PDB: 473 件ウェブページステータス検索Chemie searchBIRD

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8C6J	Human spliceosomal PM5 C* complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... 著者 Dybkov, O, Kastner, B, Luehrmann, R. 登録日 2023-01-12 公開日 2023-07-12 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Regulation of 3' splice site selection after step 1 of splicing by spliceosomal C* proteins. Sci Adv, 9, 2023
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-31 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
6JI2	Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex 分子名称: Archaeal ribosomal stalk protein aP1, Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Maruyama, K, Imai, H, Kawamura, M, Ishino, S, Ishino, Y, Ito, K, Uchiumi, T. 登録日 2019-02-20 公開日 2019-11-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations. Sci Rep, 9, 2019
8CAS	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2023-01-24 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
6K71	eIF2 - eIF2B complex 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Kashiwagi, K, Yokoyama, T, Ito, T. 登録日 2019-06-05 公開日 2019-07-10 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural basis for eIF2B inhibition in integrated stress response. Science, 364, 2019
4G5G	ef-tu (Escherichia coli) complexed with nvp-ldu796 分子名称: Elongation factor Tu 1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Palestrant, D. 登録日 2012-07-17 公開日 2012-12-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Antibiotic optimization and chemical structure stabilization of thiomuracin A. J.Med.Chem., 55, 2012
4FWT	Complex structure of viral RNA polymerase form III 分子名称: CALCIUM ION, Elongation factor Ts, Elongation factor Tu, ... 著者 Takeshita, D, Tomita, K. 登録日 2012-07-02 公開日 2012-08-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Mechanism for template-independent terminal adenylation activity of Q beta replicase Structure, 20, 2012
6K72	eIF2(aP) - eIF2B complex 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Kashiwagi, K, Yokoyama, T, Ito, T. 登録日 2019-06-05 公開日 2019-07-10 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structural basis for eIF2B inhibition in integrated stress response. Science, 364, 2019
4FN5	ELONGATION FACTOR G 1 (PSEUDOMONAS AERUGINOSA) IN COMPLEX WITH Argyrin B 分子名称: Argyrin B, Elongation factor G 1 著者 Kirby, C.A, Palestrant, D. 登録日 2012-06-19 公開日 2012-09-26 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Identification of elongation factor g as the conserved cellular target of argyrin B. Plos One, 7, 2012
1U2R	Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Jorgensen, R, Yates, S.P, Nilsson, J, Prentice, G.A, Teal, D.J, Merrill, A.R, Andersen, G.R. 登録日 2004-07-20 公開日 2004-09-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae J.Biol.Chem., 279, 2004
3CB4	The Crystal Structure of LepA 分子名称: GTP-binding protein lepA 著者 Evans, R.N, Blaha, G, Bailey, S, Steitz, T.A. 登録日 2008-02-21 公開日 2008-03-18 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The structure of LepA, the ribosomal back translocase. Proc.Natl.Acad.Sci.Usa, 105, 2008
6U45	Crystal structure of Methanoperedens nitroreducens elongation factor 2 bound to GMPPCP and magnesium 分子名称: CHLORIDE ION, Elongation factor 2, MAGNESIUM ION, ... 著者 Fenwick, M.K, Ealick, S.E. 登録日 2019-08-22 公開日 2020-03-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural basis of elongation factor 2 switching Curr Res Struct Biol, 2, 2020
6U44	Crystal structure of Methanoperedens nitroreducens elongation factor 2 H595N bound to GMPPCP and magnesium (monoclinic crystal form) 分子名称: CHLORIDE ION, Elongation factor 2, MAGNESIUM ION, ... 著者 Fenwick, M.K, Ealick, S.E. 登録日 2019-08-22 公開日 2020-03-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis of elongation factor 2 switching Curr Res Struct Biol, 2, 2020
7CSL	Crystal structure of the archaeal EF1A-EF1B complex 分子名称: Elongation factor 1-alpha, Elongation factor 1-beta 著者 Suzuki, T, Ito, K, Miyoshi, T, Murakami, R, Uchiumi, T. 登録日 2020-08-15 公開日 2021-06-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into the Switching Off of the Interaction between the Archaeal Ribosomal Stalk and aEF1A by Nucleotide Exchange Factor aEF1B. J.Mol.Biol., 433, 2021
7CDW	Crystal Structure of Mycobacterium Tuberculosis Elongation Factor G1 分子名称: Elongation factor G, GUANOSINE-5'-DIPHOSPHATE 著者 Gao, X, Cui, S. 登録日 2020-06-20 公開日 2021-09-22 最終更新日 2022-02-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal Structure of Mycobacterium tuberculosis Elongation Factor G1. Front Mol Biosci, 8, 2021
6U43	Crystal structure of Methanoperedens nitroreducens elongation factor 2 H595N bound to GMPPCP and magnesium (triclinic crystal form) 分子名称: CHLORIDE ION, Elongation factor 2, MAGNESIUM ION, ... 著者 Fenwick, M.K, Ealick, S.E. 登録日 2019-08-22 公開日 2020-03-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural basis of elongation factor 2 switching Curr Res Struct Biol, 2, 2020
7D43	eIF2B-eIF2(aP), aPg complex 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Kashiwagi, K, Ito, T. 登録日 2020-09-22 公開日 2020-12-09 最終更新日 2021-01-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B. Mol.Cell, 81, 2021
6UCQ	Crystal structure of the Thermus thermophilus 70S ribosome recycling complex 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Zhou, D, Tanzawa, T, Gagnon, M.G, Lin, J. 登録日 2019-09-17 公開日 2019-12-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis for ribosome recycling by RRF and tRNA. Nat.Struct.Mol.Biol., 27, 2020
8B6Z	CryoEM Structure of Extended eEF1A bound to the Ribosome in the Classical Pre State 分子名称: 28S ribosomal RNA, Elongation factor 1-alpha 2 著者 Gemmer, M, Fedry, J.M.M, Forster, F.G. 登録日 2022-09-27 公開日 2022-12-07 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Visualization of translation and protein biogenesis at the ER membrane. Nature, 614, 2023
1TTT	Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complex 分子名称: MAGNESIUM ION, OF ELONGATION FACTOR TU (EF-TU), PHENYLALANINE, ... 著者 Nissen, P, Kjeldgaard, M, Thirup, S, Polekhina, G, Reshetnikova, L, Clark, B.F.C, Nyborg, J. 登録日 1995-11-16 公開日 1996-12-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science, 270, 1995
1TUI	INTACT ELONGATION FACTOR TU IN COMPLEX WITH GDP 分子名称: ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION 著者 Polekhina, G, Thirup, S, Kjeldgaard, M, Nissen, P, Lippmann, C, Nyborg, J. 登録日 1996-05-23 公開日 1997-06-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Helix unwinding in the effector region of elongation factor EF-Tu-GDP. Structure, 4, 1996
7ZKI	Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex 分子名称: MAGNESIUM ION, METHIONINE, Met-tRNAiMet, ... 著者 Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. 登録日 2022-04-13 公開日 2022-07-20 最終更新日 2022-08-31 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
7ZJW	Rabbit 80S ribosome as it decodes the Sec-UGA codon 分子名称: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ... 著者 Hilal, T, Simonovic, M, Spahn, C.M.T. 登録日 2022-04-12 公開日 2022-10-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science, 376, 2022
7DVQ	Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine, Armadillo repeat-containing protein 7, ... 著者 Bai, R, Wan, R, Wang, L, Xu, K, Zhang, Q, Lei, J, Shi, Y. 登録日 2021-01-14 公開日 2021-03-31 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Structure of the activated human minor spliceosome. Science, 371, 2021
8BSI	Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-25 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023

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