Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GMR
DownloadVisualize
BU of 9gmr by Molmil
SIRT7-H3K36MTUnucleosome complex
分子名称: DNA (149-MER), Histone H2A type 2-A, Histone H2B type 1-J, ...
著者Moreno-Yruela, C, Ekundayo, B, Foteva, P, Calvino-Sanles, E, Ni, D, Stahlberg, H, Fierz, B.
登録日2024-08-29
公開日2025-01-29
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis of SIRT7 nucleosome engagement and substrate specificity.
Nat Commun, 16, 2025
8Y3F
DownloadVisualize
BU of 8y3f by Molmil
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H.
登録日2024-01-29
公開日2025-01-29
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (4.54 Å)
主引用文献Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering.
Pnas Nexus, 3, 2024
8Y3D
DownloadVisualize
BU of 8y3d by Molmil
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H.
登録日2024-01-29
公開日2025-01-29
最終更新日2025-06-18
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering.
Pnas Nexus, 3, 2024
8Y3C
DownloadVisualize
BU of 8y3c by Molmil
Cryo-EM structure of the overlapping di-nucleosome (closed form)
分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H.
登録日2024-01-29
公開日2025-01-29
実験手法ELECTRON MICROSCOPY (5.21 Å)
主引用文献Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering.
Pnas Nexus, 3, 2024
8Y3E
DownloadVisualize
BU of 8y3e by Molmil
Cryo-EM structure of the overlapping di-nucleosome (open form)
分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H.
登録日2024-01-29
公開日2025-01-29
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (5.32 Å)
主引用文献Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering.
Pnas Nexus, 3, 2024
7X3X
DownloadVisualize
BU of 7x3x by Molmil
Cryo-EM structure of N1 nucleosome-RA
分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
著者Lifei, L, Kangjing, C, Chen, Z.
登録日2022-03-01
公開日2023-09-20
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
4WLU
DownloadVisualize
BU of 4wlu by Molmil
Crystal structure of L-malate and NAD bound MDH2
分子名称: (2S)-2-hydroxybutanedioic acid, Malate dehydrogenase, mitochondrial, ...
著者Eo, Y.M, Han, B.G, Ahn, H.C.
登録日2014-10-08
公開日2015-11-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Crystal structure of L-malate and NAD bound MDH2
To Be Published
4WLO
DownloadVisualize
BU of 4wlo by Molmil
Crystal structure of oxaloacetate and NADH bound MDH2
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Malate dehydrogenase, mitochondrial, ...
著者Eo, Y.M, Han, B.G, Ahn, H.C.
登録日2014-10-07
公開日2015-11-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of oxaloacetate and NADH bound MDH2
To Be Published
4WLE
DownloadVisualize
BU of 4wle by Molmil
Crystal structure of citrate bound MDH2
分子名称: CITRIC ACID, Malate dehydrogenase, mitochondrial
著者Eo, Y.M, Han, B.G, Ahn, H.C.
登録日2014-10-07
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of citrate bound MDH2
To Be Published
4WLV
DownloadVisualize
BU of 4wlv by Molmil
Crystal structure of NAD bound MDH2
分子名称: Malate dehydrogenase, mitochondrial, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Eo, Y.M, Han, B.G, Ahn, H.C.
登録日2014-10-08
公開日2015-11-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of NAD bound MDH2
To Be Published
4WLN
DownloadVisualize
BU of 4wln by Molmil
Crystal structure of apo MDH2
分子名称: Malate dehydrogenase, mitochondrial, PHOSPHATE ION
著者Eo, Y.M, Han, B.G, Ahn, H.C.
登録日2014-10-07
公開日2015-11-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Crystal structure of apo MDH2
To Be Published
7X3T
DownloadVisualize
BU of 7x3t by Molmil
Cryo-EM structure of ISW1a-dinucleosome
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (343-MER), ...
著者Lifei, L, Kangjing, C, Chen, Z.
登録日2022-03-01
公開日2023-09-20
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
7X3W
DownloadVisualize
BU of 7x3w by Molmil
Cryo-EM structure of ISW1-N1 nucleosome
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (146-MER), ...
著者Lifei, L, Kangjing, C, Chen, Z.
登録日2022-03-01
公開日2023-09-20
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
4BRO
DownloadVisualize
BU of 4bro by Molmil
Legionella pneumophila NTPDase1 crystal form IV (part-open)
分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BR9
DownloadVisualize
BU of 4br9 by Molmil
Legionella pneumophila NTPDase1 crystal form II, closed, apo
分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GLYCEROL, SULFATE ION
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BQZ
DownloadVisualize
BU of 4bqz by Molmil
Rat NTPDase2 in complex with Mg GMPPNP
分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2, GLYCEROL, MAGNESIUM ION, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-03
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BR5
DownloadVisualize
BU of 4br5 by Molmil
Rat NTPDase2 in complex with Zn AMPPNP
分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2, GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
8RGM
DownloadVisualize
BU of 8rgm by Molmil
Cryo-EM structure of nucleosome containing Widom603 DNA
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J, Histone H3.1, ...
著者Motorin, N.A, Afonin, D, Armeev, G.A, Moiseenko, A, Zhao, L, Vasiliev, V, Oleinikov, P, Shaytan, A, Shi, X, Studitsky, V, Sokolova, O.
登録日2023-12-14
公開日2025-01-01
最終更新日2025-05-14
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure and dynamics of a nucleosome core particle based on Widom 603 DNA sequence.
Structure, 33, 2025
6M4G
DownloadVisualize
BU of 6m4g by Molmil
Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2
分子名称: DNA (93-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ...
著者Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q.
登録日2020-03-06
公開日2020-09-23
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2.
Embo J., 40, 2021
7KBE
DownloadVisualize
BU of 7kbe by Molmil
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
分子名称: DNA (157-MER), Histone H2A, Histone H2B 1.1, ...
著者Arimura, Y, Funabiki, H.
登録日2020-10-02
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural features of nucleosomes in interphase and metaphase chromosomes.
Mol.Cell, 81, 2021
7KBD
DownloadVisualize
BU of 7kbd by Molmil
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
分子名称: DNA (151-MER), Histone H2A, Histone H2B 1.1, ...
著者Arimura, Y, Funabiki, H.
登録日2020-10-02
公開日2021-09-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.38 Å)
主引用文献Structural features of nucleosomes in interphase and metaphase chromosomes.
Mol.Cell, 81, 2021
8VX5
DownloadVisualize
BU of 8vx5 by Molmil
Nucleosome core particle containing an 8-oxoG damage site
分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ...
著者You, Q, Li, H.
登録日2024-02-03
公開日2024-10-09
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Human 8-oxoguanine glycosylase OGG1 binds nucleosome at the dsDNA ends and the super-helical locations.
Commun Biol, 7, 2024
7UV9
DownloadVisualize
BU of 7uv9 by Molmil
KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate
分子名称: DNA (185-MER), FE (III) ION, Histone H2A type 1, ...
著者Spangler, C.J, Skrajna, A, Foley, C.A, Budziszewski, G.R, Azzam, D.N, James, L.I, Frye, S.V, McGinty, R.K.
登録日2022-04-29
公開日2023-02-22
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis of paralog-specific KDM2A/B nucleosome recognition.
Nat.Chem.Biol., 19, 2023
4CP5
DownloadVisualize
BU of 4cp5 by Molmil
ndpK in complex with (Rp)-SPMPApp
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC, [[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-sulfanyl-phosphoryl] phosphono hydrogen phosphate
著者Priet, S, Ferron, F, Alvarez, K, Verron, M, Canard, B.
登録日2014-01-31
公開日2015-02-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Enzymatic Synthesis of Acyclic Nucleoside Thiophosphonate Diphosphates: Effect of the Alpha-Phosphorus Configuration on HIV-1 RT Activity.
Antiviral Res., 117, 2015
4WZJ
DownloadVisualize
BU of 4wzj by Molmil
Spliceosomal U4 snRNP core domain
分子名称: Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein F, Small nuclear ribonucleoprotein G, ...
著者Leung, A.K.W, Nagai, K, Li, J.
登録日2014-11-19
公開日2015-01-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis.
Nature, 473, 2011

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon