PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6CQ2	Crystal structure of Mycobacterium tuberculosis Topoisomerase I in complex with oligonucleotide MTS2-12 and Magnesium 分子名称: DNA (5'-D(P*TP*TP*CP*CP*GP*CP*TP*TP*GP*A)-3'), DNA topoisomerase 1, MAGNESIUM ION, ... 著者 Cao, N, Thirunavukkaraus, A, Tan, K, Tse-Dinh, Y.-C. 登録日 2018-03-14 公開日 2018-05-30 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.004 Å) 主引用文献 Investigating mycobacterial topoisomerase I mechanism from the analysis of metal and DNA substrate interactions at the active site. Nucleic Acids Res., 46, 2018
6DRT	Crystal structure of the processivity clamp GP45 complexed with recognition peptide of ligase from bacteriophage T4 分子名称: 1,2-ETHANEDIOL, DNA polymerase clamp, GP45 recognition loop 著者 Shi, K, Aihara, H. 登録日 2018-06-13 公開日 2018-09-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.117 Å) 主引用文献 T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction. Nucleic Acids Res., 46, 2018
5GQ9	Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target 分子名称: DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3'), MAGNESIUM ION, ... 著者 Zhao, H, Sheng, G, Wang, Y. 登録日 2016-08-06 公開日 2017-08-09 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target To Be Published
2R7Y	Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N 分子名称: DNA (5'-D(*DAP*DTP*(SDG)P*DTP*DCP*(SDG))-3'), MAGNESIUM ION, PHOSPHATE ION, ... 著者 Jiang, J.-S, Gerlits, O, Huang, Z. 登録日 2007-09-10 公開日 2008-05-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N To be Published
4POG	MCM-ssDNA co-crystal structure 分子名称: 30-mer oligo(dT), Cell division control protein 21, ZINC ION 著者 Froelich, C.A, Kang, S, Epling, L.B, Bell, S.P, Enemark, E.J. 登録日 2014-02-25 公開日 2014-04-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.203 Å) 主引用文献 A conserved MCM single-stranded DNA binding element is essential for replication initiation. Elife, 3, 2014
1F5E	STRUCTURE OF TRANSCRIPTIONAL FACTOR ALCR IN COMPLEX WITH A TARGET DNA 分子名称: DNA (5'-D(P*CP*GP*TP*GP*CP*GP*GP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*CP*CP*GP*CP*AP*CP*G)-3'), ETHANOL REGULON TRANSCRIPTIONAL FACTOR, ... 著者 Cahuzac, B, Cerdan, R, Felenbok, B, Guittet, E. 登録日 2000-06-14 公開日 2001-09-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of an AlcR-DNA complex sheds light onto the unique tight and monomeric DNA binding of a Zn(2)Cys(6) protein. Structure, 9, 2001
5CB1	Apo enzyme of human Polymerase lambda 分子名称: DNA polymerase lambda 著者 Liu, M.S, Tsai, M.D. 登録日 2015-06-30 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
6B1S	Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*AP*(CGY)P*(CGY)P*TP*TP*TP*AP*TP*AP*AP*G)-3'), Reverse transcriptase 著者 Singh, I, Georgiadis, M.M. 登録日 2017-09-18 公開日 2018-09-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 "Skinny" and "Fat" DNA: Two New Double Helices. J. Am. Chem. Soc., 140, 2018
2QSJ	Crystal structure of a LuxR family DNA-binding response regulator from Silicibacter pomeroyi 分子名称: DNA-binding response regulator, LuxR family 著者 Bonanno, J.B, Freeman, J, Bain, K.T, Mendoza, M, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2007-07-31 公開日 2007-08-14 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of a LuxR family DNA-binding response regulator from Silicibacter pomeroyi. To be Published
5N8O	Cryo EM structure of the conjugative relaxase TraI of the F/R1 plasmid system 分子名称: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA helicase I 著者 Ilangovan, A, Zanetti, G, Waksman, G. 登録日 2017-02-23 公開日 2017-05-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation Cell, 169, 2017
8VMV	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 600s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN7	Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 20s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNL	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 240s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN3	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 600s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNB	Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 240s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNN	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 480s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNT	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 1800s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN4	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 1200s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNC	Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VND	Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 600s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNO	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 600s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNS	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 200 mM Mn2+ for 600s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8W7W	Crystal structure of d(CGTATACG)2 with acridine complex 分子名称: DNA (5'-D(P*CP*GP*TP*AP*TP*AP*CP*G)-3'), MAGNESIUM ION, ~{N},~{N}'-di(acridin-9-yl)pentane-1,5-diamine 著者 Huang, S.C, Satange, R.B, Hou, M.H. 登録日 2023-08-31 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Targeting DNA junction sites by bis-intercalators induces topological changes with potent antitumor effects. Nucleic Acids Res., 2024
5YJ3	Crystal structure of TZAP and telomeric DNA complex 分子名称: DNA (5'-D(*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), Telomere zinc finger-associated protein, ... 著者 Li, F, Zhao, Y. 登録日 2017-10-07 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.845 Å) 主引用文献 The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA. Cell Res., 28, 2018
7JSH	Adeno-Associated Virus 2 Rep68 HD Heptamer-ssAAVS1 with ATPgS 分子名称: DNA (5'-D(P*CP*GP*CP*TP*CP*GP*CP*TP*CP*GP*CP*TP*CP*GP*C)-3'), Protein Rep68 著者 Escalante, C.R. 登録日 2020-08-14 公開日 2020-12-09 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA+ machine that can switch between oligomeric states. Nucleic Acids Res., 48, 2020

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