PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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5BZ9	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. 分子名称: DNA (5'-D(GGAAACGTTGGAGA), MAGNESIUM ION 著者 Saoji, M, Paukstelis, P.J. 登録日 2015-06-11 公開日 2015-11-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
8G5N	Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.73 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5K	Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5M	Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5P	Cryo-EM structure of the Guide loop Engagement Complex (V) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5I	Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.75 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5J	Cryo-EM structure of the Mismatch Uncoupling Complex (II) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.63 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5L	Cryo-EM structure of the Primer Separation Complex (IX) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5O	Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma 分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... 著者 Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. 登録日 2023-02-13 公開日 2024-01-10 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Structural basis for DNA proofreading. Nat Commun, 14, 2023
6UEF	Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to Attempt to Disrupt Crystal Contacts in a Rhombohedral Lattice. 分子名称: DNA (5'-D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2019-09-20 公開日 2020-09-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
7XH3	Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*G)-3') 著者 Zhang, Y, Lan, W, Wang, C, Cao, C. 登録日 2022-04-07 公開日 2023-02-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis. Chin.J.Chem., 40, 2022
6AEQ	Crystal structure of the ssDNA-binding domain of DnaT from Salmonella enterica Serovar Typhimurium LT2 分子名称: Primosomal protein 1 著者 Huang, Y.H, Huang, C.Y. 登録日 2018-08-06 公開日 2019-03-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.2518084 Å) 主引用文献 Crystal structure of the C-terminal domain of the primosomal DnaT protein: Insights into a new oligomerization mechanism. Biochem. Biophys. Res. Commun., 511, 2019
6A5N	Crystal structure of Arabidopsis thaliana SUVH6 in complex with methylated DNA 分子名称: DNA (5'-D(*CP*AP*CP*TP*GP*CP*TP*GP*AP*GP*TP*AP*CP*T)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*CP*TP*(5CM)P*AP*GP*CP*AP*GP*T)-3'), Histone-lysine N-methyltransferase, ... 著者 Li, X, Du, J. 登録日 2018-06-24 公開日 2018-08-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5UGO	DNA polymerase beta nick complex with imidodiphosphate 分子名称: CALCIUM ION, DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), ... 著者 Freudenthal, B.D, Wilson, S.H, Beard, W.A. 登録日 2017-01-09 公開日 2017-07-26 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.897 Å) 主引用文献 Modulating the DNA polymerase beta reaction equilibrium to dissect the reverse reaction. Nat. Chem. Biol., 13, 2017
5U8H	DNA Polymerase Beta G231D crystallized in PEG 400 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... 著者 Eckenroth, B.E, Doublie, S. 登録日 2016-12-14 公開日 2017-04-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.155 Å) 主引用文献 Remote Mutations Induce Functional Changes in Active Site Residues of Human DNA Polymerase beta. Biochemistry, 56, 2017
6TZS	A DNA i-motif/duplex hybrid 分子名称: DNA (5'-D(*CP*CP*AP*GP*GP*CP*TP*GP*(CBR)P*AP*A)-3') 著者 Chu, B, Paukstelis, P.J. 登録日 2019-08-13 公開日 2019-10-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
5Y7Q	Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap 分子名称: DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ... 著者 Jin, H, Cho, Y. 登録日 2017-08-17 公開日 2018-03-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease. J. Biol. Chem., 293, 2018
5Z6W	Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap with Manganese 分子名称: DNA (5'-D(P*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ... 著者 Jin, H, Cho, Y. 登録日 2018-01-25 公開日 2018-03-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease. J. Biol. Chem., 293, 2018
5ZB2	Crystal structure of Rad7 and Elc1 complex in yeast 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ... 著者 Jiang, T, Liu, L, Huo, Y. 登録日 2018-02-09 公開日 2019-02-27 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.30000544 Å) 主引用文献 Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex. DNA Repair (Amst.), 77, 2019
4QWC	Ternary Crystal Structures of a Y-family DNA polymerase DPO4 from Sulfobus Solfataricus in Comples with DNA and L-DCDP 分子名称: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CALCIUM ION, ... 著者 Vyas, R, Suo, Z. 登録日 2014-07-16 公開日 2014-08-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
6UR2	DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and primer containing an N3'-> P5' linkage 分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42)P*G)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I 著者 Zhang, W, Lelyveld, V.S, Szostak, J.W. 登録日 2019-10-21 公開日 2020-03-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase. Proc.Natl.Acad.Sci.USA, 117, 2020
6UR4	DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and 3'-amino primer 分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42))-3'), DNA (5'-D(P*CP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I 著者 Zhang, W, Lelyveld, V.S, Szostak, J.W. 登録日 2019-10-22 公開日 2020-03-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase. Proc.Natl.Acad.Sci.USA, 117, 2020
4RTS	Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTCTA) 分子名称: DNA (5'-D(*AP*CP*TP*TP*AP*GP*AP*CP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*TP*AP*AP*G)-3'), DNA adenine methylase, ... 著者 Horton, J.R, Cheng, X. 登録日 2014-11-15 公開日 2015-04-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression. Nucleic Acids Res., 43, 2015
4RTO	Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with Sinefungin and with DNA Containing Proximal Pap Regulon Sequence 分子名称: DNA (5'-D(*AP*CP*GP*AP*TP*CP*TP*TP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*AP*AP*AP*GP*AP*TP*CP*G)-3'), DNA adenine methylase, ... 著者 Horton, J.R, Cheng, X. 登録日 2014-11-15 公開日 2015-04-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression. Nucleic Acids Res., 43, 2015
4RTR	Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTTTA ) 分子名称: DNA (5'-D(*AP*CP*TP*TP*AP*AP*AP*CP*TP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*AP*AP*GP*TP*TP*TP*AP*AP*G)-3'), DNA adenine methylase, ... 著者 Horton, J.R, Cheng, X. 登録日 2014-11-15 公開日 2015-04-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.393 Å) 主引用文献 Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression. Nucleic Acids Res., 43, 2015

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