PDB: 45118 件ウェブページステータス検索Chemie searchBIRD

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4PGX	Structure of human DNA polymerase beta complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-05-03 公開日 2014-09-24 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.077 Å) 主引用文献 The spontaneous replication error and the mismatch discrimination mechanisms of human DNA polymerase beta. Nucleic Acids Res., 42, 2015
4KHW	Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position 分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... 著者 Clausen, A.R, Pedersen, L.C. 登録日 2013-05-01 公開日 2013-10-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.371 Å) 主引用文献 Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KAJ	X-Ray Structure of the complex of Haloalkane dehalogenase HaloTag7 with HALTS, Northeast Structural Genomics Consortium (NESG) Target OR151 分子名称: 1,2-ETHANEDIOL, GLYCEROL, MANGANESE (II) ION, ... 著者 Kuzin, A, Lew, S, Neklesa, T.K, Noblin, D, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Wang, H, Everett, J.K, Acton, T.B, Kornhaber, G, Montelione, G.T, Crews, C.M, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2013-04-22 公開日 2013-06-05 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.948 Å) 主引用文献 Northeast Structural Genomics Consortium Target OR151 To be Published
4PGQ	Structure of human DNA polymerase beta complexed with G in the template base paired with incoming non-hydrolyzable TTP 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-05-02 公開日 2014-10-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The spontaneous replication error and the mismatch discrimination mechanisms of human DNA polymerase beta. Nucleic Acids Res., 42, 2015
4PHP	Structure of human DNA polymerase beta complexed with T in the template base paired with incoming non-hydrolyzable GTP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2014-05-06 公開日 2015-05-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The spontaneous base substitution mechanisms of human DNA polymerase beta To Be Published
4PVR	Crystal structure of partially-cleaved human l-asparaginase protein in complex with l-aspartate 分子名称: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION 著者 Nomme, J, Lavie, A. 登録日 2014-03-18 公開日 2014-03-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012
4PYQ	Humanized rat apo-COMT in complex with a ureido-benzamidine 分子名称: 4-({[3-(aminomethyl)phenyl]carbamoyl}amino)benzenecarboximidamide, ACETATE ION, CHLORIDE ION, ... 著者 Ehler, A, Benz, J, Schlatter, D, Rudolph, M.G. 登録日 2014-03-27 公開日 2014-06-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 Mapping the conformational space accessible to catechol-O-methyltransferase. Acta Crystallogr.,Sect.D, 70, 2014
4Q3E	PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+ 分子名称: 1,2-ETHANEDIOL, GLYCEROL, MAGNESIUM ION, ... 著者 Quitterer, F, Beck, P, Bacher, A, Groll, M. 登録日 2014-04-11 公開日 2014-04-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Formation of Pyrroline and Tetrahydropyridine Rings in Amino Acids Catalyzed by Pyrrolysine Synthase (PylD). Angew.Chem.Int.Ed.Engl., 53, 2014
4KVJ	Crystal structure of Oryza sativa fatty acid alpha-dioxygenase with hydrogen peroxide 分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CALCIUM ION, CHLORIDE ION, ... 著者 Zhu, G, Koszelak-Rosenblum, M, Malkowski, M.G. 登録日 2013-05-22 公開日 2013-08-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Crystal structures of alpha-dioxygenase from Oryza sativa: Insights into substrate binding and activation by hydrogen peroxide. Protein Sci., 22, 2013
4PVS	Crystal structure of fully-cleaved human l-asparaginase protein in complex with l-aspartate 分子名称: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION 著者 Nomme, J, Lavie, A. 登録日 2014-03-18 公開日 2014-03-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012
4PXL	Structure of Zm ALDH2-3 (RF2C) in complex with NAD 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Cytosolic aldehyde dehydrogenase RF2C, ... 著者 Morera, S, Vigouroux, A, Kopecny, D. 登録日 2014-03-24 公開日 2015-03-18 最終更新日 2015-05-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7. Biochem.J., 468, 2015
1WZO	Crystal Structure of the HpcE from Thermus Thermophilus HB8 分子名称: GLYCEROL, HpcE, SODIUM ION, ... 著者 Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-03-08 公開日 2006-02-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structure of the HpcE from Thermus Thermophilus HB8 To be Published
4L3F	Crystal structure of Internalin K (InlK) from Listeria monocytogenes 分子名称: Internalin K, NICKEL (II) ION, SODIUM ION 著者 Neves, D. 登録日 2013-06-05 公開日 2013-08-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structure of Internalin InlK from the Human Pathogen Listeria monocytogenes. J.Mol.Biol., 425, 2013
4KYW	Restriction endonuclease DPNI in complex with two DNA molecules 分子名称: 5'-(*DC*DTP*DGP*DGP*6MAP*DTP*DCP*DCP*DAP*DG)-3', CALCIUM ION, SODIUM ION, ... 著者 Mierzejewska, K, Siwek, W, Czapinska, H, Skowronek, K, Bujnicki, J.M, Bochtler, M. 登録日 2013-05-29 公開日 2014-06-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Res., 42, 2014
4KUF	Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134 mutant with MTSEA modified Cys-165 causing stretch disorder 分子名称: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, Botulinum neurotoxin A light chain, ... 著者 Stura, E.A, Vera, L, Ptchelkine, D, Bakirci, H, Garcia, S, Dive, V. 登録日 2013-05-22 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.697 Å) 主引用文献 Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A To be Published
4QDM	Crystal structure of N-terminal mutant (V1L) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27 分子名称: Alkaline thermostable endoxylanase, GLYCEROL, MAGNESIUM ION, ... 著者 Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S. 登録日 2014-05-14 公開日 2015-05-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.964 Å) 主引用文献 Structural insights into N-terminal to C-terminal interactions and implications for thermostability of a (beta/alpha)8-triosephosphate isomerase barrel enzyme Febs J., 282, 2015
8EVY	DdlB from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase B, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
4M9B	Crystal structure of Apo Ara h 8 分子名称: Ara h 8 allergen, SODIUM ION 著者 Offermann, L.R, Hurlburt, B.K, Majorek, K.A, McBride, J.K, Maleki, S.J, Chruszcz, M. 登録日 2013-08-14 公開日 2013-11-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure and Function of the Peanut Panallergen Ara h 8. J.Biol.Chem., 288, 2013
7OLB	Crystal structure of Pab-AGOG, an 8-oxoguanine DNA glycosylase from Pyrococcus abyssi 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ... 著者 Coste, F, Goffinont, S, Flament, D, Castaing, B. 登録日 2021-05-19 公開日 2022-06-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Res., 50, 2022
4PVK	Phl p 4 I153V N158H variant, a glucose oxidase 分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, MALONATE ION, ... 著者 Zafred, D, Teufelberger, A, Keller, W, Macheroux, P. 登録日 2014-03-17 公開日 2014-04-02 最終更新日 2015-09-02 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. Febs J., 282, 2015
7OYL	Phosphoglucose isomerase of Aspergillus fumigatus in complexed with Glucose-6-phosphate 分子名称: 6-O-phosphono-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ... 著者 Raimi, O.G, Yan, K, Fang, W, van Aalten, D.M.F. 登録日 2021-06-24 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Phosphoglucose Isomerase Is Important for Aspergillus fumigatus Cell Wall Biogenesis. Mbio, 13, 2022
4Q98	Crystal structure of a fimbrilin (fimA) from Porphyromonas gingivalis W83 at 1.30 A resolution (PSI Community Target, Nakayama) 分子名称: Major fimbrial subunit protein, SODIUM ION 著者 Joint Center for Structural Genomics (JCSG) 登録日 2014-04-29 公開日 2014-06-04 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016
4QCE	Crystal structure of recombinant alkali thermostable GH10 xylanase from Bacillus sp. NG-27 分子名称: Alkaline thermostable endoxylanase, MAGNESIUM ION, SODIUM ION 著者 Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S. 登録日 2014-05-11 公開日 2015-05-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Structural insights into N-terminal to C-terminal interactions and implications for thermostability of a (beta/alpha)8-triosephosphate isomerase barrel enzyme Febs J., 282, 2015
4PVH	Phl p 4 N158H variant, a glucose dehydrogenase 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, MALONATE ION, Pollen allergen Phl p 4.0202, ... 著者 Zafred, D, Teufelberger, A, Keller, W, Macheroux, P. 登録日 2014-03-17 公開日 2014-04-02 最終更新日 2015-09-02 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. Febs J., 282, 2015
4PVQ	Crystal structure of sulfate-bound human l-asparaginase protein 分子名称: IODIDE ION, Isoaspartyl peptidase/L-asparaginase, SODIUM ION, ... 著者 Nomme, J, Lavie, A. 登録日 2014-03-18 公開日 2014-03-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012

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