PDB: 238582 件ウェブページステータス検索Chemie searchBIRD

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5VEQ	MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2Y 分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... 著者 Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. 登録日 2017-04-05 公開日 2017-11-29 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
9G6T	p53-Y220C Core Domain Covalently Bound to 5-Chloro-6-methylpyrazine-2-carbonitrile Soaked at 5 mM 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-chloranyl-6-methyl-pyrazine-2-carbonitrile, ... 著者 Stahlecker, J, Klett, T, Stehle, T, Boeckler, F.M. 登録日 2024-07-19 公開日 2025-06-11 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 SNAr Reactive Pyrazine Derivatives as p53-Y220C Cleft Binders with Diverse Binding Modes Drug Des Devel Ther, 2025
6DSQ	Re-refinement of P. falciparum orotidine 5'-monophosphate decarboxylase 分子名称: Orotidine 5'-monophosphate decarboxylase 著者 Brandt, G.S, Novak, W.R.P. 登録日 2018-06-14 公開日 2018-10-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Re-refinement of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase provides a clearer picture of an important malarial drug target. Acta Crystallogr F Struct Biol Commun, 74, 2018
5VET	PHOSPHOLIPASE A2, RE-REFINEMENT OF THE PDB STRUCTURE 1JQ8 WITHOUT THE PUTATIVE COMPLEXED OLIGOPEPTIDE 分子名称: Phospholipase A2 VRV-PL-VIIIa 著者 Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. 登録日 2017-04-05 公開日 2018-06-20 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
6Q0N	Structure of the Erbin PDB domain in complex with a high-affinity peptide 分子名称: Erbin, peptide 著者 Singer, A.U, Teyra, J, Ernst, A, Sicheri, F, Sidhu, S.S. 登録日 2019-08-02 公開日 2019-11-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Comprehensive analysis of all evolutionary paths between two divergent PDZ domain specificities. Protein Sci., 29, 2020
6HIK	X-ray structure of TEAD4(Y429H) mutant) complexed with YAP (wildtype): Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy 分子名称: MYRISTIC ACID, PHOSPHATE ION, Transcriptional coactivator YAP1, ... 著者 Kallen, J. 登録日 2018-08-30 公開日 2019-04-03 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy. Febs J., 286, 2019
5VER	MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2Z 分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... 著者 Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. 登録日 2017-04-05 公開日 2017-11-29 最終更新日 2022-04-13 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
6DXQ	Crystal structure of the LigJ Hydratase product complex with 4-carboxy-4-hydroxy-2-oxoadipate 分子名称: (2S)-2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid, 4-oxalomesaconate hydratase, ZINC ION 著者 Mabanglo, M.F, Raushel, F.M. 登録日 2018-06-29 公開日 2018-09-26 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Structure and Reaction Mechanism of the LigJ Hydratase: An Enzyme Critical for the Bacterial Degradation of Lignin in the Protocatechuate 4,5-Cleavage Pathway. Biochemistry, 57, 2018
7UI4	Crystal structure of the DNA preQ0 insertase DpdA 分子名称: DNA-guanine transglycosylase, ZINC ION 著者 Hung, S.-H, Swairjo, M.A. 登録日 2022-03-28 公開日 2023-02-22 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system. Nucleic Acids Res., 51, 2023
6HX7	Crystal structure of human R180T variant of ORNITHINE AMINOTRANSFERASE at 1.8 Angstrom 分子名称: Ornithine aminotransferase, mitochondrial, PYRIDOXAL-5'-PHOSPHATE 著者 Giardina, G, Montioli, R, Cellini, B, Cutruzzola, F, Borri Voltattorni, C. 登録日 2018-10-16 公開日 2019-06-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 R180T variant of delta-ornithine aminotransferase associated with gyrate atrophy: biochemical, computational, X-ray and NMR studies provide insight into its catalytic features. Febs J., 286, 2019
8OT2	Structural and functional studies of geldanamycin amide synthase ShGdmF 分子名称: 1,2-ETHANEDIOL, 3-azanyl-5-methyl-phenol, ACETATE ION, ... 著者 Ewert, W, Zeilinger, C, Kirschning, A, Preller, M. 登録日 2023-04-20 公開日 2024-05-01 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Structural and functional studies of geldanamycin amide synthase ShGdmF To Be Published
7R7M	Crystal structure of Triosephosphate isomerase from Candidate division Katanobacteria (WWE3) bacterium 分子名称: PHOSPHATE ION, Triosephosphate isomerase 著者 Vickers, C.J, Patrick, W.M, Fraga, D. 登録日 2021-06-24 公開日 2022-07-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of WweTPI - Candidate division WWE3 To Be Published
5V0S	Crystal structure of the ACT domain of prephenate dehydrogenase tyrA from Bacillus anthracis 分子名称: CALCIUM ION, Prephenate dehydrogenase, SULFATE ION 著者 Shabalin, I.G, Hou, J, Cymborowski, M.T, Otwinowski, Z, Kwon, K, Christendat, D, Gritsunov, A, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2017-02-28 公開日 2017-03-08 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain. Febs J., 287, 2020
8U1E	Apo protein tyrosine phosphatase 1B (PTP1B) at high resolution (1.43 A) in space group P43212 with two distinctly ordered chains 分子名称: MAGNESIUM ION, Tyrosine-protein phosphatase non-receptor type 1 著者 Sharma, S, Mehlman, S.T, Keedy, D.A. 登録日 2023-08-31 公開日 2023-09-27 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 High-resolution double vision of the allosteric phosphatase PTP1B. Acta Crystallogr.,Sect.F, 80, 2024
3TPR	Crystal structure of BACE1 complexed with an inhibitor 分子名称: Beta-secretase 1, CHLORIDE ION, N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE 著者 Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L. 登録日 2011-09-08 公開日 2011-11-23 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations Acta Crystallogr.,Sect.D, 68, 2012
6DSR	Re-refinement of P. falciparum orotidine 5'-monophosphate decarboxylase 分子名称: Orotidine 5'-monophosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE 著者 Brandt, G.S, Novak, W.R.P. 登録日 2018-06-14 公開日 2018-10-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.597 Å) 主引用文献 Re-refinement of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase provides a clearer picture of an important malarial drug target. Acta Crystallogr F Struct Biol Commun, 74, 2018
9EOI	Crystal structure of the GH19 endolysin from Pseudomonas aeruginosa 分子名称: CITRATE ANION, Putative lytic enzyme 著者 Edvardsen, P.K.T, Englund, A.N.B, Rohr, A.K, Vaaje-Kolstad, G. 登録日 2024-03-14 公開日 2025-02-19 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Characterization of the lytic enzyme of Pseudomonas aeruginosa To Be Published
5VEP	MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB STRUCTURE 3E2F 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... 著者 Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. 登録日 2017-04-05 公開日 2017-11-29 最終更新日 2022-04-13 実験手法 X-RAY DIFFRACTION (2.59 Å) 主引用文献 Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
3TPP	Crystal structure of BACE1 complexed with an inhibitor 分子名称: Beta-secretase 1, CHLORIDE ION, N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE, ... 著者 Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L. 登録日 2011-09-08 公開日 2011-11-23 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations Acta Crystallogr.,Sect.D, 68, 2012
9G8K	Structure of K+-dependent Na+-PPase from Thermotoga maritima in complex with Ca2+ and Etidronate 分子名称: (1-hydroxyethane-1,1-diyl)bis(phosphonic acid), CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ... 著者 Vidilaseris, K, Liu, J, Goldman, A. 登録日 2024-07-23 公開日 2025-06-04 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Conformational dynamics and asymmetry in multimodal inhibition of membrane-bound pyrophosphatases Elife, 2024
5VEH	Re-refinement OF THE PDB STRUCTURE 1yiz of Aedes aegypti kynurenine aminotransferase 分子名称: BROMIDE ION, GLYCEROL, Kynurenine aminotransferase 著者 Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. 登録日 2017-04-04 公開日 2017-11-29 最終更新日 2022-04-13 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
8DTA	Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide. 分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ... 著者 Rosenbaum, J.C, Carlson, A.E. 登録日 2022-07-25 公開日 2023-07-05 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Glutathione modulates metal binding to proteins. TBD
6PRC	PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS (DG-420314 (TRIAZINE) COMPLEX) 分子名称: 15-cis-1,2-dihydroneurosporene, 2-CHLORO-4-ETHYLAMINO-6-(S(-)-2'-CYANO-4-BUTYLAMINO)-1,3,5-TRIAZINE, BACTERIOCHLOROPHYLL B, ... 著者 Lancaster, C.R.D, Michel, H. 登録日 1997-07-31 公開日 1999-04-06 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Refined crystal structures of reaction centres from Rhodopseudomonas viridis in complexes with the herbicide atrazine and two chiral atrazine derivatives also lead to a new model of the bound carotenoid. J.Mol.Biol., 286, 1999
1H22	Structure of acetylcholinesterase (E.C. 3.1.1.7) complexed with (S,S)-(-)-bis(10)-hupyridone at 2.15A resolution 分子名称: (S,S)-(-)-N,N'-DI-5'-[5',6',7',8'-TETRAHYDRO- 2'(1'H)-QUINOLYNYL]-1,10-DIAMINODECANE DIHYDROCHLORIDE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYLCHOLINESTERASE 著者 Wong, D.M, Greenblatt, H.M, Carlier, P.R, Han, Y.-F, Pang, Y.-P, Silman, I, Sussman, J.L. 登録日 2002-07-30 公開日 2002-12-23 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Acetylcholinesterase Complexed with Bivalent Ligands Related to Huperzine A: Experimental Evidence for Species-Dependent Protein-Ligand Complementarity J.Am.Chem.Soc., 125, 2003
5ZS9	SufS from Bacillus subtilis in the resting state 分子名称: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER 著者 Nakamura, R, Fujishiro, T, Takahashi, Y. 登録日 2018-04-28 公開日 2019-05-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020

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