Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4AV3
DownloadVisualize
BU of 4av3 by Molmil
Crystal structure of Thermotoga Maritima sodium pumping membrane integral pyrophosphatase with metal ions in active site
分子名称: CALCIUM ION, K(+)-STIMULATED PYROPHOSPHATE-ENERGIZED SODIUM PUMP, MAGNESIUM ION
著者Kajander, T, Kogan, K, Kellosalo, J, Pokharel, K, Goldman, A.
登録日2012-05-23
公開日2012-08-08
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The Structure and Catalytic Cycle of a Sodium-Pumping Pyrophosphatase.
Science, 337, 2012
7KHS
DownloadVisualize
BU of 7khs by Molmil
OgOGA IN COMPLEX WITH LIGAND 55
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, N-(5-{[(5S)-7-(5-methylimidazo[1,2-a]pyrimidin-7-yl)-2,7-diazaspiro[4.4]nonan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide, ...
著者Shaffer, P.L.
登録日2020-10-21
公開日2020-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Diazaspirononane Nonsaccharide Inhibitors of O-GlcNAcase (OGA) for the Treatment of Neurodegenerative Disorders.
J.Med.Chem., 63, 2020
7KHV
DownloadVisualize
BU of 7khv by Molmil
CpOGA IN COMPLEX WITH LIGAND 54
分子名称: CALCIUM ION, CHLORIDE ION, N-(5-{[6-(5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,6-diazaspiro[3.4]octan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide, ...
著者Shaffer, P.L.
登録日2020-10-22
公開日2020-12-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Diazaspirononane Nonsaccharide Inhibitors of O-GlcNAcase (OGA) for the Treatment of Neurodegenerative Disorders.
J.Med.Chem., 63, 2020
7YXI
DownloadVisualize
BU of 7yxi by Molmil
Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and N-oxalylglycine (NOG)
分子名称: 1,2-ETHANEDIOL, GH14974p, MANGANESE (II) ION, ...
著者Chowdhury, R, Schofield, C.J.
登録日2022-02-16
公開日2022-04-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Conservation of the unusual dimeric JmjC fold of JMJD7 from Drosophila melanogaster to humans.
Sci Rep, 12, 2022
1GJW
DownloadVisualize
BU of 1gjw by Molmil
Thermotoga maritima maltosyltransferase complex with maltose
分子名称: MALTODEXTRIN GLYCOSYLTRANSFERASE, PHOSPHATE ION, alpha-D-glucopyranose, ...
著者Roujeinikova, A, Raasch, C, Burke, J, Baker, P.J, Liebl, W, Rice, D.W.
登録日2001-08-03
公開日2001-09-06
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Crystal Structure of Thermotoga Maritima Maltosyltransferase and its Implications for the Molecular Basis of the Novel Transfer Specificity
J.Mol.Biol., 312, 2001
6DZY
DownloadVisualize
BU of 6dzy by Molmil
Cryo-EM structure of the ts2-active human serotonin transporter in complex with 15B8 Fab and 8B6 ScFv bound to ibogaine
分子名称: (5beta)-12-methoxyibogamine, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
著者Coleman, J.A, Yang, D, Gouaux, E.
登録日2018-07-05
公開日2019-04-24
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
6DZV
DownloadVisualize
BU of 6dzv by Molmil
Wild type human serotonin transporter in complex with 15B8 Fab bound to ibogaine in occluded conformation
分子名称: (5beta)-12-methoxyibogamine, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
著者Coleman, J.A, Yang, D, Gouaux, E.
登録日2018-07-05
公開日2019-04-24
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
6DZZ
DownloadVisualize
BU of 6dzz by Molmil
Cryo-EM Structure of the wild-type human serotonin transporter in complex with ibogaine and 15B8 Fab in the inward conformation
分子名称: (5beta)-12-methoxyibogamine, 15B8 antibody heavy chain, 15B8 antibody light chain, ...
著者Yang, D, Coleman, J.A, Gouaux, E.
登録日2018-07-05
公開日2019-04-24
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transport.
Nature, 569, 2019
4V4D
DownloadVisualize
BU of 4v4d by Molmil
Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with pyrogallol
分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, BENZENE-1,2,3-TRIOL, CALCIUM ION, ...
著者Messerschmidt, A, Niessen, H, Abt, D, Einsle, O, Schink, B, Kroneck, P.M.H.
登録日2004-06-02
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of pyrogallol-phloroglucinol transhydroxylase, an Mo enzyme capable of intermolecular hydroxyl transfer between phenols
PROC.NATL.ACAD.SCI.USA, 101, 2004
1UYP
DownloadVisualize
BU of 1uyp by Molmil
The three-dimensional structure of beta-fructosidase (invertase) from Thermotoga maritima
分子名称: BETA-FRUCTOSIDASE, CITRIC ACID, GLYCEROL, ...
著者Alberto, F, Bignon, C, Sulzenbacher, G, Henrissat, B, Czjzek, M.
登録日2004-03-02
公開日2004-03-22
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The three-dimensional structure of invertase (beta-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases.
J. Biol. Chem., 279, 2004
1D21
DownloadVisualize
BU of 1d21 by Molmil
BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON
分子名称: DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3'), NOGALAMYCIN
著者Gao, Y.-G, Liaw, Y.-C, Robinson, H, Wang, A.H.-J.
登録日1990-08-08
公開日1991-07-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison.
Biochemistry, 29, 1990
1D22
DownloadVisualize
BU of 1d22 by Molmil
BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON
分子名称: DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3'), U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN
著者Gao, Y.-G, Liaw, Y.-C, Robinson, H, Wang, A.H.-J.
登録日1990-08-08
公開日1991-07-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison.
Biochemistry, 29, 1990
5W1A
DownloadVisualize
BU of 5w1a by Molmil
The first X-ray crystal structure of an insect muscle myosin. Drosophila melanogaster, skeletal muscle myosin II, an embryonic isoform, subfragment-1
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, GLYCEROL, ...
著者Caldwell, J.T, Bernstein, S.I, Huxford, T.
登録日2017-06-02
公開日2018-06-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.227 Å)
主引用文献X-ray crystallographic and molecular dynamic analyses of Drosophila melanogaster embryonic muscle myosin define domains responsible for isoform-specific properties.
J.Mol.Biol., 2019
5TOW
DownloadVisualize
BU of 5tow by Molmil
Crystal structure of the inactive form of S-adenosyl-L-homocysteine hydrolase from Thermotoga maritima in ternary complex with NADH and Adenosine
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADENOSINE, ...
著者Czyrko, J, Brzezinski, K.
登録日2016-10-19
公開日2017-07-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive form - Biochemical and structural studies.
Int. J. Biol. Macromol., 104, 2017
5TOV
DownloadVisualize
BU of 5tov by Molmil
Crystal structure of the inactive form of S-adenosyl-L-homocysteine hydrolase from Thermotoga maritima in binary complex with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Adenosylhomocysteinase, CHLORIDE ION
著者Czyrko, J, Brzezinski, K.
登録日2016-10-19
公開日2017-07-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive form - Biochemical and structural studies.
Int. J. Biol. Macromol., 104, 2017
1B3B
DownloadVisualize
BU of 1b3b by Molmil
THERMOTOGA MARITIMA GLUTAMATE DEHYDROGENASE MUTANT N97D, G376K
分子名称: PROTEIN (GLUTAMATE DEHYDROGENASE)
著者Knapp, S, Lebbink, J.H.G, Van Der Oost, J, Devos, W.M, Rice, D, Ladenstein, R.
登録日1998-12-07
公開日1999-12-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. Introduction of a six-residue ion-pair network in the hinge region.
J.Mol.Biol., 280, 1998
7XA1
DownloadVisualize
BU of 7xa1 by Molmil
Thermotoga maritima ferritin variant-Tm-E(S111Y)
分子名称: FE (III) ION, Ferritin
著者Yu, L, Guanghua, Z.
登録日2022-03-16
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Thermotoga maritima ferritin variant-Tm-E(S111Y)
To Be Published
7X9Z
DownloadVisualize
BU of 7x9z by Molmil
Thermotoga maritima ferritin variant-Tm-E(G40E) with Co
分子名称: COBALT (II) ION, Ferritin
著者Yu, L, Guanghua, Z.
登録日2022-03-16
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Thermotoga maritima ferritin variant-Tm-E(G40E) with Co
To Be Published
7XA0
DownloadVisualize
BU of 7xa0 by Molmil
Thermotoga maritima ferritin variant-Tm-E(S111F)
分子名称: Ferritin
著者Yu, L, Guanghua, Z.
登録日2022-03-16
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Thermotoga maritima ferritin variant-Tm-E(S111F)
To Be Published
2P3N
DownloadVisualize
BU of 2p3n by Molmil
Thermotoga maritima IMPase TM1415
分子名称: Inositol-1-monophosphatase, MAGNESIUM ION
著者Stieglitz, K.A, Roberts, M.F, Li, W, Stec, B.
登録日2007-03-09
公開日2007-04-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the tetrameric inositol 1-phosphate phosphatase (TM1415) from the hyperthermophile, Thermotoga maritima.
Febs J., 274, 2007
2P3V
DownloadVisualize
BU of 2p3v by Molmil
Thermotoga maritima IMPase TM1415
分子名称: Inositol-1-monophosphatase, S,R MESO-TARTARIC ACID
著者Stieglitz, K.A, Roberts, M.F, Li, W, Stec, B.
登録日2007-03-09
公開日2007-04-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the tetrameric inositol 1-phosphate phosphatase (TM1415) from the hyperthermophile, Thermotoga maritima.
Febs J., 274, 2007
258D
DownloadVisualize
BU of 258d by Molmil
FACTORS AFFECTING SEQUENCE SELECTIVITY ON NOGALAMYCIN INTERCALATION: THE CRYSTAL STRUCTURE OF D(TGTACA)-NOGALAMYCIN
分子名称: ACETATE ION, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3'), NOGALAMYCIN, ...
著者Smith, C.K, Brannigan, J.A, Moore, M.H.
登録日1996-05-12
公開日1996-06-20
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Factors affecting DNA sequence selectivity of nogalamycin intercalation: the crystal structure of d(TGTACA)2-nogalamycin2.
J.Mol.Biol., 263, 1996
1QCH
DownloadVisualize
BU of 1qch by Molmil
STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 COMPLEX DETERMINED BY NMR AND MOLECULAR DYNAMICS SIMULATIONS IN SOLUTION
分子名称: 5'-D(*AP*TP*GP*CP*AP*T)-3', NOGALAMYCIN, SODIUM ION
著者Williams, H.E.L, Searle, M.S.
登録日1999-05-05
公開日1999-08-02
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution.
J.Mol.Biol., 290, 1999
245D
DownloadVisualize
BU of 245d by Molmil
DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE
分子名称: DNA (5'-D(*TP*GP*AP*TP*CP*A)-3'), NOGALAMYCIN
著者Schuerman, G.S, Smith, C.K, Turkenburg, J.P, Dettmar, A.N, Van Meervelt, L, Moore, M.H.
登録日1996-01-12
公開日1996-02-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献DNA-drug refinement: a comparison of the programs NUCLSQ, PROLSQ, SHELXL93 and X-PLOR, using the low-temperature d(TGATCA)-nogalamycin structure.
Acta Crystallogr.,Sect.D, 52, 1996
224D
DownloadVisualize
BU of 224d by Molmil
DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE
分子名称: DNA (5'-D(*TP*GP*AP*TP*CP*A)-3'), NOGALAMYCIN
著者Schuerman, G.S, Smith, C.K, Turkenburg, J.P, Dettmar, A.N, Van Meervelt, L, Moore, M.H.
登録日1995-08-01
公開日1995-11-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献DNA-drug refinement: a comparison of the programs NUCLSQ, PROLSQ, SHELXL93 and X-PLOR, using the low-temperature d(TGATCA)-nogalamycin structure.
Acta Crystallogr.,Sect.D, 52, 1996

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon