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5J4P
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BU of 5j4p by Molmil
DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTTGG) in sodium
分子名称: DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*TP*GP*G)-3')
著者Dvorkin, S.A, Webba da Silva, M.
登録日2016-04-01
公開日2017-06-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
1NJG
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BU of 1njg by Molmil
Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit
分子名称: DNA polymerase III subunit gamma, SULFATE ION, ZINC ION
著者Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
登録日2002-12-30
公開日2003-04-01
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
4ROG
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BU of 4rog by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACACGTGGGAG)
分子名称: D(GGACACGTGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4ROK
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BU of 4rok by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACAGCTGGGAG)
分子名称: D(GGACAGCTGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RON
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BU of 4ron by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACCATGGGGAG)
分子名称: D(GGACCATGGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RP2
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BU of 4rp2 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGATAGCTAGGAG)
分子名称: D(GGATAGCTAGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-29
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4ROY
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BU of 4roy by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACGATCGGGAG)
分子名称: D(GGACGATCGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-29
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RP0
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BU of 4rp0 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGATAATTAGGAG)
分子名称: D(GGATAATTAGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-29
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4ROO
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BU of 4roo by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACCGCGGGGAG)
分子名称: D(GGACCGCGGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4ROZ
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BU of 4roz by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACGGCCGGGAG)
分子名称: D(GGACGGCCGGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-29
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
1CZD
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BU of 1czd by Molmil
CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4
分子名称: DNA POLYMERASE ACCESSORY PROTEIN G45
著者Moarefi, I, Jeruzalmi, D, Turner, J, O'Donnell, M, Kuriyan, J.
登録日1999-09-02
公開日2000-03-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage.
J.Mol.Biol., 296, 2000
5CHI
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BU of 5chi by Molmil
Crystal structure of PF2046 in complex with ssDNA
分子名称: DNA (5'-D(P*TP*TP*TP*T)-3'), MAGNESIUM ION, Uncharacterized protein
著者Kim, J.S, Hwang, K.Y, Lee, W.C.
登録日2015-07-10
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.472 Å)
主引用文献Structural basis of two-nucleotide removal of ssDNA by a cryptic RNase H fold 3'-5' exonuclease PF2046 from Pyrococcus furiosus
to be published
4RNK
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BU of 4rnk by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAATTTGGAG)
分子名称: GGAAAATTTGGAG, MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-24
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RO7
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BU of 4ro7 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAGCTTGGAG)
分子名称: D(GGAAAGCTTGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RO4
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BU of 4ro4 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAACGTTGGAG)
分子名称: D(GGAAACGTTGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-27
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RP1
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BU of 4rp1 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGATACGTAGGAG)
分子名称: D(GGATACGTAGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-29
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
4RO8
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BU of 4ro8 by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAATCGATGGAG)
分子名称: D(GGAATCGATGGAG), MAGNESIUM ION
著者Saoji, M.M, Paukstelis, P.J.
登録日2014-10-28
公開日2015-06-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
6WQ0
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BU of 6wq0 by Molmil
Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1
分子名称: DNA (301-MER), Structural protein
著者Wang, F, Baquero, D.P, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H.
登録日2020-04-28
公開日2020-07-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Proc.Natl.Acad.Sci.USA, 117, 2020
1B60
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BU of 1b60 by Molmil
3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE CYTIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS
分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
著者Cullinan, D, Johnson, F, De Los Santos, C.
登録日1999-01-20
公開日2000-02-18
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of an 11-mer duplex containing the 3, N(4)-ethenocytosine adduct opposite 2'-deoxycytidine: implications for the recognition of exocyclic lesions by DNA glycosylases.
J.Mol.Biol., 296, 2000
7EGT
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BU of 7egt by Molmil
The crystal structure of the C-terminal domain of T. thermophilus UvrD complexed with the N-terminal domain of UvrB
分子名称: DNA helicase UvrD, UvrABC system protein B
著者Zheng, F, Shen, L, Li, L, Zhang, Y.
登録日2021-03-26
公開日2022-04-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.581 Å)
主引用文献Crucial role and mechanism of transcription-coupled DNA repair in bacteria.
Nature, 604, 2022
5J4W
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BU of 5j4w by Molmil
DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTGG) in sodium
分子名称: DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*GP*G)-3')
著者Dvorkin, S.A, Webba da Silva, M.
登録日2016-04-01
公開日2017-04-12
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
5J6U
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BU of 5j6u by Molmil
DIY G-Quadruplexes: Solution Structure of d(GGGGTTTGGGGTTTTGGGGAAGGGG) in sodium
分子名称: DNA (25-MER)
著者Dvorkin, S.A, Karsisiotis, A.I, Webba da Silva, M.
登録日2016-04-05
公開日2017-05-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
4QKK
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BU of 4qkk by Molmil
Crystal structure of an oligonucleotide containing 5-formylcytosine
分子名称: DNA (5'-D(*CP*TP*AP*(5FC)P*GP*(5FC)P*GP*(5FC)P*GP*TP*AP*G)-3')
著者Raiber, E.-A, Murat, P, Chirgadze, D.Y, Luisi, B.F, Balasubramanian, S.
登録日2014-06-06
公開日2014-12-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献5-Formylcytosine alters the structure of the DNA double helix.
Nat.Struct.Mol.Biol., 22, 2015
2QEF
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BU of 2qef by Molmil
X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG
分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3')
著者Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
登録日2007-06-25
公開日2008-05-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
6JPI
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BU of 6jpi by Molmil
Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
分子名称: DNA (28-MER), HTH cro/C1-type domain-containing protein
著者Liu, Y, Gao, Z, Zhang, H, Dong, Y.
登録日2019-03-27
公開日2020-04-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.143 Å)
主引用文献Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
To Be Published

224572

件を2024-09-04に公開中

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