PDB: 1466 件ウェブページステータス検索Chemie searchBIRD

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7OYD	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. 登録日 2021-06-24 公開日 2022-07-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
7OYC	Cryo-EM structure of the Xenopus egg 80S ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Leesch, F, Lorenzo-Orts, L, Grishkovskaya, I, Kandolf, S, Belacic, K, Meinhart, A, Haselbach, D, Pauli, A. 登録日 2021-06-24 公開日 2022-07-20 最終更新日 2023-02-08 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 A molecular network of conserved factors keeps ribosomes dormant in the egg. Nature, 613, 2023
7R70	Crystal Structure of the UbArk2C fusion protein 分子名称: GLYCEROL, Ubiquitin,E3 ubiquitin-protein ligase RNF165, ZINC ION 著者 Paluda, A, Middleton, A.J, Mace, P.D, Day, C.L. 登録日 2021-06-24 公開日 2022-03-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.499 Å) 主引用文献 Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C. Nat Commun, 13, 2022
7R71	Crystal Structure of the UbArk2C-UbcH5b~Ub complex 分子名称: Ubiquitin, Ubiquitin,E3 ubiquitin-protein ligase RNF165, Ubiquitin-conjugating enzyme E2 D2, ... 著者 Paluda, A, Middleton, A.J, Mace, P.D, Day, C.L. 登録日 2021-06-24 公開日 2022-03-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C. Nat Commun, 13, 2022
7F5S	human delta-METTL18 60S ribosome 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Takahashi, M, Kashiwagi, K, Ito, T. 登録日 2021-06-22 公開日 2022-06-22 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance. Elife, 11, 2022
7OWD	Structure of CYLD CAP-Gly3 (467-552) bound to Ub; tetragonal space group 分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase CYLD 著者 Elliott, P.R, Komander, D. 登録日 2021-06-17 公開日 2021-10-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Regulation of CYLD activity and specificity by phosphorylation and ubiquitin-binding CAP-Gly domains. Cell Rep, 37, 2021
7OWC	Structure of CYLD CAP-Gly3 (467-565) bound to Ub; orthorhobic space group 分子名称: Deubiquitinating enzyme CYLD, Ubiquitin-60S ribosomal protein L40 著者 Elliott, P.R, Komander, D. 登録日 2021-06-17 公開日 2021-10-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Regulation of CYLD activity and specificity by phosphorylation and ubiquitin-binding CAP-Gly domains. Cell Rep, 37, 2021
7OSM	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ... 著者 Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2021-06-09 公開日 2021-12-08 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Accuracy mechanism of eukaryotic ribosome translocation. Nature, 600, 2021
7OSA	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ... 著者 Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2021-06-08 公開日 2021-12-08 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Accuracy mechanism of eukaryotic ribosome translocation. Nature, 600, 2021
7F0U	porcine epidemic diarrhea virus papain-like protease 2 C44S mutant in complex with mono ubiquitin 分子名称: Ubiquitin, ZINC ION, papain-like protease 2 著者 Chu, H.F, Lin, T.H. 登録日 2021-06-07 公開日 2021-10-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural and Biochemical Characterization of Porcine Epidemic Diarrhea Virus Papain-Like Protease 2. J.Virol., 96, 2022
7F0N	Structure of deamidated Ubiquitin 分子名称: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ... 著者 Chauhan, K, Varshney, N, Das, R. 登録日 2021-06-06 公開日 2022-06-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of deamidated Ubiquitin To Be Published
7OOJ	Structure of D-Thr53 Ubiquitin 分子名称: CADMIUM ION, Ubiquitin 著者 Becker, S. 登録日 2021-05-27 公開日 2022-05-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A litmus test for classifying recognition mechanisms of transiently binding proteins. Nat Commun, 13, 2022
7ONI	Structure of Neddylated CUL5 C-terminal region-RBX2-ARIH2* 分子名称: Cullin-5, E3 ubiquitin-protein ligase ARIH2, NEDD8, ... 著者 Kostrhon, S.P, prabu, J.R, Schulman, B.A. 登録日 2021-05-25 公開日 2021-09-15 最終更新日 2021-10-06 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 CUL5-ARIH2 E3-E3 ubiquitin ligase structure reveals cullin-specific NEDD8 activation. Nat.Chem.Biol., 17, 2021
7EVO	The cryo-EM structure of the human 17S U2 snRNP 分子名称: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, RNA helicase, ... 著者 Zhang, X, Zhan, X, Shi, Y. 登録日 2021-05-21 公開日 2022-08-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural insights into branch site proofreading by human spliceosome. Nat.Struct.Mol.Biol., 2024
7MYF	Ubiquitin variant UbV.k.1 in complex with Ube2k 分子名称: Ubiquitin, Ubiquitin variant UbV.k.1, Ubiquitin-conjugating enzyme E2 K 著者 Middleton, A.J, Day, C.L, Teyra, J, Sidhu, S.S. 登録日 2021-05-21 公開日 2021-08-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Identification of Ubiquitin Variants That Inhibit the E2 Ubiquitin Conjugating Enzyme, Ube2k. Acs Chem.Biol., 16, 2021
7MYH	Ubiquitin variant UbV.k.2 in complex with Ube2k 分子名称: GLYCEROL, Ubiquitin variant UbV.k.2, Ubiquitin-conjugating enzyme E2 K 著者 Middleton, A.J, Day, C.L, Teyra, J, Sidhu, S.S. 登録日 2021-05-21 公開日 2021-08-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.394 Å) 主引用文献 Identification of Ubiquitin Variants That Inhibit the E2 Ubiquitin Conjugating Enzyme, Ube2k. Acs Chem.Biol., 16, 2021
7OLD	Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state 分子名称: 18S rRNA, 26S rRNA, 40S ribosomal protein S0, ... 著者 Kisonaite, M, Wild, K, Sinning, I. 登録日 2021-05-19 公開日 2022-01-26 最終更新日 2022-02-09 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation. Nat Commun, 13, 2022
7OLC	Thermophilic eukaryotic 80S ribosome at idle POST state 分子名称: 18S rRNA, 26S rRNA, 40S ribosomal protein S0, ... 著者 Kisonaite, M, Wild, K, Sinning, I. 登録日 2021-05-19 公開日 2022-01-26 最終更新日 2022-04-06 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation. Nat Commun, 13, 2022
7OJX	E2 UBE2K covalently linked to donor Ub, acceptor di-Ub, and RING E3 primed for K48-linked Ub chain synthesis 分子名称: 1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione), E3 ubiquitin-protein ligase RNF38, Polyubiquitin-B, ... 著者 Majorek, K.A, Nakasone, M.A, Huang, D.T. 登録日 2021-05-17 公開日 2022-01-12 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of UBE2K-Ub/E3/polyUb reveals mechanisms of K48-linked Ub chain extension. Nat.Chem.Biol., 18, 2022
7OJE	Crystal structure of the covalent complex between Tribolium castaneum deubiquitinase ZUP and Ubiquitin-PA 分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Lys-63-specific deubiquitinase ZUFSP, ... 著者 Pichlo, C, Hermanns, T, Hofmann, K, Baumann, U. 登録日 2021-05-14 公開日 2022-02-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A structural basis for the diverse linkage specificities within the ZUFSP deubiquitinase family. Nat Commun, 13, 2022
7MQA	Cryo-EM structure of the human SSU processome, state post-A1 分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Vanden Broeck, A, Singh, S, Klinge, S. 登録日 2021-05-05 公開日 2021-09-22 最終更新日 2021-09-29 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Nucleolar maturation of the human small subunit processome. Science, 373, 2021
7MQ9	Cryo-EM structure of the human SSU processome, state pre-A1* 分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Vanden Broeck, A, Singh, S, Klinge, S. 登録日 2021-05-05 公開日 2021-09-22 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.87 Å) 主引用文献 Nucleolar maturation of the human small subunit processome. Science, 373, 2021
7MIC	Maize rayado fino virus protease in complex with Ubiquitin 分子名称: 3-AMINOPROPANE, GLYCEROL, RNA replication protein, ... 著者 Patel, A, Mark, B.L. 登録日 2021-04-16 公開日 2021-07-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase. J.Biol.Chem., 297, 2021
7O7Z	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. 登録日 2021-04-14 公開日 2021-06-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
7O81	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. 登録日 2021-04-14 公開日 2021-06-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021

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