PDB: 45118 件ウェブページステータス検索Chemie searchBIRD

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5ZPI	Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 293 K (3) 分子名称: 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ... 著者 Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T. 登録日 2018-04-16 公開日 2018-12-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5EUA	Crystal structure of extended-spectrum beta-lactamase BEL-1 in complex with Moxalactam 分子名称: (2R)-2-[(1R)-1-{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}-1-methoxy-2-oxoethyl]-5-methylidene-5,6-dihydro-2H-1,3 -oxazine-4-carboxylic acid, Beta-lactamase, SODIUM ION 著者 Pozzi, C, De Luca, F, Benvenuti, M, Docquier, J.D, Mangani, S. 登録日 2015-11-18 公開日 2016-09-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal Structure of the Pseudomonas aeruginosa BEL-1 Extended-Spectrum beta-Lactamase and Its Complexes with Moxalactam and Imipenem. Antimicrob.Agents Chemother., 60, 2016
8BFE	A dimeric de novo coiled-coil assembly: PK-2 (CC-TypeN-LaUbUcLd) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, CC-TypeN-LaUbUcLd, ... 著者 Kumar, P, Paterson, N.G, Woolfson, D.N. 登録日 2022-10-25 公開日 2022-11-23 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 De novo design of discrete, stable 3 10 -helix peptide assemblies. Nature, 607, 2022
5EV1	Structure I of Intact U2AF65 Recognizing a 3' Splice Site Signal 分子名称: DI(HYDROXYETHYL)ETHER, DNA/RNA (5'-R(*UP*UP*U)-D(P*UP*UP*(BRU)P*U)-R(P*UP*U)-3'), SODIUM ION, ... 著者 Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. 登録日 2015-11-19 公開日 2016-02-24 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.037 Å) 主引用文献 An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun, 7, 2016
4M5P	OYE2.6 Y78W, I113C 分子名称: FLAVIN MONONUCLEOTIDE, MALONIC ACID, NADPH dehydrogenase, ... 著者 Sullivan, B, Stewart, J.D. 登録日 2013-08-08 公開日 2014-06-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.503 Å) 主引用文献 Residues Controlling Facial Selectivity in an Alkene Reductase and Semirational Alterations to Create Stereocomplementary Variants. ACS catalysis, 4, 2014
6BVE	Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid 分子名称: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase 著者 Jimenez-Sandoval, P, Castro-Torres, E, Brieba, L.G. 登録日 2017-12-12 公開日 2018-12-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis. Front Mol Biosci, 5, 2018
6BTE	DNA Polymerase Beta I260Q Binary Complex 分子名称: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ... 著者 Eckenroth, B.E, Doublie, S. 登録日 2017-12-06 公開日 2018-09-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity. Nucleic Acids Res., 46, 2018
5Z48	Crystal structure of pyrrolidone carboxylate peptidase I from Deinococcus radiodurans R1 bound to pyroglutamate 分子名称: DIMETHYL SULFOXIDE, PYROGLUTAMIC ACID, Pyrrolidone-carboxylate peptidase, ... 著者 Agrawal, R, Kumar, A, Kumar, A, Makde, R.D. 登録日 2018-01-10 公開日 2019-01-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.551 Å) 主引用文献 Crystal structures of pyrrolidone-carboxylate peptidase I from Deinococcus radiodurans reveal the mechanism of L-pyroglutamate recognition. Acta Crystallogr D Struct Biol, 75, 2019
5FJE	CU(I)-CSP1 (COPPER STORAGE PROTEIN 1) FROM METHYLOSINUS TRICHOSPORIUM OB3B 分子名称: COPPER (I) ION, COPPER STORAGE PROTEIN 1, SODIUM ION 著者 Vita, N, Platsaki, S, Basle, A, Allen, S.J, Paterson, N.G, Crombie, A.T, Murrell, J.C, Waldron, K.J, Dennison, C. 登録日 2015-10-07 公開日 2015-11-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A Four-Helix Bundle Stores Copper for Methane Oxidation. Nature, 525, 2015
6C39	Apo crystal structure of wild-type S. aureus penicillin binding protein 4 (PBP4) 分子名称: SODIUM ION, SULFATE ION, Serine-type D-Ala-D-Ala carboxypeptidase, ... 著者 Alexander, J.A.N, Strynadka, N.C.J. 登録日 2018-01-09 公開日 2018-11-07 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance inStaphylococcus aureus. J. Biol. Chem., 293, 2018
5ZK0	Crystal structure of Peptidyl-tRNA hydrolase mutant -M71A from Vibrio cholerae 分子名称: Peptidyl-tRNA hydrolase, SODIUM ION 著者 Shahid, S, Kabra, A, Pal, R.K, Arora, A. 登録日 2018-03-22 公開日 2018-06-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Role of methionine 71 in substrate recognition and structural integrity of bacterial peptidyl-tRNA hydrolase. Biochim. Biophys. Acta, 1866, 2018
5G0G	Crystal structure of Danio rerio HDAC6 CD1 in complex with trichostatin A 分子名称: CHLORIDE ION, HDAC6, SODIUM ION, ... 著者 Miyake, Y, Keusch, J.J, Wang, L, Saito, M, Hess, D, Wang, X, Melancon, B.J, Helquist, P, Gut, H, Matthias, P. 登録日 2016-03-18 公開日 2016-07-27 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.499 Å) 主引用文献 Structural Insights Into Hdac6 Tubulin Deacetylation and its Selective Inhibition Nat.Chem.Biol., 12, 2016
6CRH	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-17 公開日 2019-03-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.327 Å) 主引用文献 Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA Lesion. Molecules, 24, 2019
6CU9	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE To Be Published
6CDQ	Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei with INH bound. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Catalase-peroxidase, ... 著者 Loewen, P.C. 登録日 2018-02-09 公開日 2018-02-21 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei with INH bound. To be published
5G2H	S. enterica HisA with mutation L169R 分子名称: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, GLYCEROL, SODIUM ION, ... 著者 Newton, M, Guo, X, Soderholm, A, Nasvall, J, Duarte, F, Andersson, D, Patrick, W, Selmer, M. 登録日 2016-04-08 公開日 2017-04-19 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural and functional innovations in the real-time evolution of new ( beta alpha )8 barrel enzymes. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8B9Z	Drosophila melanogaster complex I in the Active state (Dm1) 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Agip, A.A, Chung, I, Sanchez-Martinez, A, Whitworth, A.J, Hirst, J. 登録日 2022-10-10 公開日 2023-01-18 実験手法 ELECTRON MICROSCOPY (3.28 Å) 主引用文献 Cryo-EM structures of mitochondrial respiratory complex I from Drosophila melanogaster. Elife, 12, 2023
5WN3	APE1 F266A exonuclease substrate complex with a C/T mismatch 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... 著者 Freudenthal, B.D, Whitaker, A.M. 登録日 2017-07-31 公開日 2018-02-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular snapshots of APE1 proofreading mismatches and removing DNA damage. Nat Commun, 9, 2018
6CTM	Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHCL(R-isomer), beta, gamma dTTP analogue 分子名称: 5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2018-03-23 公開日 2018-06-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018
6CC6	Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Catalase-peroxidase, OXYGEN MOLECULE, ... 著者 Loewen, P.C. 登録日 2018-02-06 公開日 2018-02-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei To be published
5WN1	APE1 exonuclease product complex 分子名称: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*G)-3'), ... 著者 Freudenthal, B.D, Whitaker, A.M. 登録日 2017-07-31 公開日 2018-02-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Molecular snapshots of APE1 proofreading mismatches and removing DNA damage. Nat Commun, 9, 2018
4KLJ	DNA polymerase beta matched product complex with Mg2+, 5 min 分子名称: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... 著者 Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H. 登録日 2013-05-07 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.799 Å) 主引用文献 Observing a DNA polymerase choose right from wrong. Cell(Cambridge,Mass.), 154, 2013
6CUA	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE To Be Published
5VZ9	Post-catalytic complex of human Polymerase Mu (G433A) mutant with incoming dTTP 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3'), ... 著者 Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C. 登録日 2017-05-27 公開日 2017-07-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu. Nucleic Acids Res., 45, 2017
4KLO	DNA polymerase beta matched nick complex with Mg2+ and PPi, 30 min 分子名称: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... 著者 Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H. 登録日 2013-05-07 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.845 Å) 主引用文献 Observing a DNA polymerase choose right from wrong. Cell(Cambridge,Mass.), 154, 2013

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