PDB: 42091 件ウェブページステータス検索Chemie searchBIRD

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9F09	Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Complex with 2-deoxyribose, 7-Bromo-1H-imidazo[4,5-b]pyridine and 2'-deoxycytidine 分子名称: 2'-DEOXYCYTIDINE, 2-deoxy-beta-D-erythro-pentofuranose, 7-bromanyl-3~{H}-imidazo[4,5-b]pyridine, ... 著者 Ascham, A, Salihovic, A, Burley, G, Grogan, G. 登録日 2024-04-15 公開日 2024-12-04 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Gram-scale enzymatic synthesis of 2'-deoxyribonucleoside analogues using nucleoside transglycosylase-2. Chem Sci, 15, 2024
9F08	Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Covalent complex with 2-deoxyribose. 分子名称: 2-deoxy-beta-D-erythro-pentofuranose, Nucleoside deoxyribosyltransferase 著者 Ascham, A, Salihovic, A, Burley, G, Grogan, G. 登録日 2024-04-15 公開日 2024-12-04 実験手法 X-RAY DIFFRACTION (2.371 Å) 主引用文献 Gram-scale enzymatic synthesis of 2'-deoxyribonucleoside analogues using nucleoside transglycosylase-2. Chem Sci, 15, 2024
3WX8	Purification, characterization and structure of nucleoside diphosphate kinase from Drosophila S2 cells 分子名称: Nucleoside diphosphate kinase 著者 Qian, L. 登録日 2014-07-25 公開日 2015-06-10 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Purification, characterization and structure of nucleoside diphosphate kinase from Drosophila melanogaster Protein Expr.Purif., 103, 2014
3VGU	E134A mutant nucleoside diphosphate kinase derived from Halomonas sp. 593 分子名称: Nucleoside diphosphate kinase 著者 Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R. 登録日 2011-08-21 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci., 21, 2012
3VGV	E134A mutant nucleoside diphosphate kinase derived from Halomonas sp. 593 分子名称: Nucleoside diphosphate kinase 著者 Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R. 登録日 2011-08-21 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci., 21, 2012
3VGS	Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593 分子名称: Nucleoside diphosphate kinase 著者 Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R. 登録日 2011-08-20 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci., 21, 2012
3VGT	Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593 分子名称: Nucleoside diphosphate kinase 著者 Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R. 登録日 2011-08-21 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci., 21, 2012
3Q83	Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase 分子名称: Nucleoside diphosphate kinase 著者 Srivastava, S.K, Rajasree, K, Gopal, B. 登録日 2011-01-06 公開日 2011-07-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 1814, 2011
4KPC	Crystal structure of the nucleoside diphosphate kinase b from Leishmania braziliensis 分子名称: Nucleoside diphosphate kinase b, PHOSPHATE ION 著者 Vieira, P.S, Giuseppe, P.O, Santos, C.R, Cunha, E.M.F, de Oliveira, A.H.C, Murakami, M.T. 登録日 2013-05-13 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis. Bmc Struct.Biol., 15, 2015
5DZ2	Geosmin synthase from Streptomyces coelicolor N-terminal domain complexed with three Mg2+ ions and alendronic acid 分子名称: ALENDRONATE, Germacradienol/geosmin synthase, MAGNESIUM ION 著者 Harris, G.G, Lombardi, P.M, Pemberton, T.A, Matsui, T, Weiss, T.M, Cole, K.E, Koksal, M, Murphy, F.V, Vedula, L.S, Chou, W.K.W, Cane, D.E, Christianson, D.W. 登録日 2015-09-25 公開日 2015-12-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.111 Å) 主引用文献 Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence. Biochemistry, 54, 2015
5GO1	Structural, Functional characterization and discovery of novel inhibitors of Leishmania amazonensis Nucleoside Diphosphatase Kinase (NDK) 分子名称: Nucleoside diphosphate kinase 著者 Mishra, A.K, Agnihotri, P, Singh, S.P, Pratap, J.V. 登録日 2016-07-26 公開日 2017-07-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Discovery of novel inhibitors for Leishmania nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization. J. Comput. Aided Mol. Des., 31, 2017
5CAA	Structure of Leishmania nucleoside diphosphate kinase mutant P100S/del5-Cterm 分子名称: Nucleoside diphosphate kinase 著者 Vieira, P.S, de Giuseppe, P.O, de Oliveira, A.H.C, Murakami, M.T. 登録日 2015-06-29 公開日 2015-10-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The role of the C-terminus and Kpn loop in the quaternary structure stability of nucleoside diphosphate kinase from Leishmania parasites. J.Struct.Biol., 192, 2015
5CAB	Structure of Leishmania nucleoside diphostate kinase mutant Del5-Cterm 分子名称: Nucleoside diphosphate kinase, SULFATE ION 著者 Vieira, P.S, de Giuseppe, P.O, de Oliveira, A.H.C, Murakami, M.T. 登録日 2015-06-29 公開日 2015-10-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.953 Å) 主引用文献 The role of the C-terminus and Kpn loop in the quaternary structure stability of nucleoside diphosphate kinase from Leishmania parasites. J.Struct.Biol., 192, 2015
5C7P	Structure of Leishmania nucleoside diphostate kinase mutant P95S 分子名称: Nucleoside diphosphate kinase 著者 Vieira, P.S, de Giuseppe, P.O, de Oliveira, A.H.C, Murakami, M.T. 登録日 2015-06-24 公開日 2015-10-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.144 Å) 主引用文献 The role of the C-terminus and Kpn loop in the quaternary structure stability of nucleoside diphosphate kinase from Leishmania parasites. J.Struct.Biol., 192, 2015
1NSP	MECHANISM OF PHOSPHATE TRANSFER BY NUCLEOSIDE DIPHOSPHATE KINASE: X-RAY STRUCTURES OF A PHOSPHO-HISTIDINE INTERMEDIATE OF THE ENZYMES FROM DROSOPHILA AND DICTYOSTELIUM 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Janin, J, Morera, S, Chiadmi, M, Lebras, G, Lascu, I. 登録日 1995-04-18 公開日 1995-07-10 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mechanism of phosphate transfer by nucleoside diphosphate kinase: X-ray structures of the phosphohistidine intermediate of the enzymes from Drosophila and Dictyostelium. Biochemistry, 34, 1995
1PKU	Crystal Structure of Nucleoside Diphosphate Kinase from Rice 分子名称: Nucleoside Diphosphate Kinase I 著者 Huang, J.-Y, Chang, C.-Y, Chang, T, Chen, C.-J. 登録日 2003-06-06 公開日 2005-02-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.). J.Struct.Biol., 150, 2005
5X7V	Crystal structure of Nucleosome assembly protein S (PfNapS) from Plasmodium falciparum 分子名称: Nucleosome assembly protein 著者 Gill, J, Yogavel, M, Sharma, A. 登録日 2017-02-27 公開日 2017-03-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.802 Å) 主引用文献 Structure, localization and histone binding properties of nuclear-associated nucleosome assembly protein from Plasmodium falciparum. Malar. J., 9, 2010
5X00	Nucleoside Diphosphate Kinase from Vibrio cholerae is a Thermolabile Type II tetramer 分子名称: Nucleoside diphosphate kinase 著者 Agnihotri, P, Mishra, A.K, Pratap, J.V. 登録日 2017-01-19 公開日 2018-01-31 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.06 Å) 主引用文献 Nucleoside Diphosphate Kinase from Vibrio cholerae is a Thermolabile Type II tetramer. To Be Published
1HHQ	Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION 著者 Schneider, B, Babolat, M, Xu, Y.W, Janin, J, Veron, M, Deville-Bonne, D. 登録日 2000-12-26 公開日 2001-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mechanism of Phosphoryl Transfer by Nucleoside Diphosphate Kinase Ph-Dependence and Role of Active Site Lys16 and Tyr56 Residues Eur.J.Biochem., 268, 2001
1QMT	Recombinant Human Eosinophil Cationic Protein 分子名称: EOSINOPHIL CATIONIC PROTEIN 著者 Boix, E, Leonidas, D.D, Acharya, K.R. 登録日 1999-10-06 公開日 2000-02-04 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The Crystal Structure of Eosinophil Cationic Protein at 2.4 A Resolution Biochemistry, 38, 1999
3NGR	Crystal structure of Leishmania nucleoside diphosphate kinase b with unordered nucleotide-binding loop. 分子名称: Nucleoside diphosphate kinase, PHOSPHATE ION 著者 Trindade, D.M, Sousa, T.A.C.B, Tonoli, C.C.C, Santos, C.R, Arni, R.K, Ward, R.J, Oliveira, A.H.C, Murakami, M.T. 登録日 2010-06-13 公開日 2011-04-27 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding. Mol Biosyst, 7, 2011
1HI3	Eosinophil-derived Neurotoxin (EDN) - Adenosine 2'-5'-Diphosphate Complex 分子名称: ADENOSINE-2'-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN 著者 Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R. 登録日 2001-01-02 公開日 2001-05-31 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors J.Biol.Chem., 276, 2001
1HI4	Eosinophil-derived Neurotoxin (EDN) - Adenosien-3'-5'-Diphosphate Complex 分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN 著者 Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R. 登録日 2001-01-02 公開日 2001-05-31 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors J.Biol.Chem., 276, 2001
1HI5	Eosinophil-derived Neurotoxin (EDN) - Adenosine-5'-Diphosphate Complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, EOSINOPHIL-DERIVED NEUROTOXIN 著者 Leonidas, D.D, Boix, E, Prill, R, Suzuki, M, Turton, R, Minson, K, Swaminathan, G.J, Youle, R.J, Acharya, K.R. 登録日 2001-01-02 公開日 2001-05-31 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mapping the Ribonucleolytic Active Site of Eosinophil-Derived Neurotoxin (Edn): High Resolution Crystal Structures of Edn Complexes with Adenylic Nucleotide Inhibitors J.Biol.Chem., 276, 2001
2KB5	Solution NMR Structure of Eosinophil Cationic Protein/RNase 3 分子名称: Eosinophil cationic protein 著者 Rico, M, Bruix, M, Laurents, D.V, Santoro, J, Jimenez, M, Boix, E, Moussaoui, M, Nogues, M. 登録日 2008-11-20 公開日 2009-06-23 最終更新日 2024-11-06 実験手法 SOLUTION NMR 主引用文献 The (1)H, (13)C, (15)N resonance assignment, solution structure, and residue level stability of eosinophil cationic protein/RNase 3 determined by NMR spectroscopy Biopolymers, 91, 2009

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