PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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7UOG	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and asymmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence. 分子名称: DNA (5'-D(AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*CP*CP*GP*CP*CP*TP*T)-3', DNA (5'-D(GP*TP*AP*AP*GP*GP*CP*GP*GP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*G)-3', MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2022-04-12 公開日 2023-04-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
9CEX	Spizellomyces punctatus Fanzor (SpuFz) State 4 分子名称: DNA (29-MER), DNA (5'-D(*(MG)*(MG)P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CA0	Human TOP3B-TDRD3 core complex in DNA pre-cleavage state 分子名称: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ... 著者 Yang, X, Chen, X, Yang, W, Pommier, Y. 登録日 2024-06-16 公開日 2024-07-17 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.48 Å) 主引用文献 Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics To Be Published
9BAQ	CryoEM structure of DIM2-HP1-H3K9me3-DNA complex 分子名称: DNA (5'-D(*AP*CP*TP*AP*CP*T)-R(P*(PYO))-D(P*CP*TP*CP*CP*TP*CP*CP*TP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*TP*AP*GP*T)-3'), DNA (cytosine-5-)-methyltransferase, ... 著者 Song, J, Shao, Z. 登録日 2024-04-04 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 CryoEM structure of DIM2-HP1-H3K9me3-DNA complex To Be Published
9CEW	Spizellomyces punctatus Fanzor (SpuFz) State 3 分子名称: DNA (29-MER), DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
5E17	T. thermophilus transcription initiation complex having a RRR discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 7 (RPo-GGG-7) 分子名称: DNA (27-MER), DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Zhang, Y, Ebright, R.H. 登録日 2015-09-29 公開日 2016-03-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science, 351, 2016
5E18	T. thermophilus transcription initiation complex having a YYY discriminator sequence and a nontemplate-strand length corresponding to TSS selection at position 8 (RPo-CCC-8) 分子名称: DNA (28-MER), DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Zhang, Y, Ebright, R.H. 登録日 2015-09-29 公開日 2016-03-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection. Science, 351, 2016
9CA1	Human TOP3B-TDRD3 core complex in DNA religation state 分子名称: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ... 著者 Yang, X, Chen, X, Yang, W, Pommier, Y. 登録日 2024-06-16 公開日 2024-07-17 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.26 Å) 主引用文献 Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics To Be Published
9CF2	Parasitella parasitica Fanzor (PpFz) State 3 分子名称: DNA non-target strand, DNA substrate model, DNA target strand, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.15 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9DP3	APE1 N174D Product Complex with Abasic DNA 分子名称: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*(3DR)P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ... 著者 Hoitsma, N.M, DeHart, K.D, Freudenthal, B.D. 登録日 2024-09-20 公開日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 N174 Physically and Chemically Stabilizes Abasic DNA During the APE1 Endonuclease Reaction To Be Published
2DUN	Solution structure of BRCT domain of DNA polymerase mu 分子名称: DNA polymerase mu 著者 Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-07-25 公開日 2007-01-25 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of BRCT domain of DNA polymerase mu To be Published
9BW1	TnsABCD-DNA transpososome 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Integrase, LE_polyA, ... 著者 Chang, L, Wang, S. 登録日 2024-05-20 公開日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.65 Å) 主引用文献 Structure of TnsABCD transpososome reveals mechanisms of targeted DNA transposition. Cell, 2024
9CES	Guillardia theta Fanzor (GtFz) State 2 分子名称: DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*TP*AP*AP*AP*GP*GP*CP*CP*CP*CP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*GP*GP*GP*GP*CP*CP*TP*TP*TP*AP*AP*G)-3'), Maltose/maltodextrin-binding periplasmic protein,Guillardia theta Fanzor1, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
5XJ0	T. thermophilus RNA polymerase holoenzyme bound with gp39 and gp76 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Ooi, W.Y, Murayama, Y, Mekler, V, Minakhin, L, Severinov, K, Yokoyama, S, Sekine, S. 登録日 2017-04-28 公開日 2017-12-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (4.004 Å) 主引用文献 A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation Nucleic Acids Res., 46, 2018
9C9Y	Human TOP3B-TDRD3 core complex in DNA pre-cleavage state 分子名称: DNA (5'-D(P*AP*CP*TP*AP*AP*AP*AP*T)-3'), DNA topoisomerase 3-beta-1, MANGANESE (II) ION, ... 著者 Yang, X, Chen, X, Yang, W, Pommier, Y. 登録日 2024-06-16 公開日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics To Be Published
9CF1	Parasitella parasitica Fanzor (PpFz) State 2 分子名称: DNA non-target strand, DNA target strand, Maltose/maltodextrin-binding periplasmic protein,Parasitella parasitica Fanzor 1, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.52 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CF3	Parasitella parasitica Fanzor (PpFz) State 4 分子名称: DNA non-target strand, DNA target strand, MAGNESIUM ION, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9GSQ	DNA binding domain of J-DNA Binding Protein 3 (JBP3) 分子名称: CHLORIDE ION, DNA binding domain of J-DNA binding protein 3, GLYCEROL, ... 著者 de Vries, I, Adamopoulos, A, Joosten, R.P, Perrakis, A. 登録日 2024-09-16 公開日 2024-09-25 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Base-J binding proteins JBP1 and JBP3 have conserved structures of their J-DNA binding domain but drastically different affinities To Be Published
9CF0	Parasitella parasitica Fanzor (PpFz) State 1 分子名称: DNA non-target strand, DNA target strand, Maltose/maltodextrin-binding periplasmic protein,Parasitella parasitica Fanzor 1, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.47 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CEV	Spizellomyces punctatus Fanzor (SpuFz) State 2 分子名称: DNA (35-MER), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), MAGNESIUM ION, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.26 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CEY	Spizellomyces punctatus Fanzor (SpuFz) State 5 分子名称: DNA (26-MER), DNA (36-MER), MAGNESIUM ION, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.22 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CEZ	Spizellomyces punctatus Fanzor (SpuFz) State 6 分子名称: DNA (27-MER), DNA (5'-D(P*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), MAGNESIUM ION, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CEU	Spizellomyces punctatus Fanzor (SpuFz) State 1 分子名称: DNA (5'-D(P*CP*CP*TP*AP*TP*AP*GP*AP*TP*AP*TP*GP*CP*CP*CP*GP*GP*GP*TP*AP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), Maltose/maltodextrin-binding periplasmic protein,Spizellomyces punctatus Fanzor 1, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.29 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
9CET	Guillardia theta Fanzor (GtFz) State 3 分子名称: DNA (28-MER), DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*TP*AP*AP*AP*GP*GP*CP*CP*CP*CP*GP*GP*G)-3'), Maltose/maltodextrin-binding periplasmic protein,Guillardia theta Fanzor1, ... 著者 Xu, P, Saito, M, Zhang, F. 登録日 2024-06-27 公開日 2024-09-11 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into the diversity and DNA cleavage mechanism of Fanzor. Cell, 187, 2024
1O3Q	PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES 分子名称: 5'-D(*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Chen, S, Vojtechovsky, J, Parkinson, G.N, Ebright, R.H, Berman, H.M. 登録日 2003-03-18 公開日 2003-04-08 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking J.Mol.Biol., 314, 2001

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