PDB: 1055 件ウェブページステータス検索Chemie searchBIRD

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8SO8	Crystal structure of an N-terminally truncated variant of Escherichia coli RapA 分子名称: CHLORIDE ION, RNA polymerase-associated protein RapA, SULFATE ION 著者 Shaw, G.X, Kakar, S, Ji, X. 登録日 2023-04-28 公開日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.607 Å) 主引用文献 Crystal structure of an N-terminally truncated variant of Escherichia coli RapA To be published
8WAR	Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS. 分子名称: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... 著者 Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. 登録日 2023-09-08 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 ELECTRON MICROSCOPY (7.2 Å) 主引用文献 Structural visualization of transcription initiation in action. Science, 382, 2023
4I43	Crystal structure of Prp8:Aar2 complex 分子名称: A1 cistron-splicing factor AAR2, Pre-mRNA-splicing factor 8 著者 Galej, W.P, Oubridge, C, Newman, A.J, Nagai, K. 登録日 2012-11-27 公開日 2013-01-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of Prp8 reveals active site cavity of the spliceosome. Nature, 493, 2013
8RO0	Structure of the C. elegans Intron Lariat Spliceosome primed for disassembly (ILS') 分子名称: Cell division cycle 5-like protein, Coiled-coil domain-containing protein 12, GCF C-terminal domain-containing protein, ... 著者 Vorlaender, M.K, Rothe, P, Plaschka, C. 登録日 2024-01-11 公開日 2024-08-07 最終更新日 2024-08-21 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Mechanism for the initiation of spliceosome disassembly. Nature, 632, 2024
8RO1	Structure of the C. elegans Intron Lariat Spliceosome double-primed for disassembly (ILS'') 分子名称: CWF19-like protein 1 homolog, CWF19-like protein 2 homolog, Cell division cycle 5-like protein, ... 著者 Vorlaender, M.K, Rothe, P, Plaschka, C. 登録日 2024-01-11 公開日 2024-08-07 最終更新日 2024-08-21 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Mechanism for the initiation of spliceosome disassembly. Nature, 632, 2024
2DFX	Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor 分子名称: Colicin-E5, Colicin-E5 immunity protein 著者 Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. 登録日 2006-03-06 公開日 2007-01-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction Nucleic Acids Res., 34, 2006
8TIE	Double nuclear outer ring of Nup84-complexes from the yeast NPC 分子名称: NUP133 isoform 1, NUP145 isoform 1, Nucleoporin NUP120, ... 著者 Akey, C.W, Echeverria, I, Ouch, C, Fernandez-Martinez, J, Rout, M.P. 登録日 2023-07-19 公開日 2023-10-11 実験手法 ELECTRON MICROSCOPY (8.1 Å) 主引用文献 Implications of a multiscale structure of the yeast nuclear pore complex. Mol.Cell, 83, 2023
7F60	Crystal structure of auxiliary protein in complex with human nuclear protein 分子名称: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor 著者 Gao, X, Cui, S. 登録日 2021-06-23 公開日 2022-09-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
2I2X	Crystal structure of methanol:cobalamin methyltransferase complex MtaBC from Methanosarcina barkeri 分子名称: 5-HYDROXYBENZIMIDAZOLYLCOB(III)AMIDE, Methyltransferase 1, POTASSIUM ION, ... 著者 Hagemeier, C.H, Kruer, M, Thauer, R.K, Warkentin, E, Ermler, U. 登録日 2006-08-17 公開日 2006-11-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Insight into the mechanism of biological methanol activation based on the crystal structure of the methanol-cobalamin methyltransferase complex Proc.Natl.Acad.Sci.Usa, 103, 2006
7F90	Crystal structure of SARS auxiliary protein in complex with human nuclear protein 分子名称: Nuclear pore complex protein Nup98-Nup96, ORF6 protein, mRNA export factor 著者 Gao, X, Cui, S. 登録日 2021-07-03 公開日 2022-09-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structural basis for Sarbecovirus ORF6 mediated blockage of nucleocytoplasmic transport Nat Commun, 13, 2022
2DT7	Solution structure of the second SURP domain of human splicing factor SF3a120 in complex with a fragment of human splicing factor SF3a60 分子名称: Splicing factor 3 subunit 1, Splicing factor 3A subunit 3 著者 He, F, Kuwasako, K, Inoue, M, Guntert, P, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-07-11 公開日 2006-12-26 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP Structure, 14, 2006
2DOI	The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcus protein PAM 分子名称: Angiostatin, Plasminogen-binding group A streptococcal M-like protein PAM 著者 Cnudde, S.E, Prorok, M, Castellino, F.J, Geiger, J.H. 登録日 2006-04-29 公開日 2006-12-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcal surface protein PAM Biochemistry, 45, 2006
8T12	Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 ordered. 分子名称: Non-structural protein 5, Signal transducer and activator of transcription 2, ZINC ION 著者 Biswal, M, Lu, J, Song, J. 登録日 2023-06-01 公開日 2024-01-17 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 A conformational selection mechanism of flavivirus NS5 for species-specific STAT2 inhibition. Commun Biol, 7, 2024
8T13	Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 disordered 分子名称: Non-structural protein 5, Signal transducer and activator of transcription 2, ZINC ION 著者 Biswal, M, Lu, J, Song, J. 登録日 2023-06-01 公開日 2024-01-17 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 A conformational selection mechanism of flavivirus NS5 for species-specific STAT2 inhibition. Commun Biol, 7, 2024
2DOH	The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound a to a peptide from the group A streptococcal surface protein PAM 分子名称: 1,4-DIETHYLENE DIOXIDE, Angiostatin, Plasminogen-binding group A streptococcal M-like protein PAM 著者 Cnudde, S.E, Prorok, M, Castellino, F.J, Geiger, J.H. 登録日 2006-04-29 公開日 2006-12-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcal surface protein PAM Biochemistry, 45, 2006
8Y6O	Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Centrosomal AT-AC splicing factor, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Bai, R, Yuan, M, Zhang, P, Luo, T, Shi, Y, Wan, R. 登録日 2024-02-02 公開日 2024-03-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.38 Å) 主引用文献 Structural basis of U12-type intron engagement by the fully assembled human minor spliceosome. Science, 383, 2024
8SP4	Crystal structure of N-terminally truncated Escherichia coli RapA in complex with ATP-gamma-S 分子名称: CHLORIDE ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, RNA polymerase-associated protein RapA 著者 Shaw, G.X, Kakar, S, Ji, X. 登録日 2023-05-02 公開日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Crystal structure of N-terminally truncated Escherichia coli RapA in complex with ATP-gamma-S To be published
8SPG	Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... 著者 Shaw, G.X, Ji, X. 登録日 2023-05-03 公開日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP To be published
8YAX	SARS-CoV-2 DMV nsp3-4 pore complex (full-pore) 分子名称: Non-structural protein 4, Papain-like protease nsp3 著者 Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T. 登録日 2024-02-10 公開日 2024-06-19 最終更新日 2024-09-18 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Molecular architecture of coronavirus double-membrane vesicle pore complex. Nature, 633, 2024
8YB7	SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C3 symmetry) 分子名称: Non-structural protein 4, Papain-like protease nsp3 著者 Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T. 登録日 2024-02-12 公開日 2024-06-19 最終更新日 2024-09-18 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Molecular architecture of coronavirus double-membrane vesicle pore complex. Nature, 633, 2024
8YB5	SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry) 分子名称: Non-structural protein 4, Papain-like protease nsp3 著者 Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T. 登録日 2024-02-11 公開日 2024-06-19 最終更新日 2024-09-18 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Molecular architecture of coronavirus double-membrane vesicle pore complex. Nature, 633, 2024
8Y6K	Cryo-EM structure of full-length MICAL1 in the autoinhibited state 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, ZINC ION, [F-actin]-monooxygenase MICAL1 著者 Niu, F, Wei, Z. 登録日 2024-02-02 公開日 2024-08-28 実験手法 ELECTRON MICROSCOPY (3.94 Å) 主引用文献 Autoinhibition and relief mechanisms for MICAL monooxygenases in F-actin disassembly. Nat Commun, 15, 2024
8U4N	Structure of Apo CXCR4/Gi complex 分子名称: C-X-C chemokine receptor type 4, CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... 著者 Saotome, K, McGoldrick, L.L, Franklin, M.C. 登録日 2023-09-11 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8U4R	Structure of REGN7663-Fab bound CXCR4 分子名称: C-X-C chemokine receptor type 4, CHOLESTEROL, REGN7663 Fab heavy chain, ... 著者 Saotome, K, McGoldrick, L.L, Franklin, M.C. 登録日 2023-09-11 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8U4T	Structure of tetrameric CXCR4 in complex with REGN7663 Fab 分子名称: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, C-X-C chemokine receptor type 4, CHOLESTEROL, ... 著者 Saotome, K, McGoldrick, L.L, Franklin, M.C. 登録日 2023-09-11 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.38 Å) 主引用文献 Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024

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