PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

8W7W	Crystal structure of d(CGTATACG)2 with acridine complex 分子名称: DNA (5'-D(P*CP*GP*TP*AP*TP*AP*CP*G)-3'), MAGNESIUM ION, ~{N},~{N}'-di(acridin-9-yl)pentane-1,5-diamine 著者 Huang, S.C, Satange, R.B, Hou, M.H. 登録日 2023-08-31 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Targeting DNA junction sites by bis-intercalators induces topological changes with potent antitumor effects. Nucleic Acids Res., 2024
2NBJ	DNA-archeal MC1 protein complex structure by NMR 分子名称: Chromosomal protein MC1, DNA (5'-D(*AP*AP*AP*AP*AP*CP*AP*CP*AP*CP*AP*CP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*GP*TP*GP*TP*GP*TP*GP*TP*TP*TP*TP*T)-3') 著者 Paquet, F, Loth, K, Landon, C. 登録日 2016-02-25 公開日 2017-03-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 First 3D structure of an atypical protein-DNA complex To be Published
2R2R	d(ATTAGTTATAACTAAT) complexed with MMLV RT catalytic fragment 分子名称: DNA (5'-D(*DAP*DTP*DTP*DAP*DGP*DTP*DTP*DA)-3'), DNA (5'-D(P*DTP*DAP*DAP*DCP*DTP*DAP*DAP*DT)-3'), Reverse transcriptase 著者 Goodwin, K.D, Lewis, M.A, Long, E.C, Georgiadis, M.M. 登録日 2007-08-27 公開日 2008-07-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of DNA-bound Co(III) bleomycin B2: Insights on intercalation and minor groove binding. Proc.Natl.Acad.Sci.Usa, 105, 2008
3NZL	Crystal Structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4435B 分子名称: DNA-binding protein SATB1 著者 Forouhar, F, Abashidze, M, Seetharaman, J, Kuzin, A.P, Patel, P, Xiao, R, Ciccosanti, C, Shastry, R, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2010-07-16 公開日 2010-09-22 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (1.199 Å) 主引用文献 Crystal Structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens, Northeast Structural Genomics Consortium Target HR4435B (CASP Target) To be Published
3VWB	Crystal structure of VirB core domain (Se-Met derivative) complexed with the cis-acting site (5-BRU modifications) upstream icsb promoter 分子名称: DNA (26-MER), Virulence regulon transcriptional activator virB 著者 Gao, X.P, Waltersperger, S, Wang, M.T, Cui, S. 登録日 2012-08-21 公開日 2013-08-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.416 Å) 主引用文献 Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes Nucleic Acids Res., 41, 2013
6OZL	Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 2 min soak in Mn2+ 分子名称: DNA/RNA (5'-R(P*CP*GP*GP*UP*AP*AP*CP*CP*C)-D(P*I)-R(P*AP*UP*AP*UP*GP*CP*AP*UP*GP*CP*AP*UP*U)-3'), Endonuclease V, GLYCEROL, ... 著者 Samara, N.L, Yang, W. 登録日 2019-05-15 公開日 2019-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
7KU4	DNA-DB818 complex: The DNA sequence 5'-CGCGAATTCGCG-3' presents a binding site for the heterocyclic small molecule (DB818). 分子名称: 1:(5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE, MAGNESIUM ION 著者 Ogbonna, E, Fang, Z, Wilson, W.D. 登録日 2020-11-24 公開日 2021-12-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Drug design and DNA structural research inspired by the Neidle laboratory: DNA minor groove binding and transcription factor inhibition by thiophene diamidines. Bioorg.Med.Chem., 68, 2022
7BNA	ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Holbrook, S.R, Dickerson, R.E, Kim, S.-H. 登録日 1985-01-07 公開日 1985-07-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer CGCGAATTCGCG by the Segmented Rigid-Body Method Acta Crystallogr.,Sect.B, 41, 1985
7BSG	Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5G mutant) 分子名称: DNA (5'-D(*CP*AP*CP*CP*GP*AP*GP*CP*GP*A)-3'), SILVER ION 著者 Kondo, J, Cerretani, C, Vosch, T. 登録日 2020-03-30 公開日 2020-12-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster. CrystEngComm, 22, 2020
7BSH	Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (Abasic mutant) 分子名称: DNA (5'-D(*CP*AP*CP*CP*(3DR)P*AP*GP*CP*GP*A)-3'), SILVER ION 著者 Kondo, J, Cerretani, C, Vosch, T. 登録日 2020-03-30 公開日 2020-12-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster. CrystEngComm, 22, 2020
3ZOQ	Structure of BsUDG-p56 complex 分子名称: CHLORIDE ION, GLYCEROL, P56, ... 著者 Banos-Sanz, J.I, Mojardin, L, Sanz-Aparicio, J, Gonzalez, B, Salas, M. 登録日 2013-02-22 公開日 2013-05-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal Structure and Functional Insights Into Uracil-DNA Glycosylase Inhibition by Phage Phi29 DNA Mimic Protein P56 Nucleic Acids Res., 41, 2013
5W7N	2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant 分子名称: DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... 著者 Fang, Z, Yang, F, Huang, Z. 登録日 2017-06-20 公開日 2017-06-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 2-Se-T2/4-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
8IEW	Cas005-crRNA-DNA complex 分子名称: Cas005, DNA (55-MER), RNA (38-MER) 著者 Zhang, X, Duan, Z.Q, Zhu, J.K. 登録日 2023-02-16 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM structure of Cas005-crRNA-DNA complex at 3.1 Angstroms resolution To Be Published
5UJ1	Crystal structure of Mycobacterium tuberculosis Topoisomerase I at 2.15A resolution limit 分子名称: DNA topoisomerase 1, SULFATE ION 著者 Cao, N, Tan, K, Tse-Dinh, Y.C. 登録日 2017-01-16 公開日 2018-01-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.153 Å) 主引用文献 Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site. Nucleic Acids Res., 46, 2018
7CSY	Pseudomonas aeruginosa antitoxin HigA with higBA promoter 分子名称: DNA (28-MER), DNA (29-MER), HTH cro/C1-type domain-containing protein, ... 著者 Song, Y.J, Luo, G.H, Bao, R. 登録日 2020-08-17 公開日 2021-01-13 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs. Environ.Microbiol., 23, 2021
5UJY	The structure of Mycobacterium tuberculosis topoisomerase I from the 2nd crystal form 分子名称: DNA topoisomerase 1 著者 Cao, N, Tan, K, Tse-Dinh, Y.C. 登録日 2017-01-19 公開日 2018-01-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site. Nucleic Acids Res., 46, 2018
3W2A	Crystal structure of VirB core domain complexed with the cis-acting site upstream icsp promoter 分子名称: DNA (31-mer), Virulence regulon transcriptional activator VirB 著者 Gao, X.P, Waltersperger, S, Wang, M.T, Cui, S. 登録日 2012-11-27 公開日 2013-09-04 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.775 Å) 主引用文献 Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes Nucleic Acids Res., 41, 2013
3IRQ	Crystal structure of a Z-Z junction 分子名称: DNA (5'-D(*AP*CP*CP*GP*CP*GP*CP*GP*AP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*TP*CP*GP*CP*GP*CP*G)-3'), Double-stranded RNA-specific adenosine deaminase 著者 Athanasiadis, A, de Rosa, M. 登録日 2009-08-24 公開日 2010-05-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of a junction between two Z-DNA helices. Proc.Natl.Acad.Sci.USA, 107, 2010
5YJ3	Crystal structure of TZAP and telomeric DNA complex 分子名称: DNA (5'-D(*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), Telomere zinc finger-associated protein, ... 著者 Li, F, Zhao, Y. 登録日 2017-10-07 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.845 Å) 主引用文献 The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA. Cell Res., 28, 2018
2C7O	HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH 分子名称: 5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3', MODIFICATION METHYLASE HHAI, ... 著者 Daujotyte, D, Grazulis, S. 登録日 2005-11-25 公開日 2005-12-14 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes. Nucleic Acids Res., 33, 2005
2C7R	HhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAH 分子名称: 5'-D(*G*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*(2PR)*GP*CP*AP*TP*CP*C)-3', GLYCEROL, ... 著者 Daujotyte, D, Grazulis, S. 登録日 2005-11-27 公開日 2005-12-14 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes. Nucleic Acids Res., 33, 2005
2VTB	Structure of cryptochrome 3 - DNA complex 分子名称: 5'-D(*DT*DT*DT*DT*DTP)-3', 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, ACETATE ION, ... 著者 Pokorny, R, Klar, T, Hennecke, U, Carell, T, Batschauer, A, Essen, L.-O. 登録日 2008-05-13 公開日 2009-06-02 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Recognition and Repair of Uv Lesions in Loop Structures of Duplex DNA by Dash-Type Cryptochrome. Proc.Natl.Acad.Sci.USA, 105, 2008
4HCC	The zinc ion bound form of crystal structure of E.coli ExoI-ssDNA complex 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, ISOPROPYL ALCOHOL, ... 著者 Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. 登録日 2012-09-29 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
6XTW	HumRadA33F in complex with peptidic inhibitor 6 分子名称: DNA repair and recombination protein RadA, SULFATE ION, ~{N}-[2-[(2~{S})-2-[[(1~{S})-1-(4-methoxyphenyl)ethyl]carbamoyl]pyrrolidin-1-yl]-2-oxidanylidene-ethyl]quinoline-2-carboxamide 著者 Fischer, G, Marsh, M.E, Scott, D.E, Coyne, A.G, Skidmore, J, Abell, C, Hyvonen, M. 登録日 2020-01-16 公開日 2021-01-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death. Cell Chem Biol, 28, 2021
2C7Q	HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH 分子名称: 5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3', CITRIC ACID, ... 著者 Daujotyte, D, Grazulis, S. 登録日 2005-11-27 公開日 2005-12-14 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes Nucleic Acids Res., 33, 2005

<221222223224225226227228229230231232233234235236>