINC ION 著者 Hou, C, Tsodikov, O.V. 登録日 2018-07-01 公開日 2019-01-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction Acta Crystallogr.,Sect.D, 75, 2019
5DA7	monomeric PCNA bound to a small protein inhibitor 分子名称: DNA polymerase sliding clamp 1, Proliferating cell nuclear antigen, SULFATE ION, ... 著者 Ladner, J.E, Altieri, A.S, Kelman, Z. 登録日 2015-08-19 公開日 2016-05-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.802 Å) 主引用文献 A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp. Nucleic Acids Res., 44, 2016
1WEW	Solution structure of PHD domain in DNA-binding family protein AAM98074 分子名称: DNA-binding family protein, ZINC ION 著者 He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-25 公開日 2004-11-25 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of PHD domain in DNA-binding family protein AAM98074 To be Published

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