Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4Q1F
DownloadVisualize
BU of 4q1f by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the inhibitor 12R {N-{2-[5-(4-{(1R)-1-[(4,6-diaminopyrimidin-2-yl)sulfanyl]ethyl}-5-methyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]ethyl}methanesulfonamide}
分子名称: Deoxycytidine kinase, N-{2-[5-(4-{(1R)-1-[(4,6-diaminopyrimidin-2-yl)sulfanyl]ethyl}-5-methyl-1,3-thiazol-2-yl)-2-methoxyphenoxy]ethyl}methanesulfonamide, URIDINE-5'-DIPHOSPHATE
著者Nomme, J, Lavie, A.
登録日2014-04-03
公開日2014-11-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-guided development of deoxycytidine kinase inhibitors with nanomolar affinity and improved metabolic stability.
J.Med.Chem., 57, 2014
4Q1C
DownloadVisualize
BU of 4q1c by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the inhibitor 8 {2,2'-[{4-[(2R)-4-{[(4,6-diaminopyrimidin-2-yl)sulfanyl]methyl}-5-propyl-2,3-dihydro-1,3-thiazol-2-yl]benzene-1,2-diyl}bis(oxy)]diethanol}
分子名称: 2,2'-((4-(4-(((4,6-diaminopyrimidin-2-yl)thio)methyl)-5-propylthiazol-2-yl)-1,2-phenylene)bis(oxy))bis(ethan-1-ol), Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
著者Nomme, J, Lavie, A.
登録日2014-04-03
公開日2014-11-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-guided development of deoxycytidine kinase inhibitors with nanomolar affinity and improved metabolic stability.
J.Med.Chem., 57, 2014
3NBA
DownloadVisualize
BU of 3nba by Molmil
Phosphopantetheine Adenylyltranferase from Mycobacterium tuberculosis in complex with adenosine-5'-[(alpha,beta)-methyleno]triphosphate (AMPCPP)
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Phosphopantetheine adenylyltransferase
著者Wubben, T.J, Mesecar, A.D.
登録日2010-06-03
公開日2010-09-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Kinetic, thermodynamic, and structural insight into the mechanism of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis.
J.Mol.Biol., 404, 2010
4Q7E
DownloadVisualize
BU of 4q7e by Molmil
Non-phosphorylated HemR Receiver Domain from Leptospira biflexa
分子名称: GLYCEROL, Response regulator of a two component regulatory system, SULFATE ION
著者Morero, N.R, Buschiazzo, A.
登録日2014-04-24
公開日2014-05-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.441 Å)
主引用文献HemR is an OmpR/PhoB-like response regulator from Leptospira, which simultaneously effects transcriptional activation and repression of key haem metabolism genes.
Mol.Microbiol., 94, 2014
8UBY
DownloadVisualize
BU of 8uby by Molmil
Choline-bound FLVCR1
分子名称: CHOLESTEROL HEMISUCCINATE, CHOLINE ION, Heme transporter FLVCR1
著者Hite, R.K, Son, Y.
登録日2023-09-25
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1.
Nature, 629, 2024
8UBZ
DownloadVisualize
BU of 8ubz by Molmil
Choline-bound FLVCR1
分子名称: CHOLESTEROL HEMISUCCINATE, CHOLINE ION, Heme transporter FLVCR1
著者Hite, R.K, Son, Y.
登録日2023-09-25
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1.
Nature, 629, 2024
8UBX
DownloadVisualize
BU of 8ubx by Molmil
Ethanolamine-bound FLVCR1
分子名称: CHOLESTEROL HEMISUCCINATE, ETHANOLAMINE, Heme transporter FLVCR1
著者Hite, R.K, Son, Y.
登録日2023-09-25
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1.
Nature, 629, 2024
8UBW
DownloadVisualize
BU of 8ubw by Molmil
Choline-bound FLVCR1
分子名称: CHOLESTEROL HEMISUCCINATE, CHOLINE ION, Heme transporter FLVCR1
著者Hite, R.K, Son, Y.
登録日2023-09-25
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1.
Nature, 629, 2024
8UC0
DownloadVisualize
BU of 8uc0 by Molmil
Endogenous ligand bound FLVCR1
分子名称: CHOLESTEROL HEMISUCCINATE, Heme transporter FLVCR1
著者Hite, R.K, Son, Y.
登録日2023-09-25
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.42 Å)
主引用文献Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1.
Nature, 629, 2024
3QVS
DownloadVisualize
BU of 3qvs by Molmil
L-myo-inositol 1-phosphate synthase from Archaeoglobus fulgidus wild type
分子名称: GLYCEROL, Myo-inositol-1-phosphate synthase (Ino1), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Neelon, K, Roberts, M.F, Stec, B.
登録日2011-02-25
公開日2012-01-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS.
Biophys.J., 101, 2011
6TGA
DownloadVisualize
BU of 6tga by Molmil
Cryo-EM Structure of as isolated form of NAD+-dependent Formate Dehydrogenase from Rhodobacter capsulatus
分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
著者Wendler, P, Radon, C, Mittelstaedt, G.
登録日2019-11-15
公開日2020-04-22
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Cryo-EM structures reveal intricate Fe-S cluster arrangement and charging in Rhodobacter capsulatus formate dehydrogenase.
Nat Commun, 11, 2020
3QW2
DownloadVisualize
BU of 3qw2 by Molmil
L-myo-inositol 1-phosphate synthase from Archaeoglobus mutant N255A
分子名称: GLYCEROL, Myo-inositol-1-phosphate synthase (Ino1), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Neelon, K, Roberts, M.F, Stec, B.
登録日2011-02-26
公開日2012-01-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS.
Biophys.J., 101, 2011
8TQM
DownloadVisualize
BU of 8tqm by Molmil
Cryo-EM structure of E3 ubiquitin ligase Doa10 from Saccharomyces cerevisiae
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHOLESTEROL HEMISUCCINATE, ERAD-associated E3 ubiquitin-protein ligase DOA10, ...
著者Park, E, Itskanov, S.I.
登録日2023-08-07
公開日2024-03-13
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Substrate recognition mechanism of the endoplasmic reticulum-associated ubiquitin ligase Doa10.
Nat Commun, 15, 2024
3QVW
DownloadVisualize
BU of 3qvw by Molmil
L-myo-inositol 1-phosphate synthase from Archaeoglobus fulgidus mutant K278A
分子名称: GLYCEROL, Myo-inositol-1-phosphate synthase (Ino1), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Neelon, K, Roberts, M.F, Stec, B.
登録日2011-02-26
公開日2012-01-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS.
Biophys.J., 101, 2011
4Q1D
DownloadVisualize
BU of 4q1d by Molmil
Human dCK C4S-S74E mutant in complex with UDP and the inhibitor 9 {2-{[(1R)-1-{2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-5-propyl-1,3-thiazol-4-yl}ethyl]sulfanyl}pyrimidine-4,6-diamine}
分子名称: (R)-2-((1-(2-(3-(2-fluoroethoxy)-4-methoxyphenyl)-5-propylthiazol-4-yl)ethyl)thio)pyrimidine-4,6-diamine, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
著者Nomme, J, Lavie, A.
登録日2014-04-03
公開日2015-02-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-guided development of deoxycytidine kinase inhibitors with nanomolar affinity and improved metabolic stability.
J.Med.Chem., 57, 2014
3OH3
DownloadVisualize
BU of 3oh3 by Molmil
Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE -Arabinose
分子名称: GLYCEROL, UDP-sugar pyrophosphorylase, [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2S,3R,4S,5S)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate
著者Dickmanns, A, Damerow, S, Neumann, P, Schulz, E.-C, Lamerz, A, Routier, F, Ficner, R.
登録日2010-08-17
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major.
J.Mol.Biol., 405, 2011
3OH2
DownloadVisualize
BU of 3oh2 by Molmil
Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE-GALACTOSE
分子名称: GALACTOSE-URIDINE-5'-DIPHOSPHATE, GLYCEROL, UDP-sugar pyrophosphorylase
著者Dickmanns, A, Damerow, S, Neumann, P, Schulz, E.-C, Lamerz, A, Routier, F, Ficner, R.
登録日2010-08-17
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major.
J.Mol.Biol., 405, 2011
8TQS
DownloadVisualize
BU of 8tqs by Molmil
Complex of human thrombin (S195A) bound to a bivalent inhibitor comprised of DNA Aptamer HD22 conjugated to Dabigatran with a linker.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (30-MER), ...
著者Krishnaswamy, S, Kumar, S.
登録日2023-08-08
公開日2024-05-01
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.207 Å)
主引用文献Aptameric hirudins as selective and reversible EXosite-ACTive site (EXACT) inhibitors.
Nat Commun, 15, 2024
3OH1
DownloadVisualize
BU of 3oh1 by Molmil
Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE-Galacturonic acid
分子名称: (2S,3R,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid, GLYCEROL, UDP-sugar pyrophosphorylase
著者Dickmanns, A, Damerow, S, Neumann, P, Schulz, E.-C, Lamerz, A, Routier, F, Ficner, R.
登録日2010-08-17
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major.
J.Mol.Biol., 405, 2011
3OH4
DownloadVisualize
BU of 3oh4 by Molmil
Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE Glucose
分子名称: GLYCEROL, UDP-sugar pyrophosphorylase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Dickmanns, A, Damerow, S, Neumann, P, Schulz, E.-C, Lamerz, A, Routier, F.H, Ficner, R.
登録日2010-08-17
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major.
J.Mol.Biol., 405, 2011
8TW0
DownloadVisualize
BU of 8tw0 by Molmil
Crystal Structure of a synthetic ABC heterotrimeric Collagen-like Peptide at 1.53 A
分子名称: Collagen Mimetic Peptide A, Collagen Mimetic Peptide B, Collagen Mimetic Peptide C, ...
著者Miller, M.D, Cole, C.C, Xu, W, Walker, D.R, Hulgan, S.A.H, Pogostin, B.H, Swain, J.W.R, Duella, R, Misiura, M, Wang, X, Kolomeisky, A.B, Phillips Jr, G.N, Hartgerink, J.D.
登録日2023-08-18
公開日2024-05-29
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Heterotrimeric Collagen Helix with High Specificity of Assembly Results in a Rapid Rate of Folding
Nat.Chem., 2024
6TFJ
DownloadVisualize
BU of 6tfj by Molmil
Vip3Aa protoxin structure
分子名称: Vegetative insecticidal protein
著者Nunez-Ramirez, R, Huesa, J, Bel, Y, Ferre, J, Casino, P, Arias-Palomo, E.
登録日2019-11-14
公開日2020-08-12
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Molecular architecture and activation of the insecticidal protein Vip3Aa from Bacillus thuringiensis.
Nat Commun, 11, 2020
4PY7
DownloadVisualize
BU of 4py7 by Molmil
Crystal Structure of Fab 3.1
分子名称: antibody 3.1 heavy chain, antibody 3.1 light chain
著者Dreyfus, C.
登録日2014-03-26
公開日2014-05-21
最終更新日2014-06-04
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Alternative Recognition of the Conserved Stem Epitope in Influenza A Virus Hemagglutinin by a VH3-30-Encoded Heterosubtypic Antibody.
J.Virol., 88, 2014
3R1R
DownloadVisualize
BU of 3r1r by Molmil
RIBONUCLEOTIDE REDUCTASE R1 PROTEIN WITH AMPPNP OCCUPYING THE ACTIVITY SITE FROM ESCHERICHIA COLI
分子名称: ADENOSINE-5'-TRIPHOSPHATE, RIBONUCLEOTIDE REDUCTASE R1 PROTEIN, RIBONUCLEOTIDE REDUCTASE R2 PROTEIN
著者Eriksson, M, Eklund, H.
登録日1997-07-21
公開日1998-01-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Binding of allosteric effectors to ribonucleotide reductase protein R1: reduction of active-site cysteines promotes substrate binding.
Structure, 5, 1997
3RSR
DownloadVisualize
BU of 3rsr by Molmil
Crystal Structure of 5-NITP Inhibition of Yeast Ribonucleotide Reductase
分子名称: 1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase large chain 1
著者Wan, Q, Mohammed, F, Jha, S, Motea, E, Berdis, A, Dealwis, C.G.
登録日2011-05-02
公開日2012-11-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Evaluating the therapeutic potential of a non-natural nucleotide that inhibits human ribonucleotide reductase.
Mol.Cancer Ther., 11, 2012

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon