PDB: 463 件ウェブページステータス検索Chemie searchBIRD

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6VYU	Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (7 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6J51	RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome, weak Elf1 (+1 position) 分子名称: DNA (198-MER), DNA (36-MER), DNA-directed RNA polymerase subunit, ... 著者 Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2019-01-10 公開日 2019-02-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Science, 363, 2019
6K71	eIF2 - eIF2B complex 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Kashiwagi, K, Yokoyama, T, Ito, T. 登録日 2019-06-05 公開日 2019-07-10 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural basis for eIF2B inhibition in integrated stress response. Science, 364, 2019
6VYW	Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (7 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6VYX	Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-02-27 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6KF9	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA (27-MER), DNA (5'-D(P*TP*CP*GP*GP*TP*AP*AP*TP*CP*AP*CP*GP*CP*TP*CP*C)-3'), DNA-directed RNA polymerase subunit, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-07 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.79 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
6X7K	Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Ebright, R.H, Wang, C, Su, M. 登録日 2020-05-30 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6XDQ	Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Ebright, R.H, Wang, C, Su, M. 登録日 2020-06-11 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6X7F	Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Ebright, R.H, Wang, C, Su, M. 登録日 2020-05-29 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6KF4	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-06 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
6XGF	Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R.H. 登録日 2020-06-17 公開日 2020-09-02 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6XAV	CryoEM Structure of E. coli Rho-dependent Transcription Pre-termination Complex bound with NusG 分子名称: DNA (29-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Hao, Z.T, Kim, H.K, Walz, T, Nudler, E. 登録日 2020-06-04 公開日 2020-12-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Pre-termination Transcription Complex: Structure and Function. Mol.Cell, 81, 2021
6K72	eIF2(aP) - eIF2B complex 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Kashiwagi, K, Yokoyama, T, Ito, T. 登録日 2019-06-05 公開日 2019-07-10 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structural basis for eIF2B inhibition in integrated stress response. Science, 364, 2019
6KF3	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-06 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
6J4Y	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1B) 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2019-01-10 公開日 2019-02-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Science, 363, 2019
6J9E	Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 分子名称: 45L, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 You, L.L, Zhang, Y. 登録日 2019-01-22 公開日 2019-07-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Structural basis for transcription antitermination at bacterial intrinsic terminator. Nat Commun, 10, 2019
6J50	RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation) 分子名称: DNA (198-MER), DNA (41-MER), DNA-directed RNA polymerase subunit, ... 著者 Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2019-01-10 公開日 2019-02-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Science, 363, 2019
8RBX	Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. 登録日 2023-12-05 公開日 2024-02-07 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 629, 2024
8S51	RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8RCT	Escherichia coli paused disome complex (Rotated disome interface class 2) 分子名称: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... 著者 Fluegel, T, Schacherl, M. 登録日 2023-12-07 公開日 2024-03-06 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (5.32 Å) 主引用文献 Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8S52	RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S54	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabber, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S55	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state a (composite structure) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-22 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8S5N	RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Zhan, Y, Grabbe, F, Oberbeckmann, E, Dienemann, C, Cramer, P. 登録日 2024-02-24 公開日 2024-04-10 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
8RBO	Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation 分子名称: DNA-directed RNA polymerase subunit Rpo10, DNA-directed RNA polymerase subunit Rpo11, DNA-directed RNA polymerase subunit Rpo12, ... 著者 Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-12-04 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024

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