PDB: 446 件ウェブページステータス検索Chemie searchBIRD

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7R6N	Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric construct 分子名称: Group I intron, MAGNESIUM ION 著者 Thelot, F, Liu, D, Liao, M, Yin, P. 登録日 2021-06-22 公開日 2022-05-04 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
7R6M	Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct 分子名称: Group I intron, Ligated exon mimic of the Group I intron, MAGNESIUM ION 著者 Thelot, F, Liu, D, Liao, M, Yin, P. 登録日 2021-06-22 公開日 2022-05-04 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.68 Å) 主引用文献 Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
7R6L	5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct 分子名称: Group I intron, 3 prime fragment plus 3 prime exon, 5 prime fragment, ... 著者 Thelot, F, Liu, D, Liao, M, Yin, P. 登録日 2021-06-22 公開日 2022-05-04 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
2P7F	The Novel Use of a 2',5'-Phosphodiester Linkage as a Reaction Intermediate at the Active Site of a Small Ribozyme 分子名称: COBALT HEXAMMINE(III), Loop A ribozyme strand, Loop B S-turn strand, ... 著者 Torelli, A.T, Krucinska, J, Wedekind, J.E. 登録日 2007-03-20 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization Rna, 13, 2007
2P7E	Vanadate at the Active Site of a Small Ribozyme Suggests a Role for Water in Transition-State Stabilization 分子名称: 3' substrate strand, octameric fragment, 5' substrate strand, ... 著者 Torelli, A.T, Krucinska, J, Wedekind, J.E. 登録日 2007-03-20 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization Rna, 13, 2007
2P7D	A Minimal, 'Hinged' Hairpin Ribozyme Construct Solved with Mimics of the Product Strands at 2.25 Angstroms Resolution 分子名称: 3' substrate strand, octameric fragment, 5' substrate strand, ... 著者 Torelli, A.T, Krucinska, J, Wedekind, J.E. 登録日 2007-03-20 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization Rna, 13, 2007
4P97	Functional conservation despite structural divergence in ligand-responsive RNA switches 分子名称: CALCIUM ION, RNA (5'-R(*CP*GP*AP*GP*AP*GP*GP*AP*CP*GP*G)-3'), RNA (5'-R(*CP*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*C)-3') 著者 Boerneke, M.A, Dibrov, S.M, Hermann, T.H. 登録日 2014-04-02 公開日 2015-03-04 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Functional conservation despite structural divergence in ligand-responsive RNA switches. Proc.Natl.Acad.Sci.USA, 111, 2014
2Z75	T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate 分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ... 著者 Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R. 登録日 2007-08-15 公開日 2007-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol., 373, 2007
2Z74	T. tengcongensis glmS ribozyme bound to glucose-6-phosphate 分子名称: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ... 著者 Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R. 登録日 2007-08-15 公開日 2007-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J.Mol.Biol., 373, 2007
4PHY	Functional conservation despite structural divergence in ligand-responsive RNA switches 分子名称: ACETATE ION, MAGNESIUM ION, RNA (26-MER), ... 著者 Boerneke, M.A, Dibrov, S.M, Hermann, T.H. 登録日 2014-05-07 公開日 2015-02-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Functional conservation despite structural divergence in ligand-responsive RNA switches. Proc.Natl.Acad.Sci.USA, 111, 2014
6D9M	T4-Lysozyme fusion to Geobacter GGDEF 分子名称: ACETATE ION, Fusion protein of Endolysin,Response receiver sensor diguanylate cyclase, GAF domain-containing, ... 著者 Hallberg, Z, Doxzen, K, Kranzusch, P.J, Hammond, M. 登録日 2018-04-30 公開日 2019-04-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration. Elife, 8, 2019
6UFG	Co-crystal structure of M. tuberculosis ileS T-box in complex with tRNA-3'-OH 分子名称: MAGNESIUM ION, POTASSIUM ION, RNA (166-MER), ... 著者 Battaglia, R.A, Grigg, J.C, Ke, A. 登録日 2019-09-24 公開日 2019-11-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.929 Å) 主引用文献 Structural basis for tRNA decoding and aminoacylation sensing by T-box riboregulators. Nat.Struct.Mol.Biol., 26, 2019
6UFH	Co-crystal structure of M. tuberculosis ileS T-box in complex with tRNA-3'-2'3'cyclic phosphate 分子名称: MAGNESIUM ION, RNA (167-MER), RNA (77-MER) 著者 Battaglia, R.A, Grigg, J.A, Ke, A. 登録日 2019-09-24 公開日 2019-11-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.104 Å) 主引用文献 Structural basis for tRNA decoding and aminoacylation sensing by T-box riboregulators. Nat.Struct.Mol.Biol., 26, 2019
4MEG	In vitro evolved glmS ribozyme triple mutant, magnesium ion complex 分子名称: (121-MER) ribozyme, MAGNESIUM ION, glmS triple mutant ribozyme 著者 Lau, M.W.L, Ferre-D'Amare, A.R. 登録日 2013-08-26 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence. Nat.Chem.Biol., 9, 2013
4MEH	In vitro evolved glmS ribozyme triple mutant, calcium ion complex 分子名称: (122-MER) ribozyme, CALCIUM ION, glmS triple mutant ribozyme 著者 Lau, M.W.L, Ferre-D'Amare, A.R. 登録日 2013-08-26 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence. Nat.Chem.Biol., 9, 2013
3MDG	Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im in complex with RNA UUGUAU 分子名称: Cleavage and polyadenylation specificity factor subunit 5, GLYCEROL, RNA (5'-R(*UP*UP*GP*UP*AP*U)-3') 著者 Yang, Q, Gilmartin, G.M, Doublie, S. 登録日 2010-03-30 公開日 2010-06-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing. Proc.Natl.Acad.Sci.USA, 107, 2010
3MDI	Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im in complex with RNA UGUAAA 分子名称: Cleavage and polyadenylation specificity factor subunit 5, GLYCEROL, RNA (5'-R(*UP*GP*UP*AP*AP*A)-3') 著者 Yang, Q, Gilmartin, G.M, Doublie, S. 登録日 2010-03-30 公開日 2010-06-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing. Proc.Natl.Acad.Sci.USA, 107, 2010
2GIP	Solution structure of a portion of the 5'UTR of HspA mRNA from Bradyrhizobium janponicum having deleted G83 分子名称: 28-MER 著者 Chowdhury, S, Maris, C, Allain, F.H, Narberhaus, F. 登録日 2006-03-29 公開日 2006-06-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Molecular basis for temperature sensing by an RNA thermometer. Embo J., 25, 2006
2GIO	Solution Structure of a portion of the 5'UTR of HspA mRNA of Bradyrhizobium japonicum 分子名称: 29-MER 著者 Chowdhury, S, Maris, C, Allain, F.H, Narberhaus, F. 登録日 2006-03-29 公開日 2006-06-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Molecular basis for temperature sensing by an RNA thermometer. Embo J., 25, 2006
2KZL	Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA 分子名称: RNA (55-MER) 著者 Wang, J. 登録日 2010-06-18 公開日 2011-02-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA To be Published
6UP0	Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin 分子名称: MAGNESIUM ION, Mango-III fluorescent aptamer, POTASSIUM ION, ... 著者 Trachman, R.J, Ferre-D'Amare, A.R. 登録日 2019-10-16 公開日 2020-10-21 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. Rna, 27, 2021

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