PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6O19	Crystal Structure of Pho7 complex with pho1 promoter site 2 分子名称: DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*AP*TP*TP*TP*CP*CP*GP*AP*AP*TP*AP*AP*T)-3'), DNA (5'-D(*TP*TP*AP*TP*TP*CP*GP*GP*AP*AP*AP*TP*TP*AP*AP*AP*AP*AP*CP*A)-3'), Transcription factor Pho7, ... 著者 Garg, A, Goldgur, Y, Shuman, S. 登録日 2019-02-18 公開日 2019-04-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.596 Å) 主引用文献 Structure of Fission Yeast Transcription Factor Pho7 Bound topho1Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis. Mol.Cell.Biol., 39, 2019
5EXR	Crystal structure of human primosome 分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase large subunit, ... 著者 Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. 登録日 2015-11-24 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Mechanism of Concerted RNA-DNA Primer Synthesis by the Human Primosome. J.Biol.Chem., 291, 2016
6R9B	Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Ye, F.Z, Zhang, X.D. 登録日 2019-04-03 公開日 2020-02-26 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7 Elife, 2020
6AMA	Structure of S. coelicolor/S. venezuelae BldC-smeA-ssfA complex to 3.09 Angstrom 分子名称: DNA (99-MER), Putative DNA-binding protein 著者 Schumacher, M.A. 登録日 2017-08-09 公開日 2018-03-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 The MerR-like protein BldC binds DNA direct repeats as cooperative multimers to regulate Streptomyces development. Nat Commun, 9, 2018
8HG1	The structure of MPXV polymerase holoenzyme in replicating state 分子名称: DNA (25-MER), DNA (38-MER), DNA polymerase, ... 著者 Peng, Q, Xie, Y.F, Kuai, L, Wang, H, Qi, J.X, Gao, F, Shi, Y. 登録日 2022-11-13 公開日 2022-12-21 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structure of monkeypox virus DNA polymerase holoenzyme. Science, 379, 2023
7D32	The TBA-Pb2+ complex in P41212 space group 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.707 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
7D31	The TBA-Pb2+ complex in P41212 space group 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.396 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
7D33	The Pb2+ complexed structure of TBA G8C mutant 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*CP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.117 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
7MZ0	Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2021-05-23 公開日 2022-05-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.021 Å) 主引用文献 Structure Of Human Dna Polymerase Beta Complexed With dzA As The Template Base In A 1-Nucleotide Gapped Dna To Be Published
7MZ3	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2021-05-24 公開日 2022-06-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.418 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA To Be Published
4YMM	Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA 分子名称: DNA 10-mer (up-primer), DNA 16-mer (template), DNA 5-mer (dn-primer), ... 著者 Lee, S, Koag, M.-C. 登録日 2015-03-06 公開日 2016-03-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA To Be Published
8HM0	F8-A22-E4 complex of MPXV in trimeric form 分子名称: DNA polymerase, DNA polymerase processivity factor component A20, E4R 著者 Li, Y.N, Shen, Y.P, Hu, Z.W, Yan, R.H. 登録日 2022-12-02 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for the assembly of the DNA polymerase holoenzyme from a monkeypox virus variant. Sci Adv, 9, 2023
8HLZ	F8-A22-E4 complex of MPXV in hexameric form 分子名称: DNA polymerase, DNA polymerase processivity factor component A20, E4R 著者 Li, Y.N, Shen, Y.P, Hu, Z.W, Yan, R.H. 登録日 2022-12-02 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis for the assembly of the DNA polymerase holoenzyme from a monkeypox virus variant. Sci Adv, 9, 2023
7UWH	CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex bound to ribonucleotide substrate 分子名称: DNA (59-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Hao, Z.T, Grower, M, Bharati, B, Proshkin, S, Epshtein, V, Svetlov, V, Nudler, E, Shamovsky, I. 登録日 2022-05-03 公開日 2023-05-31 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell, 186, 2023
7UWE	CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex 分子名称: DNA (29-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Hao, Z.T, Grower, M, Bharati, B, Proshkin, S, Epshtein, V, Svetlov, V, Nudler, E, Shamovsky, I. 登録日 2022-05-03 公開日 2023-05-31 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell, 186, 2023
8HOY	Cryo-EM structure of monkeypox virus DNA replication holoenzyme F8, A22 and E4 complex without DNA at 2.76 angostram 分子名称: DNA polymerase, DNA polymerase processivity factor component A20, E4R 著者 Xu, Y, Wu, Y, Zhang, Y, Fan, R, Yang, Y, Li, D, Yang, B, Zhang, Z, Dong, C. 登録日 2022-12-11 公開日 2023-12-13 実験手法 ELECTRON MICROSCOPY (2.76 Å) 主引用文献 Structure of DNA replication machinery from human monkeypox virus To Be Published
1HW2	FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ECHERICHIA COLI 分子名称: 5'-D(*CP*GP*AP*TP*CP*TP*GP*GP*TP*CP*CP*GP*AP*CP*CP*AP*GP*AP*TP*GP*CP*T)-3', 5'-D(*G*CP*AP*TP*CP*TP*GP*GP*TP*CP*GP*GP*AP*CP*CP*AP*GP*AP*TP*CP*GP*A)-3', FATTY ACID METABOLISM REGULATOR PROTEIN, ... 著者 Xu, Y, Heath, R.J, Li, Z, Rock, C.O, White, S.W. 登録日 2001-01-09 公開日 2001-01-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J.Biol.Chem., 276, 2001
6KVB	Structure of an intra-locked G-quadruplex 分子名称: DNA (28-mer) 著者 Maity, A, Winnerdy, F.R, Chang, W.D, Chen, G, Phan, A.T. 登録日 2019-09-03 公開日 2020-03-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs. Nucleic Acids Res., 48, 2020
6CLY	Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-02 公開日 2019-03-06 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.186 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG as the template base in a 1-nucleotide gapped DNA To Be Published
8VFJ	Polymerase Beta Host Guest Complex Containing FapydG base paired with TMP 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*TP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Oden, P.N, Ryan, B.J, Freudenthal, B.D. 登録日 2023-12-21 公開日 2024-05-08 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 52, 2024
7B0H	TgoT_6G12 Ternary complex 分子名称: DNA (5'-D(P*AP*AP*CP*GP*GP*CP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*GP*CP*AP*TP*T)-3'), DNA polymerase, ... 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-19 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
7B0F	TgoT_6G12 Binary complex 分子名称: DNA (5'-D(P*AP*AP*CP*GP*GP*CP*TP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(P*CP*GP*CP*AP*TP*T)-3'), DNA polymerase, ... 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-19 公開日 2020-12-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.797 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
4G82	Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element 分子名称: DNA (5'-D(P*GP*AP*AP*CP*AP*TP*GP*TP*TP*C)-3'), Tumor protein p73, ZINC ION 著者 Ethayathulla, A.S, Viadiu, H. 登録日 2012-07-20 公開日 2013-01-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element J.Biol.Chem., 2013
4KBM	Structure of the Mtb CarD/RNAP Beta subunit B1-B2 domains complex 分子名称: DNA-directed RNA polymerase subunit beta, RNA polymerase-binding transcription factor CarD 著者 Gulten, G, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC) 登録日 2013-04-23 公開日 2013-10-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1146 Å) 主引用文献 Structure of the Mtb CarD/RNAP beta-Lobes Complex Reveals the Molecular Basis of Interaction and Presents a Distinct DNA-Binding Domain for Mtb CarD. Structure, 21, 2013
7B06	TgoT_RT521 apo 分子名称: DNA polymerase 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-18 公開日 2020-12-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.349 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020

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