Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VN3
DownloadVisualize
BU of 3vn3 by Molmil
Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
分子名称: 1,2-ETHANEDIOL, Antifreeze protein
著者Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S.
登録日2011-12-21
公開日2012-06-06
最終更新日2013-07-17
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
5AXE
DownloadVisualize
BU of 5axe by Molmil
Crystal Structure Analysis of DNA Duplexes containing sulfoamide-bridged nucleic acid (SuNA-NH)
分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*(LSH)P*AP*CP*GP*C)-3')
著者Mitsuoka, Y, Aoyama, H, Kugimiya, A, Fujimura, Y, Yamamoto, T, Waki, R, Wada, F, Tahara, S, Sawamura, M, Noda, M, Hari, Y, Obika, S.
登録日2015-07-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Effect of an N-substituent in sulfonamide-bridged nucleic acid (SuNA) on hybridization ability and duplex structure.
Org.Biomol.Chem., 14, 2016
4GA2
DownloadVisualize
BU of 4ga2 by Molmil
Structure of the N-terminal domain of Nup358
分子名称: E3 SUMO-PROTEIN LIGASE RANBP2
著者Kassube, S.A, Lin, D.H, Stuwe, T, Hoelz, A.
登録日2012-07-24
公開日2012-09-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Crystal structure of the N-terminal domain of Nup358/RanBP2.
J.Mol.Biol., 423, 2012
5EWO
DownloadVisualize
BU of 5ewo by Molmil
Crystal structure of the human astrovirus 1 capsid protein spike domain at 0.95-A resolution
分子名称: SULFATE ION, Structural protein
著者Bogdanoff, W, York, R.L, Yousefi, P.A, Haile, S, Tripathi, S, DuBois, R.M.
登録日2015-11-20
公開日2015-12-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid.
J.Virol., 90, 2015
3LZ5
DownloadVisualize
BU of 3lz5 by Molmil
Human aldose reductase mutant T113V complexed with IDD594
分子名称: Aldose Reductase, CITRIC ACID, IDD594, ...
著者Koch, C, Heine, A, Klebe, G.
登録日2010-03-01
公開日2010-12-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Tracing the detail: how mutations affect binding modes and thermodynamic signatures of closely related aldose reductase inhibitors
J.Mol.Biol., 406, 2011
7SJJ
DownloadVisualize
BU of 7sjj by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF construct
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Weaver, J.B, Kirsh, J.M, Boxer, S.G.
登録日2021-10-17
公開日2022-05-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments.
J.Am.Chem.Soc., 144, 2022
6RQI
DownloadVisualize
BU of 6rqi by Molmil
Human Carbonic Anhydrase II in complex with fluorinated benzenesulfonamide
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 3-fluorobenzenesulfonamide, Carbonic anhydrase 2, ...
著者Gloeckner, S, Heine, A, Klebe, G.
登録日2019-05-15
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献The Influence of Varying Fluorination Patterns on the Thermodynamics and Kinetics of Benzenesulfonamide Binding to Human Carbonic Anhydrase II.
Biomolecules, 10, 2020
4UNU
DownloadVisualize
BU of 4unu by Molmil
MCG - a dimer of lambda variable domains
分子名称: IG LAMBDA CHAIN V-II REGION MGC, POLYETHYLENE GLYCOL (N=34), SULFATE ION
著者Brumshtein, B, Esswein, S.R, Landau, M, Ryan, C, Whitelegge, J, Casio, D, Sawaya, M.R, Eisenberg, D.S.
登録日2014-05-30
公開日2014-08-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Formation of Amyloid Fibers by Monomeric Light-Chain Variable Domains.
J.Biol.Chem., 289, 2014
7DC4
DownloadVisualize
BU of 7dc4 by Molmil
Crystal structure of glycan-bound Pseudomonas taiwanensis lectin
分子名称: Lectin, SULFATE ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose
著者Oda, K, Matoba, Y.
登録日2020-10-23
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Lectins engineered to favor a glycan-binding conformation have enhanced antiviral activity.
J.Biol.Chem., 296, 2021
352D
DownloadVisualize
BU of 352d by Molmil
THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION
分子名称: CALCIUM ION, DNA (5'-D(*TP*GP*GP*GP*GP*T)-3'), SODIUM ION
著者Phillips, K, Dauter, Z, Murchie, A.I.H, Lilley, D.M.J, Luisi, B.
登録日1997-09-04
公開日1997-11-10
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution.
J.Mol.Biol., 273, 1997
7A3H
DownloadVisualize
BU of 7a3h by Molmil
NATIVE ENDOGLUCANASE CEL5A CATALYTIC CORE DOMAIN AT 0.95 ANGSTROMS RESOLUTION
分子名称: ENDOGLUCANASE, ETHANOL, GLYCEROL
著者Davies, G.J, Varrot, A, Dauter, M, Brzozowski, A.M, Schulein, M, Mackenzie, L, Withers, S.G.
登録日1998-08-05
公開日1999-08-06
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Snapshots along an enzymatic reaction coordinate: analysis of a retaining beta-glycoside hydrolase.
Biochemistry, 37, 1998
3CNJ
DownloadVisualize
BU of 3cnj by Molmil
Cholesterol oxidase from Streptomyces sp. F359W mutant (0.95A)
分子名称: Cholesterol oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Lyubimov, A.Y, Brammer, L, Vrielink, A.
登録日2008-03-25
公開日2008-04-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献The binding and release of oxygen and hydrogen peroxide are directed by a hydrophobic tunnel in cholesterol oxidase
Biochemistry, 47, 2008
5M2H
DownloadVisualize
BU of 5m2h by Molmil
Crystal structure of vancomycin-Zn(II)-citrate complex
分子名称: CITRIC ACID, HEXAETHYLENE GLYCOL, Vancomycin, ...
著者Zarkan, A, Macklyne, H.-R, Chirgadze, D.Y, Bond, A.D, Hesketh, A.R, Hong, H.-J.
登録日2016-10-13
公開日2017-07-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Zn(II) mediates vancomycin polymerization and potentiates its antibiotic activity against resistant bacteria.
Sci Rep, 7, 2017
3ODV
DownloadVisualize
BU of 3odv by Molmil
X-ray structure of kaliotoxin by racemic protein crystallography
分子名称: CITRIC ACID, Potassium channel toxin alpha-KTx 3.1, trifluoroacetic acid
著者Pentelute, B.L, Mandal, K, Gates, Z.P, Sawaya, M.R, Yeates, T.O, Kent, S.B.H.
登録日2010-08-11
公開日2010-10-20
最終更新日2012-03-28
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography.
Chem.Commun.(Camb.), 46, 2010
6Y5S
DownloadVisualize
BU of 6y5s by Molmil
Crystal structure of savinase at cryogenic conditions
分子名称: CALCIUM ION, SODIUM ION, Subtilisin Savinase
著者Wu, S, Moroz, O, Turkenburg, J, Nielsen, J.E, Wilson, K.S, Teilum, K.
登録日2020-02-25
公開日2020-06-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis.
Peerj, 8, 2020
5II6
DownloadVisualize
BU of 5ii6 by Molmil
Crystal structure of the ZP-N1 domain of mouse sperm receptor ZP2 at 0.95 A resolution
分子名称: Zona pellucida sperm-binding protein 2
著者Dioguardi, E, Han, L, Nishimura, K, De Sanctis, D, Jovine, L.
登録日2016-03-01
公開日2017-06-14
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017
2IDU
DownloadVisualize
BU of 2idu by Molmil
Structure of M98Q mutant of amicyanin, Cu(I)
分子名称: Amicyanin, COPPER (I) ION
著者Carrell, C.J, Ma, J.K, Antholine, W, Hosler, J.P, Mathews, F.S, Davidson, V.L.
登録日2006-09-15
公開日2007-03-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Generation of Novel Copper Sites by Mutation of the Axial Ligand of Amicyanin. Atomic Resolution Structures and Spectroscopic Properties
Biochemistry, 46, 2007
6YIV
DownloadVisualize
BU of 6yiv by Molmil
Trypsin inhibitor in complex with bovine trypsin
分子名称: Cationic trypsin, DIMETHYL SULFOXIDE, SULFATE ION, ...
著者Badran, M.J, Heine, A, Klebe, G.
登録日2020-04-01
公開日2020-12-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Trypsin inhibitor in complex with bovine trypsin
To Be Published
2VHR
DownloadVisualize
BU of 2vhr by Molmil
Atomic resolution (0.95A) structure of purified thaumatin I grown in sodium L-tartrate at 4 C
分子名称: GLYCEROL, L(+)-TARTARIC ACID, THAUMATIN-1
著者Jakoncic, J, Asherie, N, Ginsberg, C.
登録日2007-11-24
公開日2009-02-10
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Tartrate Chirality Determines Thaumatin Crystal Habit
Cryst.Growth Des., 9, 2009
8CNF
DownloadVisualize
BU of 8cnf by Molmil
Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid)
分子名称: Aldo-keto reductase family 1 member B1, CITRIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Klee, L.-S, Heine, A, Klebe, G.
登録日2023-02-22
公開日2024-03-06
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Human Aldose Reductase Mutant L300G in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid)
To Be Published
6S9Z
DownloadVisualize
BU of 6s9z by Molmil
Expression tag modified N-terminus of human Carbonic Anhydrase II covalently linked to fragment
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 3-[3,4-bis(fluoranyl)phenyl]-5-methyl-1$l^{4},4,5$l^{4},7-tetrazabicyclo[4.3.0]nona-1(6),2,4-triene, Carbonic anhydrase 2, ...
著者Gloeckner, S, Heine, A, Klebe, G.
登録日2019-07-15
公開日2020-04-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献A Proof-of-Concept Fragment Screening of a Hit-Validated 96-Compounds Library against Human Carbonic Anhydrase II.
Biomolecules, 10, 2020
6SAY
DownloadVisualize
BU of 6say by Molmil
Human Carbonic Anhydrase II in complex with fragment.
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, (8~{a}~{S})-1,5,6,7,8,8~{a}-hexahydro-[1,3]oxazolo[3,4-a]pyrazin-3-one, Carbonic anhydrase 2, ...
著者Gloeckner, S, Heine, A, Klebe, G.
登録日2019-07-18
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献A Proof-of-Concept Fragment Screening of a Hit-Validated 96-Compounds Library against Human Carbonic Anhydrase II.
Biomolecules, 10, 2020
6SBH
DownloadVisualize
BU of 6sbh by Molmil
Human Carbonic Anhydrase II in complex with 4-pentylbenzenesulfonamide.
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 4-pentylbenzenesulfonamide, Carbonic anhydrase 2, ...
著者Gloeckner, S, Ngo, K, Heine, A, Klebe, G.
登録日2019-07-20
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Conformational Changes in Alkyl Chains Determine the Thermodynamic and Kinetic Binding Profiles of Carbonic Anhydrase Inhibitors.
Acs Chem.Biol., 15, 2020
6SBM
DownloadVisualize
BU of 6sbm by Molmil
Human Carbonic Anhydrase II in complex with 4-(pentyloxy)benzenesulfonamide
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 4-pentoxybenzenesulfonamide, CITRATE ANION, ...
著者Gloeckner, S, Ngo, K, Heine, A, Klebe, G.
登録日2019-07-21
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Human Carbonic Anhydrase II in complex with 4-(pentyloxy)benzenesulfonamide
To Be Published
6J64
DownloadVisualize
BU of 6j64 by Molmil
Crystal structure of human HINT1 mutant complexing with AP4A
分子名称: 2-AMINOETHANESULFONIC ACID, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Histidine triad nucleotide-binding protein 1
著者Wang, J, Fang, P, Guo, M.
登録日2019-01-14
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Second messenger Ap4A polymerizes target protein HINT1 to transduce signals in Fc epsilon RI-activated mast cells.
Nat Commun, 10, 2019

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon