PDB: 593 件ウェブページステータス検索Chemie searchBIRD

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5XD1	Crystal structure of Mycobacterium smegmatis MutT1 in complex with Ap5A, ATP and magnesium 分子名称: ADENOSINE-5'-PENTAPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ... 著者 Arif, S.M, Varshney, U, Vijayan, M. 登録日 2017-03-24 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1 J. Struct. Biol., 199, 2017
5XD3	Crystal structure of Mycobacterium smegmatis MutT1 in complex with ATP (I) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... 著者 Arif, S.M, Varshney, U, Vijayan, M. 登録日 2017-03-24 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1 J. Struct. Biol., 199, 2017
5YGU	Crystal structure of Escherichia coli (strain K12) mRNA Decapping Complex RppH-DapF 分子名称: Diaminopimelate epimerase, IODIDE ION, L(+)-TARTARIC ACID, ... 著者 Wang, Q, Guan, Z.Y, Zhang, D.L, Zou, T.T, Yin, P. 登録日 2017-09-27 公開日 2018-06-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.298 Å) 主引用文献 DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli. Nucleic Acids Res., 46, 2018
5XD2	Crystal structure of Mycobacterium smegmatis MutT1 in complex with Ap5A, ATP and manganese 分子名称: ADENOSINE-5'-PENTAPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ... 著者 Arif, S.M, Varshney, U, Vijayan, M. 登録日 2017-03-24 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1 J. Struct. Biol., 199, 2017
5XD5	Crystal structure of Mycobacterium smegmatis MutT1 in complex with ATP, magnesium fluoride and phosphate 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, FLUORIDE ION, ... 著者 Arif, S.M, Varshney, U, Vijayan, M. 登録日 2017-03-24 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1 J. Struct. Biol., 199, 2017
5XD4	Crystal structure of Mycobacterium smegmatis MutT1 in complex with ATP (II) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... 著者 Arif, S.M, Varshney, U, Vijayan, M. 登録日 2017-03-24 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Hydrolysis of diadenosine polyphosphates. Exploration of an additional role of Mycobacterium smegmatis MutT1 J. Struct. Biol., 199, 2017
3CNG	Crystal structure of NUDIX hydrolase from Nitrosomonas europaea 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 Osipiuk, J, Xu, X, Zheng, H, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-03-25 公開日 2008-04-08 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray crystal structure of NUDIX hydrolase from Nitrosomonas europaea. To be Published
4HFQ	Crystal structure of UDP-X diphosphatase 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ... 著者 Duong-Ly, K.C, Amzel, L.M, Gabelli, S.B. 登録日 2012-10-05 公開日 2013-08-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 A UDP-X diphosphatase from Streptococcus pneumoniae hydrolyzes precursors of peptidoglycan biosynthesis. Plos One, 8, 2013
2A6T	Crystal structure of S.pombe mRNA decapping enzyme Dcp2p 分子名称: SPAC19A8.12 著者 She, M, Chen, N, Song, H. 登録日 2005-07-04 公開日 2005-12-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe Nat.Struct.Mol.Biol., 13, 2006
2QJO	crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase (NadM) complexed with ADPRP and NAD from Synechocystis sp. 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Bifunctional NMN adenylyltransferase/Nudix hydrolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Huang, N, Sorci, L, Zhang, X, Brautigan, C, Raffaelli, N, Magni, G, Grishin, N.V, Osterman, A, Zhang, H. 登録日 2007-07-08 公開日 2008-03-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism. Structure, 16, 2008
2QJT	Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis 分子名称: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, Nicotinamide-nucleotide adenylyltransferase 著者 Huang, N, Sorci, L, Zhang, X, Brautigan, C, Raffaelli, N, Magni, G, Grishin, N.V, Osterman, A, Zhang, H. 登録日 2007-07-09 公開日 2008-03-04 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism. Structure, 16, 2008
2QKM	The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, SPAC19A8.12 protein, SPBC3B9.21 protein 著者 She, M, Song, H. 登録日 2007-07-11 公開日 2008-04-15 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis of dcp2 recognition and activation by dcp1. Mol.Cell, 29, 2008
2R5W	Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis 分子名称: CHLORIDE ION, MAGNESIUM ION, Nicotinamide-nucleotide adenylyltransferase 著者 Huang, N, Sorci, L, Zhang, X, Brautigan, C, Li, X, Raffaelli, N, Grishin, N, Osterman, A, Zhang, H. 登録日 2007-09-04 公開日 2008-03-04 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism. Structure, 16, 2008
2FML	Crystal structure of MutT/nudix family protein from Enterococcus faecalis 分子名称: GLYCEROL, MutT/nudix family protein 著者 Chang, C, Quartey, P, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-01-09 公開日 2006-02-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal structure of MutT/nudix family protein from Enterococcus faecalis To be Published
2GB5	Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution 分子名称: NADH pyrophosphatase, ZINC ION 著者 Joint Center for Structural Genomics (JCSG) 登録日 2006-03-09 公開日 2006-03-28 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution To be published
5KQ1	Crystal structure of S. pombe Dcp1/Dcp2 in complex with H. sapiens PNRC2 分子名称: Proline-rich nuclear receptor coactivator 2, mRNA decapping complex subunit 2, mRNA-decapping enzyme subunit 1 著者 Mugridge, J.S, Ziemniak, M, Jemielity, J, Gross, J.D. 登録日 2016-07-05 公開日 2016-10-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.002 Å) 主引用文献 Structural basis of mRNA-cap recognition by Dcp1-Dcp2. Nat.Struct.Mol.Biol., 23, 2016
3FJY	Crystal structure of a probable MutT1 protein from Bifidobacterium adolescentis 分子名称: GLYCEROL, Probable MutT1 protein 著者 Palani, K, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2008-12-15 公開日 2009-01-13 最終更新日 2021-02-10 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of a probable MutT1 protein from Bifidobacterium adolescentis To be Published
6VCK	Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
6VCM	Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
6Y3Z	Crystal structure of the Pby1 ATP-grasp enzyme bound to the S. cerevisiae mRNA decapping complex (Dcp1-Dcp2-Edc3) 分子名称: Enhancer of mRNA-decapping protein 3, MAGNESIUM ION, Probable tubulin--tyrosine ligase PBY1, ... 著者 Graille, M. 登録日 2020-02-19 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.49 Å) 主引用文献 Pby1 is a direct partner of the Dcp2 decapping enzyme. Nucleic Acids Res., 48, 2020
6VCL	Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F- 分子名称: CHLORIDE ION, Diaminopimelate epimerase, FLUORIDE ION, ... 著者 Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A. 登録日 2019-12-21 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH. Nucleic Acids Res., 48, 2020
5N2V	Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme 分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Edc1, MAGNESIUM ION, ... 著者 Holdermann, I, Sprangers, R. 登録日 2017-02-08 公開日 2017-05-24 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5LON	Structure of /K. lactis/ Dcp1-Dcp2 decapping complex. 分子名称: KLLA0E01827p, KLLA0F23980p 著者 Charenton, C, Taverniti, V, Gaudon-Plesse, C, Back, R, Seraphin, B, Graille, M. 登録日 2016-08-09 公開日 2016-10-05 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structure of the active form of Dcp1-Dcp2 decapping enzyme bound to m(7)GDP and its Edc3 activator. Nat.Struct.Mol.Biol., 23, 2016
5LOP	Structure of the active form of /K. lactis/ Dcp1-Dcp2-Edc3 decapping complex bound to m7GDP 分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, KLLA0A11308p, KLLA0E01827p, ... 著者 Charenton, C, Taverniti, V, Gaudon-Plesse, C, Back, R, Seraphin, B, Graille, M. 登録日 2016-08-09 公開日 2016-10-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structure of the active form of Dcp1-Dcp2 decapping enzyme bound to m(7)GDP and its Edc3 activator. Nat.Struct.Mol.Biol., 23, 2016
3GZ5	Crystal structure of Shewanella oneidensis NrtR 分子名称: MutT/nudix family protein, SODIUM ION 著者 Huang, N, Zhang, H. 登録日 2009-04-06 公開日 2009-06-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism Structure, 17, 2009

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