PDB: 45118 件ウェブページステータス検索Chemie searchBIRD

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5C7G	Crystal Structure of the b1 Domain of Human Neuropilin-1 in complex with a bicine molecule 分子名称: BICINE, Neuropilin-1, SODIUM ION 著者 Didierjean, C, Jelsch, C. 登録日 2015-06-24 公開日 2016-07-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Design, synthesis and biological evaluation of new peptidomimetic compounds targeting NRP-1 receptor TO BE PUBLISHED To Be Published
7W3E	Bovine cytochrome c oxidese in CN-bound fully reduced state at 50 K 分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... 著者 Tsukihara, T, Shimada, A. 登録日 2021-11-25 公開日 2022-12-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons. J.Biol.Chem., 299, 2023
3L1O	Crystal structure of monoclonal antibody MN423 Fab fragment with free combining site, crystallized in the presence of zinc 分子名称: IMIDAZOLE, MONOCLONAL ANTIBODY FAB FRAGMENT MN423 H CHAIN, MONOCLONAL ANTIBODY FAB FRAGMENT MN423 L CHAIN, ... 著者 Skrabana, R, Sevcik, J. 登録日 2009-12-14 公開日 2010-03-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Monoclonal antibody MN423 as a stable mold facilitates structure determination of disordered tau protein J.Struct.Biol., 171, 2010
231D	STRUCTURE OF A DNA-PORPHYRIN COMPLEX 分子名称: CU(II)MESO(4-N-TETRAMETHYLPYRIDYL)PORPHYRIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), SODIUM ION 著者 Lipscomb, L.A, Zhou, F.X, Presnell, S.R, Woo, R.J, Peek, M.E, Plaskon, R.R, Williams, L.D. 登録日 1995-08-25 公開日 1996-03-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of DNA-porphyrin complex. Biochemistry, 35, 1996
4A3R	Crystal structure of Enolase from Bacillus subtilis. 分子名称: CITRIC ACID, ENOLASE, SODIUM ION 著者 Newman, J.A, Hewitt, L, Rodrigues, C, Solovyova, A.S, Harwood, C.R, Lewis, R.J. 登録日 2011-10-04 公開日 2012-08-15 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Dissection of the Network of Interactions that Links RNA Processing with Glycolysis in the Bacillus Subtilis Degradosome. J.Mol.Biol., 416, 2012
3WH8	Crystal structure of GH1 beta-glucosidase Td2F2 isofagomine complex 分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, GLYCEROL, ... 著者 Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K. 登録日 2013-08-21 公開日 2014-09-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2. Febs J., 283, 2016
6GL6	apo [FeFe]-hydrogenase HydA1 from Chlamydomonas reinhardtii, variant C377H 分子名称: CHLORIDE ION, Fe-hydrogenase, IRON/SULFUR CLUSTER, ... 著者 Kertess, L, Happe, T, Hofmann, E. 登録日 2018-05-23 公開日 2018-12-26 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 His-Ligation to the [4Fe-4S] Subcluster Tunes the Catalytic Bias of [FeFe] Hydrogenase. J.Am.Chem.Soc., 141, 2019
6H7J	ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80 分子名称: Beta-1 adrenergic receptor, Camelid antibody fragment Nb80, HEGA-10, ... 著者 Warne, T, Edwards, P.C, Dore, A.S, Leslie, A.G.W, Tate, C.G. 登録日 2018-07-31 公開日 2018-10-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Molecular basis for high-affinity agonist binding in GPCRs. Science, 364, 2019
5CVP	Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 571 分子名称: 1-(4-chlorophenyl)-N-methylmethanesulfonamide, ACETATE ION, CADMIUM ION, ... 著者 Ngo, H.P.T, Kang, L.W. 登録日 2015-07-27 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 571 To Be Published
5DB6	Structure of human DNA polymerase beta Host-Guest complex with the N7MG base paired with a dC 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*(FMG)P*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2015-08-20 公開日 2015-11-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.83 Å) 主引用文献 N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA. J.Am.Chem.Soc., 137, 2015
5DBC	Structure of human DNA polymerase beta Host-Guest complex with the dG base paired with a dG 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*GP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2015-08-21 公開日 2015-11-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.402 Å) 主引用文献 N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA. J.Am.Chem.Soc., 137, 2015
5BNK	Crystal structure of T75C mutant of Triosephosphate isomerase from Plasmodium falciparum 分子名称: 1,2-ETHANEDIOL, SODIUM ION, Triosephosphate isomerase 著者 Bandyopadhyay, D, Murthy, M.R.N, Balaram, H, Balaram, P. 登録日 2015-05-26 公開日 2015-07-29 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Probing the role of highly conserved residues in triosephosphate isomerase - analysis of site specific mutants at positions 64 and 75 in the Plasmodial enzyme Febs J., 282, 2015
5B1B	Bovine heart cytochrome c oxidase in the fully reduced state at 1.6 angstrom resolution 分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... 著者 Yano, N, Muramoto, K, Shimada, A, Takemura, S, Baba, J, Fujisawa, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Tsukihara, T, Yoshikawa, S. 登録日 2015-12-01 公開日 2016-09-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The Mg2+-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle. J.Biol.Chem., 291, 2016
5BR7	Structure of UDP-galactopyranose mutase from Corynebacterium diphtheriae in complex with citrate ion 分子名称: 1,2-ETHANEDIOL, CITRATE ANION, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Wangkanont, K, Kiessling, L.L, Forest, K.T. 登録日 2015-05-29 公開日 2016-06-01 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Conformational Control of UDP-Galactopyranose Mutase Inhibition. Biochemistry, 56, 2017
5AM9	Crystal structure of the Angiotensin-1 converting enzyme N-domain in complex with amyloid-beta 10-16 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ANGIOTENSIN-CONVERTING ENZYME, CALCIUM ION, ... 著者 Masuyer, G, Larmuth, K.M, Douglas, R.G, Sturrock, E.D, Acharya, K.R. 登録日 2015-03-10 公開日 2016-01-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Kinetic and Structural Characterisation of Amyloid-Beta Metabolism by Human Angiotensin-1- Converting Enzyme (Ace) FEBS J., 283, 2016
4AGA	Hofmeister effects of ionic liquids in protein crystallization: direct and water-mediated interactions 分子名称: ACETATE ION, CHLORIDE ION, CHOLINE ION, ... 著者 Mukhopadhyay, A, Carvalho, A.L, Romao, M.J. 登録日 2012-01-25 公開日 2012-07-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Hofmeister Effects of Ionic Liquids in Protein Crystallization: Direct and Water-Mediated Interactions Cryst.Eng.Comm., 14, 2012
1QCH	STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 COMPLEX DETERMINED BY NMR AND MOLECULAR DYNAMICS SIMULATIONS IN SOLUTION 分子名称: 5'-D(*AP*TP*GP*CP*AP*T)-3', NOGALAMYCIN, SODIUM ION 著者 Williams, H.E.L, Searle, M.S. 登録日 1999-05-05 公開日 1999-08-02 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution. J.Mol.Biol., 290, 1999
7X5P	Truncated VhChiP (1-19aa) in complex with doxycycline 分子名称: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Chitoporin, ... 著者 Sanram, S, Robinson, C.R, Aunkham, A, Suginta, W. 登録日 2022-03-05 公開日 2023-03-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structure and function of truncated VhChiP To Be Published
5DB7	Structure of human DNA polymerase beta Host-Guest complex with the N7MG base paired with a dT 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*(FMG)P*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2015-08-21 公開日 2015-11-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.209 Å) 主引用文献 N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA. J.Am.Chem.Soc., 137, 2015
4AQP	The structure of the AXH domain of ataxin-1. 分子名称: ATAXIN-1, DI(HYDROXYETHYL)ETHER, SODIUM ION 著者 Rees, M, Chen, Y.W, de Chiara, C, Pastore, A. 登録日 2012-04-19 公開日 2013-03-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.452 Å) 主引用文献 Self-Assembly and Conformational Heterogeneity of the Axh Domain of Ataxin-1: An Unusual Example of a Chameleon Fold Biophys.J., 104, 2013
4ZUM	Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a trifluoromethylketone inhibitor 分子名称: 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptane-2,2-diol, Acetylpolyamine aminohydrolase, GLYCEROL, ... 著者 Decroos, C, Christianson, D.W. 登録日 2015-05-17 公開日 2015-07-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase. Biochemistry, 54, 2015
4ALO	STRUCTURE AND PROPERTIES OF H1 CRUSTACYANIN FROM LOBSTER HOMARUS AMERICANUS 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, H1 APOCRUSTACYANIN, SODIUM ION, ... 著者 Ferrari, M, Folli, C, Pincolini, E, Mcclintock, T.S, Roessle, M, Berni, R, Cianci, M. 登録日 2012-03-05 公開日 2012-08-08 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Structural Characterization of Recombinant Crustacyanin Subunits from the Lobster Homarus Americanus. Acta Crystallogr.,Sect.F, 68, 2012
3X3X	Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine 分子名称: 2-PHENYL-ETHANOL, COPPER (II) ION, GLYCEROL, ... 著者 Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. 登録日 2015-03-10 公開日 2015-08-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
5CWL	Crystal structure of de novo designed helical repeat protein DHR54 分子名称: Designed helical repeat protein, SODIUM ION, TETRAETHYLENE GLYCOL, ... 著者 Bhabha, G, Ekiert, D.C. 登録日 2015-07-28 公開日 2015-12-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Exploring the repeat protein universe through computational protein design. Nature, 528, 2015
5D5D	In meso in situ serial X-ray crystallography structure of AlgE at 100 K 分子名称: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ... 著者 Ma, P, Huang, C.-Y, Olieric, V, Diederichs, K, Wang, M, Caffrey, M. 登録日 2015-08-10 公開日 2016-01-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures. Acta Crystallogr D Struct Biol, 72, 2016

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