PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5U6Z	Crystal Structure of Xenopus laevis Apex2 C-terminal Znf-GRF Domain 分子名称: DNA-(apurinic or apyrimidinic site) lyase, SULFATE ION, ZINC ION 著者 Wallace, B.D, Williams, R.S. 登録日 2016-12-09 公開日 2017-01-11 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 APE2 Zf-GRF facilitates 3'-5' resection of DNA damage following oxidative stress. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6B0Q	Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT 分子名称: DNA (5'-D(P*AP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*TP*T)-3'), SULFATE ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.794 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
2C7P	HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAH 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*G*GP*AP*TP*GP*(5CM*2PR)*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*CP*GP*CP*AP*TP*CP*C)-3', ... 著者 Neely, R.K, Daujotyte, D, Grazulis, S, Magennis, S.W, Dryden, D.T.F, Klimasauskas, S, Jones, A.C. 登録日 2005-11-25 公開日 2005-12-14 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes. Nucleic Acids Res., 33, 2005
8VMR	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 40s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
2Z43	Structure of a twinned crystal of RadA 分子名称: DNA repair and recombination protein radA 著者 Chen, L.T, Ko, T.P, Wang, A.H.J, Wang, T.F. 登録日 2007-06-12 公開日 2007-11-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structural and functional analyses of five conserved positively charged residues in the L1 and N-terminal DNA binding motifs of archaeal RADA protein Plos One, 2, 2007
4HCB	The metal-free form of crystal structure of E.coli ExoI-ssDNA complex 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ... 著者 Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. 登録日 2012-09-29 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
1CW9	DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE 分子名称: 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3', CALCIUM ION 著者 van Aalten, D.M.F, Erlanson, D.A, Verdine, G.L, Joshua-Tor, L. 登録日 1999-08-26 公開日 1999-10-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A structural snapshot of base-pair opening in DNA. Proc.Natl.Acad.Sci.USA, 96, 1999
1M3H	Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide 分子名称: 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ... 著者 Chung, S.J, Verdine, G.L. 登録日 2002-06-27 公開日 2004-04-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase Chem.Biol., 11, 2004
2J5O	Pseudomonas aeruginosa FtsK gamma domain 分子名称: DNA TRANSLOCASE FTSK 著者 Sivanathan, V, Allen, M.D, deBekker, C, Baker, R, Arciszewska, L, Freund, S.M, Bycroft, M, Lowe, J, Sherratt, D.J. 登録日 2006-09-19 公開日 2006-10-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Ftsk Gamma Domain Directs Oriented DNA Translocation by Interacting with Kops. Nat.Struct.Mol.Biol., 13, 2006
5X3H	The Y81G mutant of the UNG crystal structure from Nitratifractor salsuginis 分子名称: Uracil-DNA glycosylase 著者 Xie, W, Chen, R, Cao, W, Zhang, Z. 登録日 2017-02-06 公開日 2017-10-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis. FEBS J., 284, 2017
3GPU	MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Banerjee, A, Qi, Y, Verdine, G.L. 登録日 2009-03-23 公開日 2009-11-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
3GQ3	MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Banerjee, A, Qi, Y, Verdine, G.L. 登録日 2009-03-23 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
3GPX	Sequence-matched MutM Interrogation Complex 4 (IC4) 分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Spong, M.C, Qi, Y, Verdine, G.L. 登録日 2009-03-23 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
3GQ5	Sequence-matched MutM Interrogation Complex 5 (IC5) 分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... 著者 Qi, Y, Verdine, G.L. 登録日 2009-03-23 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
2J5P	E. coli FtsK gamma domain 分子名称: DNA TRANSLOCASE FTSK 著者 Sivanathan, V, Allen, M.D, de Bekker, C, Baker, R, Arciszewska, L, Freund, S.M, Bycroft, M, Lowe, J, Sherratt, D.J. 登録日 2006-09-19 公開日 2006-10-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Ftsk Gamma Domain Directs Oriented DNA Translocation by Interacting with Kops. Nat.Struct.Mol.Biol., 13, 2006
1NEQ	SOLUTION STRUCTURE OF THE MU NER PROTEIN BY MULTIDIMENSIONAL NMR 分子名称: DNA-BINDING PROTEIN NER 著者 Clore, G.M, Strzelecka, T.E, Gronenborn, A.M. 登録日 1995-08-24 公開日 1995-12-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the Mu Ner protein reveals a helix-turn-helix DNA recognition motif. Structure, 3, 1995
2P0J	Structure of restriction endonuclease BstYI bound to non-cognate DNA 分子名称: 5'-D(*AP*TP*GP*AP*AP*TP*CP*CP*AP*TP*A)-3', 5'-D(*TP*AP*TP*GP*GP*AP*TP*TP*CP*AP*T)-3', BstYI 著者 Townson, S.A, Samuelson, J.C, Bao, Y, Xu, S.Y, Aggarwal, A.K. 登録日 2007-02-28 公開日 2007-05-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 BstYI Bound to Noncognate DNA Reveals a "Hemispecific" Complex: Implications for DNA Scanning. Structure, 15, 2007
7U3O	[a2T7] Self-assembling asymmetric tensegrity triangle with P1 symmetry 分子名称: DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*CP*AP*CP*GP*AP*GP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*AP*AP*GP*A)-3'), DNA (5'-D(*GP*AP*GP*CP*GP*AP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.31 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
3BAM	RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX) 分子名称: DNA (5'-D(*TP*AP*TP*G)-3'), DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), DNA (5'-D(P*GP*AP*TP*CP*CP*AP*TP*A)-3'), ... 著者 Viadiu, H, Aggarwal, A.K. 登録日 1998-08-19 公開日 1999-01-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The role of metals in catalysis by the restriction endonuclease BamHI. Nat.Struct.Biol., 5, 1998
8W76	Crystal structure of d(CGTATACG)2 duplex 分子名称: DNA (5'-D(P*CP*GP*TP*AP*TP*AP*CP*G)-3'), MANGANESE (II) ION 著者 Satange, R.B, Peng, C.L, Hou, M.H. 登録日 2023-08-30 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Targeting DNA junction sites by bis-intercalators induces topological changes with potent antitumor effects. Nucleic Acids Res., 2024
5CB1	Apo enzyme of human Polymerase lambda 分子名称: DNA polymerase lambda 著者 Liu, M.S, Tsai, M.D. 登録日 2015-06-30 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
5X3G	The WT UNG crystal structure from Nitratifractor salsuginis 分子名称: Uracil-DNA glycosylase 著者 Xie, W, Cao, W, Chen, R, Zhang, Z. 登録日 2017-02-06 公開日 2017-10-18 最終更新日 2017-12-13 実験手法 X-RAY DIFFRACTION (2.021 Å) 主引用文献 An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis. FEBS J., 284, 2017
1NER	SOLUTION STRUCTURE OF THE MU NER PROTEIN BY MULTIDIMENSIONAL NMR 分子名称: DNA-BINDING PROTEIN NER 著者 Clore, G.M, Strzelecka, T.E, Gronenborn, A.M. 登録日 1995-08-24 公開日 1995-12-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the Mu Ner protein reveals a helix-turn-helix DNA recognition motif. Structure, 3, 1995
8H5Z	Crystal structure of RadD/ATP analogue complex 分子名称: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Putative DNA repair helicase RadD, ZINC ION 著者 Yan, X.X, Tian, L.F. 登録日 2022-10-14 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.00002718 Å) 主引用文献 Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci, 24, 2023
8H5Y	Crystal structure of RadD- ADP complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative DNA repair helicase RadD, ... 著者 Yan, X.X, Tian, L.F. 登録日 2022-10-14 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.7001 Å) 主引用文献 Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci, 24, 2023

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