PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1DPL	A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE 分子名称: 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3', MAGNESIUM ION, SPERMINE 著者 Egli, M, Tereshko, V, Teplova, M, Minasov, G, Joachimiak, A, Sanishvili, R, Weeks, C.M, Miller, R, Maier, M.A, An, H, Dan Cook, P, Manoharan, M. 登録日 1999-12-27 公開日 2000-04-04 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (0.83 Å) 主引用文献 X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution. Biopolymers, 48, 1998
396D	CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) 分子名称: DNA (5'-D(*GP*GP*CP*CP*GP*CP*GP*GP*CP*C)-3') 著者 Ban, C, Sundaralingam, M. 登録日 1998-04-29 公開日 1998-05-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal Structures of Two Isomophous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC) To be Published
2EFW	Crystal structure of the RTP:nRB complex from Bacillus subtilis 分子名称: DNA (5'-D(*DCP*DT*DAP*DTP*DGP*DTP*DAP*DCP*DCP*DAP*DAP*DAP*DTP*DGP*DTP*DTP*DCP*DAP*DGP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DCP*DTP*DGP*DAP*DAP*DCP*DAP*DTP*DTP*DTP*DGP*DGP*DTP*DAP*DCP*DAP*DTP*DAP*DG)-3'), Replication termination protein 著者 Vivian, J.P, Porter, C.J, Wilce, J.A, Wilce, M.C.J. 登録日 2007-02-26 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An asymmetric structure of the Bacillus subtilis replication terminator protein in complex with DNA J.Mol.Biol., 370, 2007
2JPD	Solution structure of the ERCC1 central domain 分子名称: DNA excision repair protein ERCC-1 著者 Tripsianes, K, Folkers, G, Zheng, C, Das, D, Grinstead, J.S, Kaptein, R, Boelens, R. 登録日 2007-05-06 公開日 2007-09-04 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Analysis of the XPA and ssDNA-binding surfaces on the central domain of human ERCC1 reveals evidence for subfunctionalization Nucleic Acids Res., 35, 2007
7E90	Crystal structure of the receiver domain (D51E) of the response regulator VbrR from Vibrio parahaemolyticus 分子名称: DNA-binding response regulator 著者 Cho, S.Y, Yoon, S.I. 登録日 2021-03-03 公開日 2021-04-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural analysis of the activation and DNA interactions of the response regulator VbrR from Vibrio parahaemolyticus. Biochem.Biophys.Res.Commun., 555, 2021
2OK0	Fab ED10-DNA complex 分子名称: 5'-D(*TP*C)-3', Fab ED10 heavy chain, Fab ED10 light chain 著者 Stanfield, R.L, Sanguineti, S, Wilson, I.A, de Prat-Gay, G. 登録日 2007-01-15 公開日 2007-06-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Specific recognition of a DNA immunogen by its elicited antibody J.Mol.Biol., 370, 2007
2D8M	Solution structure of the first BRCT domain of DNA-repair protein XRCC1 分子名称: DNA-repair protein XRCC1 著者 Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-12-06 公開日 2006-06-06 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the first BRCT domain of DNA-repair protein XRCC1 To be published
2HTT	Ruthenium Hexammine ion interactions with Z-DNA 分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(P*DTP*DG)-3'), ... 著者 Bharanidharan, D, Thiyagarajan, S, Gautham, N. 登録日 2006-07-26 公開日 2006-08-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Hexammineruthenium(III) ion interactions with Z-DNA Acta Crystallogr.,Sect.F, 63, 2007
395D	CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) 分子名称: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3') 著者 Ban, C, Sundaralingam, M. 登録日 1998-04-29 公開日 1998-05-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structures of Two Isomorphous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC) To be Published
2D95	LOW-TEMPERATURE STUDY OF THE A-DNA FRAGMENT D(GGGCGCCC) 分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') 著者 Eisenstein, M, Hope, H, Haran, T.E, Frolow, F, Shakked, Z, Rabinovich, D. 登録日 1993-07-13 公開日 1994-01-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Low-temperature study of the A-DNA fragment d(GGGCGCCC) ACTA CRYSTALLOGR.,SECT.B, 44, 1988
4FS1	Base pairing mechanism of N2,3-ethenoguanine with dTTP by human polymerase iota 分子名称: DNA 5'-D(*TP*CP*TP*(EFG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3', DNA polymerase iota, MAGNESIUM ION, ... 著者 Zhao, L. 登録日 2012-06-26 公開日 2012-08-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases. J.Biol.Chem., 287, 2012
6EL8	Crystal structure of the Forkhead domain of human FOXN1 in complex with DNA 分子名称: DNA (5'-D(*GP*GP*TP*GP*GP*CP*GP*TP*CP*TP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*AP*GP*AP*CP*GP*CP*CP*AP*CP*C)-3'), Forkhead box protein N1 著者 Newman, J.A, Aitkenhead, H.A, Pinkas, D.M, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O, Structural Genomics Consortium (SGC) 登録日 2017-09-28 公開日 2017-11-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Crystal structure of the Forkhead domain of human FOXN1 in complex with DNA To be published
2N89	Tetrameric i-motif structure of dT-dC-dC-CFL-CFL-dC at acidic pH 分子名称: DNA (5'-D(*TP*CP*CP*(CFL)P*(CFL)P*C)-3') 著者 Abou-Assi, H, Harkness, R.W, Martin-Pintado, N, Wilds, C.J, Campos-Olivas, R, Mittermaier, A.K, Gonzalez, C, Damha, M.J. 登録日 2015-10-09 公開日 2016-08-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Stabilization of i-motif structures by 2'-beta-fluorination of DNA. Nucleic Acids Res., 44, 2016
3RB9	Crystal structure of the M. tuberculosis beta clamp 分子名称: DNA polymerase III subunit beta 著者 Kukshal, V, Ramachandran, R. 登録日 2011-03-29 公開日 2012-04-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
1EM0	COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN 分子名称: DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3'), MAGNESIUM ION, TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL 著者 Neidle, S, Sanderson, M, Bennett, M, Krah, A, Wien, F, Garman, E, McKenna, R. 登録日 2000-03-14 公開日 2000-08-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (0.9 Å) 主引用文献 A DNA-porphyrin minor-groove complex at atomic resolution: the structural consequences of porphyrin ruffling. Proc.Natl.Acad.Sci.USA, 97, 2000
2HTO	Ruthenium hexammine ion interactions with Z-DNA 分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3'), RUTHENIUM (III) HEXAAMINE ION 著者 Bharanidharan, D, Thiyagarajan, S, Gautham, N. 登録日 2006-07-26 公開日 2006-08-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Hexammineruthenium(III) ion interactions with Z-DNA Acta Crystallogr.,Sect.F, 63, 2007
4S2Q	Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element 分子名称: DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP*CP*TP*G)-3'), DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP*CP*TP*G)-3'), Transcription factor SOX-9 著者 Vivekanandan, S, Moovarkumudalvan, B, Lescar, J, Kolatkar, P.R. 登録日 2015-01-21 公開日 2016-02-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element To be Published
2L13	mini-haipin of AT basepairs having a C12-alkyl linker forming the loop region 分子名称: DNA (5'-D(*TP*AP*TP*TP*AP*TP*((CH2)12)P*AP*TP*AP*AP*TP*A)-3') 著者 Siegmund, K.H, Hariharan, M, Lewis, F.D. 登録日 2010-07-22 公開日 2011-07-06 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Conformation of a dodecane DNA hairpin linker. Multiple gauche bonds cover the bases. J.Phys.Chem.B, 115, 2011
5HEK	crystal structure of M1.HpyAVI 分子名称: Adenine specific DNA methyltransferase (DpnA) 著者 Ma, B, Zhang, H, Liu, W. 登録日 2016-01-06 公開日 2016-11-16 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Biochemical and structural characterization of a DNA N6-adenine methyltransferase from Helicobacter pylori Oncotarget, 7, 2016
139D	SOLUTION STRUCTURE OF A PARALLEL-STRANDED G-QUADRUPLEX DNA 分子名称: DNA (5'-D(*TP*TP*GP*GP*GP*GP*T)-3') 著者 Patel, D.J, Wang, Y. 登録日 1993-09-28 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a parallel-stranded G-quadruplex DNA. J.Mol.Biol., 234, 1993
343D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*TP*AP*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-06-26 公開日 1997-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
3CNB	Crystal structure of signal receiver domain of DNA binding response regulator protein (merR) from Colwellia psychrerythraea 34H 分子名称: DNA-binding response regulator, merR family 著者 Patskovsky, Y, Romero, R, Freeman, J, Hu, S, Groshong, C, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2008-03-25 公開日 2008-04-08 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of signal receiver domain of DNA binding response regulator (merR) from Colwellia psychrerythraea 34H. To be Published
5Z67	Structure of the recombination mediator protein RecF in RecFOR pathway 分子名称: DNA replication and repair protein RecF 著者 Tang, Q, Liu, Y.-P, Yan, X.-X. 登録日 2018-01-22 公開日 2018-04-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair. Sci Rep, 8, 2018
7XFM	Structure of nucleosome-AAG complex (A-53I, post-catalytic state) 分子名称: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
7XFH	Structure of nucleosome-AAG complex (A-30I, post-catalytic state) 分子名称: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023

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