Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7Z8B
DownloadVisualize
BU of 7z8b by Molmil
Structure of CRL7FBXW8 reveals coupling with CUL1-RBX1/ROC1 for multi-cullin-RING E3-catalyzed ubiquitin ligation
分子名称: Cullin-7, E3 ubiquitin-protein ligase RBX1, F-box/WD repeat-containing protein 8, ...
著者Hopf, L.V.M, Schulman, B.A.
登録日2022-03-17
公開日2022-08-24
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of CRL7 FBXW8 reveals coupling with CUL1-RBX1/ROC1 for multi-cullin-RING E3-catalyzed ubiquitin ligation.
Nat.Struct.Mol.Biol., 29, 2022
7Z7H
DownloadVisualize
BU of 7z7h by Molmil
Structure of P. luminescens TccC3-F-actin complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5-DIPHOSPHORIBOSE, Actin, ...
著者Belyy, A, Raunser, S.
登録日2022-03-15
公開日2022-06-29
最終更新日2023-03-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.
Nat Commun, 13, 2022
7ZDU
DownloadVisualize
BU of 7zdu by Molmil
Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC)/ATP(CydD) bound state (Dataset-19)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZIX
DownloadVisualize
BU of 7zix by Molmil
X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a butylmethanesulfonamide tetramethylrhodamine ligand (TMR-S4)
分子名称: Haloalkane dehalogenase, [9-[2-carboxy-5-[2-[2-[4-(methylsulfonylamino)butoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium
著者Tarnawski, M, Kompa, J, Johnsson, K, Hiblot, J.
登録日2022-04-08
公開日2023-04-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a butylmethanesulfonamide tetramethylrhodamine ligand (HSAm(4)-TMR)
To Be Published
7ZDC
DownloadVisualize
BU of 7zdc by Molmil
IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
4PO5
DownloadVisualize
BU of 4po5 by Molmil
Crystal structure of allophycocyanin B from Synechocystis PCC 6803
分子名称: Allophycocyanin beta chain, Allophycocyanin subunit alpha-B, PHYCOCYANOBILIN, ...
著者Pang, P.P, Dong, L.L, Sun, Y.F, Zeng, X.L, Ding, W.L, Scheer, H, Yang, X, Zhao, K.H.
登録日2014-02-24
公開日2014-10-29
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.751 Å)
主引用文献The structure of allophycocyanin B from Synechocystis PCC 6803 reveals the structural basis for the extreme redshift of the terminal emitter in phycobilisomes.
Acta Crystallogr.,Sect.D, 70, 2014
7ZD5
DownloadVisualize
BU of 7zd5 by Molmil
IF(apo/as isolated) conformation of CydDC (Dataset-1)
分子名称: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
著者Wu, D, Safarian, S.
登録日2022-03-29
公開日2023-04-19
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZS0
DownloadVisualize
BU of 7zs0 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis
分子名称: CALCIUM ION, GLYCEROL, HEME C, ...
著者Akram, M, Barends, T.
登録日2022-05-05
公開日2023-05-17
最終更新日2025-01-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7ZS1
DownloadVisualize
BU of 7zs1 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis, M292C mutant
分子名称: CALCIUM ION, GLYCEROL, HEME C, ...
著者Akram, M, Barends, T.
登録日2022-05-05
公開日2023-05-17
最終更新日2025-01-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7ZS2
DownloadVisualize
BU of 7zs2 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis, M292H mutant
分子名称: CALCIUM ION, HEME C, Hypothetical (Diheme) protein, ...
著者Akram, M, Barends, T.
登録日2022-05-05
公開日2023-05-17
最終更新日2025-01-22
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7QKR
DownloadVisualize
BU of 7qkr by Molmil
Cryo-EM structure of ABC transporter STE6-2p from Pichia pastoris with Verapamil at 3.2 A resolution
分子名称: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, Dexverapamil, MAGNESIUM ION, ...
著者Schleker, E.S.M, Reinhart, C.
登録日2021-12-18
公開日2022-10-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural and functional investigation of ABC transporter STE6-2p from Pichia pastoris reveals unexpected interaction with sterol molecules.
Proc.Natl.Acad.Sci.USA, 119, 2022
8AW5
DownloadVisualize
BU of 8aw5 by Molmil
Cryo-EM structure of heme A synthase trimer from Aquifex aeolicus
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Heme O oxygenase, PROTOPORPHYRIN IX CONTAINING FE
著者Hui, Z, Guoliang, Z.
登録日2022-08-29
公開日2023-09-06
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structure of heme A synthase trimer from Aquifex aeolicus
To Be Published
8B4I
DownloadVisualize
BU of 8b4i by Molmil
Cryo-EM structure of the Neurospora crassa TOM core complex at 3.3 angstrom
分子名称: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, DIUNDECYL PHOSPHATIDYL CHOLINE, Mitochondrial import receptor subunit Tom22, ...
著者Ornelas, P, Kuehlbrandt, W.
登録日2022-09-20
公開日2023-08-09
最終更新日2023-08-30
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Two conformations of the Tom20 preprotein receptor in the TOM holo complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
7ZJV
DownloadVisualize
BU of 7zjv by Molmil
Structure of human USPL1 in covalent complex with DeltaN-SUMO2/3-PA probe
分子名称: CHLORIDE ION, SUMO-specific isopeptidase USPL1, Small ubiquitin-related modifier 2, ...
著者Zhao, Z, Gersch, M.
登録日2022-04-12
公開日2023-09-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases.
J.Am.Chem.Soc., 145, 2023
7ZJU
DownloadVisualize
BU of 7zju by Molmil
Structure of human USPL1 in covalent complex with SUMO3-2Br probe
分子名称: 2-bromanylethanamine, CALCIUM ION, CHLORIDE ION, ...
著者Zhao, Z, Gersch, M.
登録日2022-04-12
公開日2023-09-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases.
J.Am.Chem.Soc., 145, 2023
7ZOX
DownloadVisualize
BU of 7zox by Molmil
Nup93 in complex with xhNup93-Nb4i and xNup93-Nb2t
分子名称: Nuclear pore complex protein Nup93, xNup93-Nb2t, xhNup93-Nb4i
著者Fu, Z, Guttler, T, Colom, M.S.
登録日2022-04-26
公開日2023-11-08
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献A checkpoint function for Nup98 in nuclear pore formation suggested by novel inhibitory nanobodies.
Embo J., 2024
8AN1
DownloadVisualize
BU of 8an1 by Molmil
Structure of a first level Sierpinski triangle formed by a citrate synthase
分子名称: Citrate synthase
著者Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
登録日2022-08-04
公開日2024-02-21
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.93 Å)
主引用文献Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
8A9E
DownloadVisualize
BU of 8a9e by Molmil
Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
分子名称: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, GADOLINIUM ATOM, Lysozyme
著者Barends, T, Nass, K, Gorel, A, Schlichting, I.
登録日2022-06-28
公開日2023-07-12
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.665 Å)
主引用文献Microcrystallization methods
To Be Published
8CUY
DownloadVisualize
BU of 8cuy by Molmil
ACP1-KS-AT domains of mycobacterial Pks13
分子名称: 4'-PHOSPHOPANTETHEINE, Polyketide synthase PKS13, UNKNOWN LIGAND
著者Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
登録日2022-05-17
公開日2023-02-15
最終更新日2023-03-29
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8CV0
DownloadVisualize
BU of 8cv0 by Molmil
KS-AT domains of mycobacterial Pks13 with outward AT conformation
分子名称: Polyketide synthase PKS13, UNKNOWN LIGAND
著者Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
登録日2022-05-17
公開日2023-02-15
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8CUZ
DownloadVisualize
BU of 8cuz by Molmil
KS-AT domains of mycobacterial Pks13 with inward AT conformation
分子名称: Polyketide synthase PKS13, UNKNOWN LIGAND
著者Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
登録日2022-05-17
公開日2023-02-15
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8A3O
DownloadVisualize
BU of 8a3o by Molmil
Structure of human Fy-4
分子名称: Quinone oxidoreductase-like protein 1
著者Schuhmacher, J.S, Zerial, M.
登録日2022-06-08
公開日2022-06-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023
8CV1
DownloadVisualize
BU of 8cv1 by Molmil
ACP1-KS-AT domains of mycobacterial Pks13
分子名称: Polyketide synthase PKS13, UNKNOWN LIGAND
著者Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
登録日2022-05-17
公開日2023-02-15
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8A3P
DownloadVisualize
BU of 8a3p by Molmil
Structure of human Fy-5.
分子名称: Glutamine amidotransferase-like class 1 domain-containing protein 1
著者Schuhmacher, J.S, Zerial, M.
登録日2022-06-08
公開日2022-06-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023
7QP6
DownloadVisualize
BU of 7qp6 by Molmil
Structure of the human 48S initiation complex in open state (h48S AUG open)
分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
著者Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N.
登録日2022-01-03
公開日2022-05-11
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.
Nucleic Acids Res., 50, 2022

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon