Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3EF8
DownloadVisualize
BU of 3ef8 by Molmil
Crystal structure of Putative Scytalone Dehydratase (YP_496742.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.50 A resolution
分子名称: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Putative Scyalone Dehydratase, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2008-09-08
公開日2008-09-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Putative Scyalone Dehydratase (YP_496742.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.50 A resolution
To be published
7HMM
DownloadVisualize
BU of 7hmm by Molmil
PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z165170770
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase TRIM21, N-methyl-4-sulfamoylbenzamide, ...
著者Kim, Y, Marples, P, Fearon, D, von Delft, F, Knapp, S, Kraemer, A, Structural Genomics Consortium (SGC)
登録日2024-11-04
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献PanDDA analysis group deposition
To Be Published
1L55
DownloadVisualize
BU of 1l55 by Molmil
ANALYSIS OF THE INTERACTION BETWEEN CHARGED SIDE CHAINS AND THE ALPHA-HELIX DIPOLE USING DESIGNED THERMOSTABLE MUTANTS OF PHAGE T4 LYSOZYME
分子名称: BETA-MERCAPTOETHANOL, CHLORIDE ION, LYSOZYME
著者Nicholson, H, Matthews, B.W.
登録日1991-05-06
公開日1991-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme.
Biochemistry, 30, 1991
6A98
DownloadVisualize
BU of 6a98 by Molmil
Crystal structure of a cyclase from Fischerella sp. TAU
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, aromatic prenyltransferase, ...
著者Hu, X.Y, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2018-07-12
公開日2018-12-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献The Crystal Structure of a Class of Cyclases that Catalyze the Cope Rearrangement
Angew. Chem. Int. Ed. Engl., 57, 2018
7HOB
DownloadVisualize
BU of 7hob by Molmil
PanDDA analysis group deposition -- Crystal Structure of TRIM21, ground state
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase TRIM21, SULFATE ION
著者Kim, Y, Marples, P, Fearon, D, von Delft, F, Knapp, S, Kraemer, A, Structural Genomics Consortium (SGC)
登録日2024-11-05
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献PanDDA analysis group deposition of ground-state model
To Be Published
7HM6
DownloadVisualize
BU of 7hm6 by Molmil
PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z1172243962
分子名称: 1,2-ETHANEDIOL, 5-fluoro-N-(oxan-4-yl)pyridin-2-amine, E3 ubiquitin-protein ligase TRIM21, ...
著者Kim, Y, Marples, P, Fearon, D, von Delft, F, Knapp, S, Kraemer, A, Structural Genomics Consortium (SGC)
登録日2024-11-04
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献PanDDA analysis group deposition
To Be Published
6A1N
DownloadVisualize
BU of 6a1n by Molmil
Mandelate oxidase mutant-Y128F with (2R,3S)-3-fluoro-2-hydroxy-3-phenylpropanoic acid
分子名称: (2R,3S)-3-fluoro-2-hydroxy-3-phenylpropanoic acid, 4-hydroxymandelate oxidase, FLAVIN MONONUCLEOTIDE, ...
著者Li, T.L, Lin, K.H.
登録日2018-06-07
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.421 Å)
主引用文献Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.
Protein Sci., 29, 2020
7HNY
DownloadVisualize
BU of 7hny by Molmil
PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z44592329
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase TRIM21, N-phenyl-N'-pyridin-3-ylurea, ...
著者Kim, Y, Marples, P, Fearon, D, von Delft, F, Knapp, S, Kraemer, A, Structural Genomics Consortium (SGC)
登録日2024-11-04
公開日2024-11-27
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献PanDDA analysis group deposition
To Be Published
2X2F
DownloadVisualize
BU of 2x2f by Molmil
Dynamin 1 GTPase dimer, short axis form
分子名称: DYNAMIN-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Chappie, J.S, Acharya, S, Leonard, M, Schmid, S.L, Dyda, F.
登録日2010-01-13
公開日2010-04-28
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献G Domain Dimerization Controls Dynamin'S Assembly-Stimulated Gtpase Activity.
Nature, 465, 2010
8IOT
DownloadVisualize
BU of 8iot by Molmil
Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
登録日2023-03-13
公開日2023-05-24
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (2.51 Å)
主引用文献Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants.
Nat Commun, 14, 2023
5ME0
DownloadVisualize
BU of 5me0 by Molmil
Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Lopez-Alonso, J.P, Fabbretti, A, Kaminishi, T, Iturrioz, I, Brandi, L, Gil Carton, D, Gualerzi, C, Fucini, P, Connell, S.
登録日2016-11-14
公開日2017-01-11
最終更新日2025-10-01
実験手法ELECTRON MICROSCOPY (13.5 Å)
主引用文献Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways.
Nucleic Acids Res., 45, 2017
3U7R
DownloadVisualize
BU of 3u7r by Molmil
FerB - flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from Paracoccus denitrificans
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, NADPH-dependent FMN reductase, NONAETHYLENE GLYCOL
著者Marek, J, Klumpler, T, Sedlacek, V, Kucera, I.
登録日2011-10-14
公開日2012-10-24
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The Structural and Functional Basis of Catalysis Mediated by NAD(P)H:acceptor Oxidoreductase (FerB) of Paracoccus denitrificans.
Plos One, 9, 2014
8BZM
DownloadVisualize
BU of 8bzm by Molmil
FOXK1-ELF1-heterodimer bound to DNA
分子名称: DNA, ETS-related transcription factor Elf-1, Forkhead box protein K1, ...
著者Morgunova, E, Popov, A, Yin, Y, Taipale, J.
登録日2022-12-15
公開日2023-12-27
最終更新日2025-04-23
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献DNA-guided transcription factor interactions extend human gene regulatory code.
Nature, 2025
1RBR
DownloadVisualize
BU of 1rbr by Molmil
STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY
分子名称: RIBONUCLEASE H
著者Ishikawa, K, Kimura, S, Kanaya, S, Morikawa, K, Nakamura, H.
登録日1993-02-16
公開日1994-01-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural study of mutants of Escherichia coli ribonuclease HI with enhanced thermostability.
Protein Eng., 6, 1993
4Y3N
DownloadVisualize
BU of 4y3n by Molmil
Endothiapepsin in complex with fragment 273
分子名称: 2-[(1S)-2-acetyl-1,2-dihydroisoquinolin-1-yl]-N,N-dimethylacetamide, ACETATE ION, Endothiapepsin, ...
著者Krimmer, S.G, Heine, A, Klebe, G.
登録日2015-02-10
公開日2016-02-17
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystallographic Fragment Screening of an Entire Library
To Be Published
6DX5
DownloadVisualize
BU of 6dx5 by Molmil
Crystal structure of the viral OTU domain protease from Farallon virus
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, RNA-dependent RNA polymerase
著者Beldon, B.S, Dzimianski, J.V, Daczkowski, C.M, Goodwin, O.Y, Pegan, S.D.
登録日2018-06-28
公開日2018-12-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.224 Å)
主引用文献Probing the impact of nairovirus genomic diversity on viral ovarian tumor domain protease (vOTU) structure and deubiquitinase activity.
PLoS Pathog., 15, 2019
2ALC
DownloadVisualize
BU of 2alc by Molmil
ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR DNA-BINDING DOMAIN FROM ASPERGILLUS NIDULANS
分子名称: PROTEIN (ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR), ZINC ION
著者Cerdan, R, Cahuzac, B, Felenbok, B, Guittet, E.
登録日1999-01-20
公開日2000-01-21
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding properties of this zinc binuclear cluster protein.
J.Mol.Biol., 295, 2000
6DXQ
DownloadVisualize
BU of 6dxq by Molmil
Crystal structure of the LigJ Hydratase product complex with 4-carboxy-4-hydroxy-2-oxoadipate
分子名称: (2S)-2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid, 4-oxalomesaconate hydratase, ZINC ION
著者Mabanglo, M.F, Raushel, F.M.
登録日2018-06-29
公開日2018-09-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structure and Reaction Mechanism of the LigJ Hydratase: An Enzyme Critical for the Bacterial Degradation of Lignin in the Protocatechuate 4,5-Cleavage Pathway.
Biochemistry, 57, 2018
7WW0
DownloadVisualize
BU of 7ww0 by Molmil
The crystal structure of FinI complex with SAH
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Zhou, J, Lu, J.
登録日2022-02-12
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The crystal structure of FinI complex with SAH
To Be Published
7LCB
DownloadVisualize
BU of 7lcb by Molmil
C1B domain of Protein kinase C in complex with prostratin and phosphatidylcholine
分子名称: (4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide, Protein kinase C delta type, ZINC ION, ...
著者Katti, S.S, Krieger, I.V.
登録日2021-01-10
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural anatomy of Protein Kinase C C1 domain interactions with diacylglycerol and other agonists.
Nat Commun, 13, 2022
4YH5
DownloadVisualize
BU of 4yh5 by Molmil
Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Levoglucosan kinase, ...
著者Bacik, J.P.
登録日2015-02-26
公開日2015-09-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Producing Glucose 6-Phosphate from Cellulosic Biomass: STRUCTURAL INSIGHTS INTO LEVOGLUCOSAN BIOCONVERSION.
J.Biol.Chem., 290, 2015
7LV3
DownloadVisualize
BU of 7lv3 by Molmil
Crystal structure of human protein kinase G (PKG) R-C complex in inhibited state
分子名称: 1,2-ETHANEDIOL, Isoform Beta of cGMP-dependent protein kinase 1, MANGANESE (II) ION, ...
著者Sharma, R, Lying, Q, Casteel, D, Kim, C.
登録日2021-02-23
公開日2022-08-24
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献An auto-inhibited state of protein kinase G and implications for selective activation.
Elife, 11, 2022
5CVI
DownloadVisualize
BU of 5cvi by Molmil
Structure of the manganese regulator SloR
分子名称: 1,2-ETHANEDIOL, SloR, ZINC ION
著者Nye, D, Glasfeld, A.
登録日2015-07-27
公開日2015-08-12
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献SloR structure and DNA binding studies inform the SloR-SRE interaction in Streptococcus mutans
to be published
4F1K
DownloadVisualize
BU of 4f1k by Molmil
Crystal structure of the MG2+ free VWA domain of plasmodium falciparum trap protein
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
著者Pihlajamaa, T, Knuuti, J, Kajander, T, Sharma, A, Permi, P.
登録日2012-05-07
公開日2013-01-30
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.
Biochem.J., 450, 2013
1RLJ
DownloadVisualize
BU of 1rlj by Molmil
Structural Genomics, a Flavoprotein NrdI from Bacillus subtilis
分子名称: FLAVIN MONONUCLEOTIDE, IODIDE ION, NrdI protein
著者Wu, R, Zhang, R, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2003-11-25
公開日2004-07-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献1.5A crystal structure of a thioredoxin-like protein NrdI from Bacillus subtilis
To be Published

245663

件を2025-12-03に公開中

PDB statisticsPDBj update infoContact PDBjnumon