PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7TFY	[T:Ag+/Hg2+:T--(pH11-pH7; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 300s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.71 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
8J71	Selenomethionine mutant (L601Sem/L654Sem) of SAND domain of protein SP140 with DNA 分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), Nuclear body protein SP140 著者 Li, H.T, Liu, W.Q. 登録日 2023-04-26 公開日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Molecular basis for Speckled protein SP140 bivalent recognition of histone H3 and DNA To Be Published
7OXS	1.91 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex 分子名称: DNA (5'-D(*GP*TP*CP*TP*CP*CP*TP*AP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), SULFATE ION 著者 Dolot, R.M, Maciaszek, A, Nawrot, B.C. 登録日 2021-06-23 公開日 2021-07-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
1ECU	SOLUTION STRUCTURE OF E2F BINDING DNA FRAGMENT GCGCGAAAC-T-GTTTCGCGC 分子名称: DNA (5'-D(*GP*CP*GP*CP*GP*AP*AP*AP*CP*TP*GP*TP*TP*TP*CP*GP*CP*GP*C)-3') 著者 Wu, J.H, Chang, C, Pei, J.M, Xiao, Q, Shi, Y.Y. 登録日 2000-01-26 公開日 2000-02-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of E2F binding DNA fragment GCGCGAAAC-T-GTTTCGCGC studied by Molecular Dynamics Simulation and Two Dimensional NMR experiment to be published, 2000
8GH8	RuvA Holliday junction DNA complex 分子名称: DNA (34-MER), Holliday junction branch migration complex subunit RuvA 著者 Rish, A.D, Fu, T. 登録日 2023-03-09 公開日 2023-05-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 RuvA Holliday junction DNA complex To Be Published
7TG8	[T:Ag+/Hg2+:T--(pH11-pH7; 90s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 90s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5.46 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TG7	[T:Ag+/Hg2+:T--(pH11-pH7; 60s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 60s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.94 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TG6	[T:Ag+/Hg2+:T--(pH11-pH7; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 30s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.82 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TG9	[T:Ag+/Hg2+:T--(pH11-pH7; 300s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 300s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-01-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (4.69 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TGB	[T:Ag+/Hg2+:T--(pH8.5-pH11; 60s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 60s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-02-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5.36 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TGD	[T:Ag+/Hg2+:T--(pH8.5-pH11; 300s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 300s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-02-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5.25 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TGA	[T:Ag+/Hg2+:T--(pH8.5-pH11; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 30s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-02-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (6.61 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
7TGC	[T:Ag+/Hg2+:T--(pH8.5-pH11; 90s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 90s 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-01-07 公開日 2023-02-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (5.19 Å) 主引用文献 Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
6RNY	PFV intasome - nucleosome strand transfer complex 分子名称: DNA (108-MER), DNA (128-MER), DNA (33-MER), ... 著者 Pye, V.E, Renault, L, Maskell, D.P, Cherepanov, P, Costa, A. 登録日 2019-05-09 公開日 2019-09-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
2JYW	Solution structure of C-terminal domain of APOBEC3G 分子名称: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION 著者 Chen, K, Harjes, E, Gross, P.J, Fahmy, A, Lu, Y, Shindo, K, Harris, R.S, Matsuo, H. 登録日 2007-12-20 公開日 2008-02-26 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G. Nature, 452, 2008
6D1T	Complex of MBD1-MBD and methylated DNA 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3'), Methyl-CpG-binding domain protein 1, UNKNOWN ATOM OR ION 著者 Liu, K, Xu, C, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2018-04-12 公開日 2018-05-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Complex of MBD1-MBD and methylated DNA to be published
2D25	C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G 分子名称: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3'), MAGNESIUM ION 著者 Heinemann, U, Hahn, M. 登録日 1991-04-23 公開日 1991-04-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 C-C-A-G-G-C-m5C-T-G-G. Helical fine structure, hydration, and comparison with C-C-A-G-G-C-C-T-G-G. J.Biol.Chem., 267, 1992
4JCV	Crystal structure of the RecOR complex in an open conformation 分子名称: DNA repair protein RecO, Recombination protein RecR, ZINC ION 著者 Radzimanowski, J, McSweeney, S, Timmins, J. 登録日 2013-02-22 公開日 2013-08-07 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 An 'open' structure of the RecOR complex supports ssDNA binding within the core of the complex. Nucleic Acids Res., 41, 2013
4EUW	Crystal structure of a HMG domain of transcription factor SOX-9 bound to DNA (SOX-9/DNA) from Homo sapiens at 2.77 A resolution 分子名称: DNA (5'-D(*CP*TP*CP*TP*TP*TP*GP*AP*GP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*CP*AP*AP*AP*GP*AP*G)-3'), Transcription factor SOX-9 著者 Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL) 登録日 2012-04-25 公開日 2012-06-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Crystal structure of a HMG domain of transcription factor SOX-9 bound to DNA (SOX-9/DNA) from Homo sapiens at 2.77 A resolution To be published
1NI8	H-NS dimerization motif 分子名称: DNA-binding protein H-NS 著者 Bloch, V, Yang, Y, Margeat, E, Chavanieu, A, Aug, M.T, Robert, B, Arold, S, Rimsky, S, Kochoyan, M. 登録日 2002-12-22 公開日 2003-02-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The H-NS dimerisation domain defines a new fold contributing to DNA recognition Nat.Struct.Biol., 10, 2003
1EYU	HIGH RESOLUTION STRUCTURE OF THE PVUII ENDONCULEASE/COGNATE DNA COMPLEX AT PH 4.6 分子名称: DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3'), TYPE II RESTRICTION ENZYME PVUII 著者 Horton, J.R, Cheng, X. 登録日 2000-05-09 公開日 2000-07-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 PvuII endonuclease contains two calcium ions in active sites. J.Mol.Biol., 300, 2000
7AI7	MutS in Intermediate state 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*CP*TP*TP*AP*GP*CP*TP*TP*AP*GP*GP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*CP*CP*TP*AP*AP*CP*TP*AP*AP*G)-3'), ... 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
7AI5	MutS in Scanning state 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*AP*AP*TP*TP*CP*GP*CP*CP*CP*TP*AP*TP*AP*G)-3'), DNA (5'-D(P*CP*TP*AP*TP*AP*GP*GP*GP*CP*GP*AP*AP*TP*TP*GP*GP*GP*TP*AP*CP*CP*G)-3'), ... 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
7AI6	MutS in mismatch bound state 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (25-MER), DNA mismatch repair protein MutS 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (6.9 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
338D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-06-26 公開日 1997-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published

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