PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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3E45	Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DGP*DCP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
8B67	The crystal structure of M644G variant of DNA Pol Epsilon containing CTP in the polymerase active site 分子名称: ACETATE ION, CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-26 公開日 2023-10-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B6K	The crystal structure of M644G variant of DNA Pol Epsilon containing dCTP in the polymerase active site 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-27 公開日 2023-10-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B7E	The crystal structure of N828V variant of DNA Pol Epsilon containing UTP in the polymerase active site 分子名称: CALCIUM ION, DNA polymerase epsilon catalytic subunit A, GLYCEROL, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-29 公開日 2023-10-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B79	The crystal structure of M644G variant of DNA Pol Epsilon containing UTP in the polymerase active site 分子名称: ACETATE ION, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-29 公開日 2023-10-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B77	The crystal structure of N828V variant of DNA Pol Epsilon containing dATP in the polymerase active site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-29 公開日 2023-10-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
8B76	The crystal structure of M644G variant of DNA Pol Epsilon containing dTTP in the polymerase active site 分子名称: ACETATE ION, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... 著者 Parkash, V, Johansson, E. 登録日 2022-09-28 公開日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides. Nucleic Acids Res., 2023
6UKG	HhaI endonuclease in Complex With DNA in space group P21 (pH 4.2) 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*AP*GP*CP*GP*CP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*GP*CP*GP*CP*TP*TP*GP*GP*A)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2019-10-04 公開日 2019-12-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom. Nucleic Acids Res., 48, 2020
6UKF	HhaI endonuclease in Complex with DNA at 1 Angstrom Resolution 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2019-10-04 公開日 2019-12-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom. Nucleic Acids Res., 48, 2020
4YIT	Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA 分子名称: CALCIUM ION, DNA (25-MER), DNA (25MER), ... 著者 Hallinan, J.P, Stoddard, B.L. 登録日 2015-03-02 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity. Structure, 24, 2016
6UKE	HhaI endonuclease in Complex with Iodine-Labelled DNA 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2019-10-04 公開日 2019-12-18 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom. Nucleic Acids Res., 48, 2020
4LT5	Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA 分子名称: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ... 著者 Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X. 登録日 2013-07-23 公開日 2013-12-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.893 Å) 主引用文献 Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA. Nature, 506, 2014
6DWY	Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+ 分子名称: CALCIUM ION, DNA (26-MER), DNA (5'-D(*AP*GP*AP*GP*AP*AP*CP*AP*AP*CP*AP*AP*CP*AP*AP*G)-3'), ... 著者 Dyda, F, Hickman, A.B. 登録日 2018-06-28 公開日 2018-09-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase. Nucleic Acids Res., 46, 2018
5GWK	Human topoisomerase IIalpha in complex with DNA and etoposide 分子名称: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), ... 著者 Wang, Y.R, Wu, C.C, Chan, N.L. 登録日 2016-09-12 公開日 2017-08-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.152 Å) 主引用文献 Producing irreversible topoisomerase II-mediated DNA breaks by site-specific Pt(II)-methionine coordination chemistry Nucleic Acids Res., 45, 2017
2M2V	African Swine Fever Virus Pol X in the ternary complex with MgdGTP and DNA 分子名称: Repair DNA polymerase X 著者 Wu, W, Su, M, Tsai, M. 登録日 2013-01-03 公開日 2014-04-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 How a low-fidelity DNA polymerase chooses non-Watson-Crick from Watson-Crick incorporation. J.Am.Chem.Soc., 136, 2014
4FS5	Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM MgCl2 分子名称: CHLORIDE ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Chatake, T, Sunami, T. 登録日 2012-06-26 公開日 2013-05-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2 J.Inorg.Biochem., 124, 2013
3DPG	SgrAI with noncognate DNA bound 分子名称: CALCIUM ION, DNA (5'-D(*DAP*DAP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DT)-3'), SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2008-07-08 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008
2IEF	Structure of the cooperative Excisionase (Xis)-DNA complex reveals a micronucleoprotein filament 分子名称: 15-mer DNA, 19-mer DNA, 34-mer DNA, ... 著者 Abbani, M.A, Papagiannis, C.V, Sam, M.D, Cascio, D, Johnson, R.C, Clubb, R.T. 登録日 2006-09-18 公開日 2007-02-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.601 Å) 主引用文献 Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly. Proc.Natl.Acad.Sci.Usa, 104, 2007
3E0D	Insights into the Replisome from the Crystral Structure of the Ternary Complex of the Eubacterial DNA Polymerase III alpha-subunit 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase III subunit alpha, ... 著者 Wing, R.A, Bailey, S, Steitz, T.A. 登録日 2008-07-31 公開日 2008-09-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (4.6 Å) 主引用文献 Insights into the Replisome from the Structure of a Ternary Complex of the DNA Polymerase III alpha-Subunit. J.Mol.Biol., 382, 2008
6UKH	HhaI endonuclease in Complex with DNA in space group P41212 (pH 6.0) 分子名称: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*GP*CP*GP*CP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*GP*CP*GP*CP*TP*TP*GP*G)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2019-10-04 公開日 2019-12-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom. Nucleic Acids Res., 48, 2020
8R7Y	Deoxyribonucleoside regulator DeoR in complex with the DNA operator 分子名称: Deoxyribonucleoside regulator, OL18 DNA operator, strand 1, ... 著者 Pachl, P, Soltysova, M, Rezacova, P. 登録日 2023-11-27 公開日 2024-06-19 最終更新日 2024-07-17 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function. Nucleic Acids Res., 52, 2024
7NZ3	Cryo-EM structure of apposed MukBEF-MatP monomers on DNA 分子名称: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Acyl carrier protein, ... 著者 Buermann, F, Lowe, J. 登録日 2021-03-23 公開日 2021-07-07 最終更新日 2022-03-23 実験手法 ELECTRON MICROSCOPY (11 Å) 主引用文献 Cryo-EM structure of MukBEF reveals DNA loop entrapment at chromosomal unloading sites. Mol.Cell, 81, 2021
1ZX4	Structure of ParB bound to DNA 分子名称: CITRIC ACID, Plasmid Partition par B protein, parS-small DNA centromere site 著者 Schumacher, M.A, Funnell, B.E. 登録日 2005-06-06 公開日 2005-11-29 最終更新日 2017-10-04 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Structures of ParB bound to DNA reveal mechanism of partition complex formation. Nature, 438, 2005
4K9B	Structure of Ternary Complex of cGAS with dsDNA and Bound c[G(2 ,5 )pA(3 ,5 )p] 分子名称: ADENOSINE MONOPHOSPHATE, Cyclic GMP-AMP synthase, DNA-F, ... 著者 Gao, P, Wu, Y, Patel, D.J. 登録日 2013-04-19 公開日 2013-05-15 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase. Cell(Cambridge,Mass.), 153, 2013
3SI8	Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2) 分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, ... 著者 Biertumpfel, C, Zhao, Y, Kondo, Y, Ramon-Maiques, S, Gregory, M, Lee, J.Y, Masutani, C, Lehmann, A.R, Hanaoka, F, Yang, W. 登録日 2011-06-17 公開日 2011-08-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure and mechanism of human DNA polymerase eta. Nature, 465, 2010

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