Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4GWE
DownloadVisualize
BU of 4gwe by Molmil
W116L-OYE1 complexed with (R)-carvone
分子名称: (5R)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Pompeu, Y.A, Stewart, J.D.
登録日2012-09-02
公開日2012-10-03
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase
ACS CATALYSIS, 3, 2013
6BHQ
DownloadVisualize
BU of 6bhq by Molmil
Mouse Immunoglobulin G 2c Fc fragment with complex-type glycan
分子名称: GLYCEROL, Igh protein, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Falconer, D, Barb, A.
登録日2017-10-31
公開日2018-02-14
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Mouse IgG2c Fc loop residues promote greater receptor-binding affinity than mouse IgG2b or human IgG1.
PLoS ONE, 13, 2018
2CCP
DownloadVisualize
BU of 2ccp by Molmil
X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS
分子名称: PROTOPORPHYRIN IX CONTAINING FE, YEAST CYTOCHROME C PEROXIDASE
著者Wang, J, Mauro, J.M, Edwards, S.L, Oatley, S.J, Fishel, L.A, Ashford, V.A, Xuong, N.-H, Kraut, J.
登録日1990-02-28
公開日1991-07-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-ray structures of recombinant yeast cytochrome c peroxidase and three heme-cleft mutants prepared by site-directed mutagenesis.
Biochemistry, 29, 1990
1CPD
DownloadVisualize
BU of 1cpd by Molmil
A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE
分子名称: AMMONIUM ION, CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
著者Miller, M.A, Han, G.W, Kraut, J.
登録日1994-08-18
公開日1994-11-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A cation binding motif stabilizes the compound I radical of cytochrome c peroxidase.
Proc.Natl.Acad.Sci.USA, 91, 1994
4GP8
DownloadVisualize
BU of 4gp8 by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant Y133W+T231F from Thermus thermophilus
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
著者Li, Y, Chen, Y, Stout, C.D.
登録日2012-08-20
公開日2013-01-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ligand Access to the Active Site in Thermus thermophilusba(3) and Bovine Heart aa(3) Cytochrome Oxidases.
Biochemistry, 52, 2013
2CEL
DownloadVisualize
BU of 2cel by Molmil
ACTIVE-SITE MUTANT E212Q DETERMINED AT PH 6.0 WITH NO LIGAND BOUND IN THE ACTIVE SITE
分子名称: 1,4-BETA-D-GLUCAN CELLOBIOHYDROLASE I, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION
著者Divne, C, Stahlberg, J, Jones, T.A.
登録日1996-08-24
公開日1997-03-12
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Activity studies and crystal structures of catalytically deficient mutants of cellobiohydrolase I from Trichoderma reesei.
J.Mol.Biol., 264, 1996
1QKI
DownloadVisualize
BU of 1qki by Molmil
X-RAY STRUCTURE OF HUMAN GLUCOSE 6-PHOSPHATE DEHYDROGENASE (VARIANT CANTON R459L) COMPLEXED WITH STRUCTURAL NADP+
分子名称: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE, GLYCEROL, GLYCOLIC ACID, ...
著者Au, S.W.N, Gover, S, Lam, V.M.S, Adams, M.J.
登録日1999-07-20
公開日2000-03-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Human Glucose-6-Phosphate Dehydrogenase: The Crystal Structure Reveals a Structural Nadp+ Molecule and Provides Insights Into Enzyme Deficiency
Structure, 8, 2000
1ZA5
DownloadVisualize
BU of 1za5 by Molmil
Q69H-FeSOD
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, Superoxide dismutase [Fe]
著者Yikilmaz, E, Rodgers, D.W, Miller, A.F.
登録日2005-04-05
公開日2006-03-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Crucial Importance of Chemistry in the Structure-Function Link: Manipulating Hydrogen Bonding in Iron-Containing Superoxide Dismutase.
Biochemistry, 45, 2006
2VW7
DownloadVisualize
BU of 2vw7 by Molmil
Nitrite reductase from Alcaligenes xylosoxidans - 1 of 3
分子名称: COPPER (II) ION, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, TETRAETHYLENE GLYCOL, ...
著者Ellis, M.J, Buffey, S.G, Hough, M.A, Hasnain, S.S.
登録日2008-06-16
公開日2008-09-09
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献On-Line Optical and X-Ray Spectroscopies with Crystallography: An Integrated Approach for Determining Metalloprotein Structures in Functionally Well Defined States.
J.Synchrotron Radiat., 15, 2008
3MB9
DownloadVisualize
BU of 3mb9 by Molmil
Human Aldose Reductase mutant T113A complexed with Zopolrestat
分子名称: 3,4-DIHYDRO-4-OXO-3-((5-TRIFLUOROMETHYL-2-BENZOTHIAZOLYL)METHYL)-1-PHTHALAZINE ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Koch, C, Heine, A, Klebe, G.
登録日2010-03-25
公開日2011-03-09
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Ligand-induced fit affects binding modes and provokes changes in crystal packing of aldose reductase
Biochim.Biophys.Acta, 1810, 2011
1ZLQ
DownloadVisualize
BU of 1zlq by Molmil
Crystallographic and spectroscopic evidence for high affinity binding of Fe EDTA (H2O)- to the periplasmic nickel transporter NikA
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ACETATE ION, CHLORIDE ION, ...
著者Cherrier, M.V, Martin, L, Cavazza, C, Jacquamet, L, Lemaire, D, Gaillard, J, Fontecilla Camps, J.C.
登録日2005-05-09
公開日2005-08-02
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic and Spectroscopic Evidence for High Affinity Binding of FeEDTA(H(2)O)(-) to the Periplasmic Nickel Transporter NikA
J.Am.Chem.Soc., 127, 2005
4FCS
DownloadVisualize
BU of 4fcs by Molmil
The crystal structures of several mutants of pleurotus eryngii versatile peroxidase
分子名称: CALCIUM ION, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Mate, M.J, Romero, A, Ruiz-Duenas, F.J, Martinez, A.T.
登録日2012-05-25
公開日2012-10-24
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Two Oxidation Sites for Low Redox Potential Substrates: A DIRECTED MUTAGENESIS, KINETIC, AND CRYSTALLOGRAPHIC STUDY ON PLEUROTUS ERYNGII VERSATILE PEROXIDASE.
J.Biol.Chem., 287, 2012
2OLW
DownloadVisualize
BU of 2olw by Molmil
Crystal Structure of E. coli pseudouridine synthase RluE
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ACETIC ACID, Ribosomal large subunit pseudouridine synthase E, ...
著者Pan, H, Ho, J.D, Stroud, R.M, Finer-Moore, J.
登録日2007-01-19
公開日2007-03-13
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Crystal Structure of E. coli rRNA Pseudouridine Synthase RluE.
J.Mol.Biol., 367, 2007
1HWK
DownloadVisualize
BU of 1hwk by Molmil
COMPLEX OF THE CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE WITH ATORVASTATIN
分子名称: 7-[2-(4-FLUORO-PHENYL)-5-ISOPROPYL-3-PHENYL-4-PHENYLCARBAMOYL-PYRROL-1-YL]- 3,5-DIHYDROXY-HEPTANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, HMG-COA REDUCTASE
著者Istvan, E.S, Deisenhofer, J.
登録日2001-01-09
公開日2001-05-11
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Structural mechanism for statin inhibition of HMG-CoA reductase.
Science, 292, 2001
6FKK
DownloadVisualize
BU of 6fkk by Molmil
Drosophila Semaphorin 1b, extracellular domains 1-2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MIP07328p, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Rozbesky, D, Harlos, K, Jones, E.Y.
登録日2018-01-24
公開日2019-02-06
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.78 Å)
主引用文献Diversity of oligomerization in Drosophila semaphorins suggests a mechanism of functional fine-tuning.
Nat Commun, 10, 2019
4K45
DownloadVisualize
BU of 4k45 by Molmil
Auto-inhibition and phosphorylation-induced activation of PLC-gamma isozymes
分子名称: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, short peptide
著者Sondek, J, Hajicek, N.
登録日2013-04-11
公開日2013-06-26
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Autoinhibition and Phosphorylation-Induced Activation of Phospholipase C-gamma Isozymes.
Biochemistry, 52, 2013
1EE2
DownloadVisualize
BU of 1ee2 by Molmil
THE STRUCTURE OF STEROID-ACTIVE ALCOHOL DEHYDROGENASE AT 1.54 A RESOLUTION
分子名称: ALCOHOL DEHYDROGENASE, CHOLIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Adolph, H.W.
登録日2000-01-30
公開日2000-10-27
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structural basis for substrate specificity differences of horse liver alcohol dehydrogenase isozymes.
Biochemistry, 39, 2000
7K9V
DownloadVisualize
BU of 7k9v by Molmil
Cryptococcus neoformans Hsp90 nucleotide binding domain in complex with BUCMD00452
分子名称: (1,3-dihydro-2H-isoindol-2-yl)(2,4-dihydroxy-6-{[1-methyl-3-(2-methylphenyl)-1H-pyrazol-5-yl]amino}phenyl)methanone, BENZAMIDINE, CHLORIDE ION, ...
著者Kuntz, D.A, Prive, G.G.
登録日2020-09-29
公開日2021-01-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Fungal-Selective Resorcylate Aminopyrazole Hsp90 Inhibitors: Optimization of Whole-Cell Anticryptococcal Activity and Insights into the Structural Origins of Cryptococcal Selectivity.
J.Med.Chem., 64, 2021
3Q6J
DownloadVisualize
BU of 3q6j by Molmil
Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M Oxidoreductase/Carboxylase
分子名称: (2-[2-KETOPROPYLTHIO]ETHANESULFONATE, 1-THIOETHANESULFONIC ACID, 2-oxopropyl-CoM reductase, ...
著者Pandey, A.S, Mulder, D.W, Ensign, S.A, Peters, J.W.
登録日2011-01-01
公開日2011-02-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M oxidoreductase/carboxylase.
Febs Lett., 585, 2011
4FHD
DownloadVisualize
BU of 4fhd by Molmil
Spore photoproduct lyase complexed with dinucleoside spore photoproduct
分子名称: 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione, IRON/SULFUR CLUSTER, PYROPHOSPHATE 2-, ...
著者Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I.
登録日2012-06-06
公開日2012-07-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.
Nucleic Acids Res., 40, 2012
2PDM
DownloadVisualize
BU of 2pdm by Molmil
Human aldose reductase mutant S302R complexed with zopolrestat.
分子名称: 3,4-DIHYDRO-4-OXO-3-((5-TRIFLUOROMETHYL-2-BENZOTHIAZOLYL)METHYL)-1-PHTHALAZINE ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Steuber, H, Heine, A, Klebe, G.
登録日2007-04-01
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Merging the binding sites of aldose and aldehyde reductase for detection of inhibitor selectivity-determining features.
J.Mol.Biol., 379, 2008
7D93
DownloadVisualize
BU of 7d93 by Molmil
Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ and anthroylouabain (P2(1)2(1)2(1) symmetry)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C.
登録日2020-10-12
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state.
Proc.Natl.Acad.Sci.USA, 118, 2021
4FA7
DownloadVisualize
BU of 4fa7 by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant A204F from Thermus thermophilus
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
著者Li, Y, Chen, Y, Stout, C.D.
登録日2012-05-21
公開日2012-05-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献

4FR5
DownloadVisualize
BU of 4fr5 by Molmil
Crystal Structure of Shikimate Dehydrogenase (aroE) Y210S Mutant from Helicobacter pylori in Complex with Shikimate
分子名称: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, Shikimate dehydrogenase
著者Cheng, W.C, Chen, T.J, Wang, W.C.
登録日2012-06-26
公開日2012-12-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献

1YRP
DownloadVisualize
BU of 1yrp by Molmil
Catalytic domain of human ZIP kinase phosphorylated at Thr265
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Death-associated protein kinase 3
著者Kursula, P, Vahokoski, J, Wilmanns, M.
登録日2005-02-04
公開日2006-06-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Death-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites
Structure, 2016

243531

件を2025-10-22に公開中

PDB statisticsPDBj update infoContact PDBjnumon