PDB: 41831 件ウェブページステータス検索Chemie searchBIRD

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8GHZ	Cryo-EM structure of fish immunogloblin M-Fc 分子名称: Teleost immunoglobulin M protein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Lyu, M, Stadtmueller, B.M, Malyutin, A.G. 登録日 2023-03-13 公開日 2023-11-08 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 The structure of the teleost Immunoglobulin M core provides insights on polymeric antibody evolution, assembly, and function. Nat Commun, 14, 2023
4BRO	Legionella pneumophila NTPDase1 crystal form IV (part-open) 分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BR9	Legionella pneumophila NTPDase1 crystal form II, closed, apo 分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GLYCEROL, SULFATE ION 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
2JCS	Active site mutant of dNK from D. melanogaster with dTTP bound 分子名称: DEOXYNUCLEOSIDE KINASE, MAGNESIUM ION, THYMIDINE-5'-TRIPHOSPHATE 著者 Egeblad-Welin, L, Sonntag, Y, Eklund, H, Munch-Petersen, B. 登録日 2007-01-03 公開日 2007-02-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Functional Studies of Active-Site Mutants from Drosophila Melanogaster Deoxyribonucleoside Kinase. Investigations of the Putative Catalytic Glutamate- Arginine Pair and of Residues Responsible for Substrate Specificity. FEBS J., 274, 2007
8RGM	Cryo-EM structure of nucleosome containing Widom603 DNA 分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J, Histone H3.1, ... 著者 Motorin, N.A, Afonin, D, Armeev, G.A, Moiseenko, A, Zhao, L, Vasiliev, V, Oleinikov, P, Shaytan, A, Shi, X, Studitsky, V, Sokolova, O. 登録日 2023-12-14 公開日 2025-01-01 最終更新日 2025-05-14 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure and dynamics of a nucleosome core particle based on Widom 603 DNA sequence. Structure, 33, 2025
4BQZ	Rat NTPDase2 in complex with Mg GMPPNP 分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2, GLYCEROL, MAGNESIUM ION, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-03 公開日 2013-07-17 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
4BR5	Rat NTPDase2 in complex with Zn AMPPNP 分子名称: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2, GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Zebisch, M, Schaefer, P, Lauble, P, Straeter, N. 登録日 2013-06-04 公開日 2013-07-17 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure, 21, 2013
7U51	Nucleosome core particle with AP-site at SHL-6 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Freudenthal, B.D, Weaver, T.M. 登録日 2022-03-01 公開日 2022-09-07 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for APE1 processing DNA damage in the nucleosome. Nat Commun, 13, 2022
7U52	nucleosome core particle with AP-site at SHL-6.5 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Freudenthal, B.D, Weaver, T.M. 登録日 2022-03-01 公開日 2022-09-07 最終更新日 2025-06-04 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for APE1 processing DNA damage in the nucleosome. Nat Commun, 13, 2022
7U53	Nucleosome core particle with AP-site at SHL0 分子名称: DNA (144-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Freudenthal, B.D, Weaver, T.M. 登録日 2022-03-01 公開日 2022-09-07 最終更新日 2025-05-14 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural basis for APE1 processing DNA damage in the nucleosome. Nat Commun, 13, 2022
3ZX3	Crystal Structure and Domain Rotation of NTPDase1 CD39 分子名称: ACETIC ACID, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 1, ... 著者 Zebisch, M, Schaefer, P, Straeter, N. 登録日 2011-08-04 公開日 2011-11-30 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystallographic Evidence for a Domain Motion in Rat Nucleoside Triphosphate Diphosphohydrolase (Ntpdase) 1. J.Mol.Biol., 415, 2012
3ZX2	NTPDase1 in complex with Decavanadate 分子名称: ACETIC ACID, CHLORIDE ION, DECAVANADATE, ... 著者 Zebisch, M, Schaefer, P, Straeter, N. 登録日 2011-08-04 公開日 2011-11-30 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Crystallographic Evidence for a Domain Motion in Rat Nucleoside Triphosphate Diphosphohydrolase (Ntpdase) 1. J.Mol.Biol., 415, 2012
9NH8	CHD1-nucleosome complex (anchored state) 分子名称: ARGININE, Chromodomain-helicase-DNA-binding protein 1, DNA (158-MER), ... 著者 James, A.M, Farnung, L. 登録日 2025-02-24 公開日 2025-05-07 最終更新日 2025-05-28 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis of human CHD1 nucleosome recruitment and pausing. Mol.Cell, 85, 2025
8Y3E	Cryo-EM structure of the overlapping di-nucleosome (open form) 分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H. 登録日 2024-01-29 公開日 2025-01-29 実験手法 ELECTRON MICROSCOPY (5.32 Å) 主引用文献 Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering. Pnas Nexus, 3, 2024
8Y3C	Cryo-EM structure of the overlapping di-nucleosome (closed form) 分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H. 登録日 2024-01-29 公開日 2025-01-29 実験手法 ELECTRON MICROSCOPY (5.21 Å) 主引用文献 Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering. Pnas Nexus, 3, 2024
7UV9	KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate 分子名称: DNA (185-MER), FE (III) ION, Histone H2A type 1, ... 著者 Spangler, C.J, Skrajna, A, Foley, C.A, Budziszewski, G.R, Azzam, D.N, James, L.I, Frye, S.V, McGinty, R.K. 登録日 2022-04-29 公開日 2023-02-22 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis of paralog-specific KDM2A/B nucleosome recognition. Nat.Chem.Biol., 19, 2023
8Y3D	Cryo-EM structure of the overlapping di-nucleosome (intermediate form2) 分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H. 登録日 2024-01-29 公開日 2025-01-29 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering. Pnas Nexus, 3, 2024
8Y3F	Cryo-EM structure of the overlapping di-nucleosome (intermediate form1) 分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Tanaka, H, Nishimura, M, Takizawa, Y, Nozawa, K, Ehara, H, Sekine, S, Kurumizaka, H. 登録日 2024-01-29 公開日 2025-01-29 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 Asymmetric fluctuation of overlapping dinucleosome studied by cryoelectron microscopy and small-angle X-ray scattering. Pnas Nexus, 3, 2024
9OBA	Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum containing phosphorylated active site histidine 分子名称: nucleoside-diphosphate kinase 著者 Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2025-04-22 公開日 2025-04-30 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Crystal structure of nucleoside-diphosphate kinase from Cryptosporidium parvum containing phosphorylated active site histidine To be published
8VX5	Nucleosome core particle containing an 8-oxoG damage site 分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... 著者 You, Q, Li, H. 登録日 2024-02-03 公開日 2024-10-09 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Human 8-oxoguanine glycosylase OGG1 binds nucleosome at the dsDNA ends and the super-helical locations. Commun Biol, 7, 2024
4WLF	Crystal structure of L-malate bound MDH2 分子名称: (2S)-2-hydroxybutanedioic acid, Malate dehydrogenase, mitochondrial, ... 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-07 公開日 2015-11-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of L-malate bound MDH2 To Be Published
4WLN	Crystal structure of apo MDH2 分子名称: Malate dehydrogenase, mitochondrial, PHOSPHATE ION 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-07 公開日 2015-11-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Crystal structure of apo MDH2 To Be Published
4WLE	Crystal structure of citrate bound MDH2 分子名称: CITRIC ACID, Malate dehydrogenase, mitochondrial 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-07 公開日 2015-11-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of citrate bound MDH2 To Be Published
4WLV	Crystal structure of NAD bound MDH2 分子名称: Malate dehydrogenase, mitochondrial, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-08 公開日 2015-11-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of NAD bound MDH2 To Be Published
4WLU	Crystal structure of L-malate and NAD bound MDH2 分子名称: (2S)-2-hydroxybutanedioic acid, Malate dehydrogenase, mitochondrial, ... 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-08 公開日 2015-11-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Crystal structure of L-malate and NAD bound MDH2 To Be Published

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