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8I5L
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Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies.
J.Virol., 98, 2024
8I5G
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BU of 8i5g by Molmil
Structure of human Nav1.7 in complex with PF-05089771
分子名称: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
著者Wu, Q.R, Yan, N.
登録日2023-01-25
公開日2023-06-14
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
8I5C
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Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
分子名称: Beta-2-microglobulin, MHC class I antigen (Fragment), TCR alpha chain, ...
著者Lu, D, Chen, Y, Jiang, M, Tan, S.G, Chai, Y, Gao, G.F.
登録日2023-01-24
公開日2023-08-23
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Nat Commun, 2023
8I5B
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Structure of human Nav1.7 in complex with bupivacaine
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wu, Q.R, Yan, N.
登録日2023-01-24
公開日2023-06-14
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural mapping of Na v 1.7 antagonists.
Nat Commun, 14, 2023
8I5A
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BU of 8i5a by Molmil
N-acetyl-(R)-beta-phenylalanine acylase, 2.75 angstrom resolution
分子名称: N-acetyl-(R)-beta-phenylalanine acylase
著者Kato, Y, Natsume, R.
登録日2023-01-24
公開日2023-03-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Expression, purification and crystallization of N-acetyl-(R)-beta-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme.
Acta Crystallogr.,Sect.F, 79, 2023
8I59
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N-acetyl-(R)-beta-phenylalanine acylase, selenomethionyl derivative
分子名称: N-acetyl-(R)-beta-phenylalanine acylase
著者Kato, Y, Natsume, R.
登録日2023-01-24
公開日2023-03-15
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献Expression, purification and crystallization of N-acetyl-(R)-beta-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme.
Acta Crystallogr.,Sect.F, 79, 2023
8I58
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BU of 8i58 by Molmil
Uroporphyrin I (UPI)-bound CfbA
分子名称: 3-[(1Z,9Z)-3,8,13,18-tetrakis(2-hydroxy-2-oxoethyl)-7,12,17-tris(3-hydroxy-3-oxopropyl)-21,23-dihydroporphyrin-2-yl]propanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I57
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Uroporphyrin III (UPIII)-bound CfbA
分子名称: 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I56
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CfbA S11T variant
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I55
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BU of 8i55 by Molmil
Wild-type CfbA at 1.99 angstrom resolution
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I50
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BU of 8i50 by Molmil
Crystal structure of DNA octamer containing GuNA[Me,Me]
分子名称: DNA (5'-D(*GP*(OIQ)P*GP*(BRU)P*AP*CP*AP*C)-3')
著者Aoyama, H, Obika, S, Yamaguchi, T.
登録日2023-01-21
公開日2023-08-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids.
Nucleic Acids Res., 51, 2023
8I4S
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BU of 8i4s by Molmil
the complex structure of SARS-CoV-2 Mpro with D8
分子名称: 3-(4-fluoranyl-3-methyl-phenyl)-2-(2-methylpropyl)-5,6,7-tris(oxidanyl)quinazolin-4-one, ORF1a polyprotein
著者Lu, M.
登録日2023-01-21
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of quinazolin-4-one-based non-covalent inhibitors targeting the severe acute respiratory syndrome coronavirus 2 main protease (SARS-CoV-2 M pro ).
Eur.J.Med.Chem., 257, 2023
8I4Q
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BU of 8i4q by Molmil
Crystal structure of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-phosphogluconate dehydrogenase, decarboxylating, ...
著者Yu, H, Kim, K.-J.
登録日2023-01-20
公開日2023-07-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of 6-Phosphogluconate Dehydrogenase from Corynebacterium glutamicum.
J Microbiol Biotechnol., 33, 2023
8I4P
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BU of 8i4p by Molmil
crystal structure of Acyl-CoA dehydrogenase from Thermobifida fusca
分子名称: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Choi, M, Kim, K.-J.
登録日2023-01-20
公開日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of Acyl-CoA dehydrogenase from Thermobifida fusca
To Be Published
8I4K
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BU of 8i4k by Molmil
Structure of Azami Red1.0, a red fluorescent protein engineered from Azami Green
分子名称: Azami Red1.0, CALCIUM ION
著者Otsubo, S, Takekawa, N, Imamura, H, Imada, K.
登録日2023-01-19
公開日2023-11-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Red fluorescent proteins engineered from green fluorescent proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
8I4J
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BU of 8i4j by Molmil
Structure of wild-type Azami Green from Galaxea fascicularis
分子名称: Azami-Green
著者Otsubo, S, Takekawa, N, Imamura, H, Imada, K.
登録日2023-01-19
公開日2023-11-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Red fluorescent proteins engineered from green fluorescent proteins.
Proc.Natl.Acad.Sci.USA, 120, 2023
8I4D
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BU of 8i4d by Molmil
X-ray structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex at 100K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CALCIUM ION, ...
著者Yano, N, Kondo, T, Kusaka, K, Yamada, T, Arakawa, T, Sakamoto, T, Fushinobu, S.
登録日2023-01-19
公開日2024-01-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Charge neutralization and beta-elimination cleavage mechanism of family 42 L-rhamnose-alpha-1,4-D-glucuronate lyase revealed using neutron crystallography.
J.Biol.Chem., 300, 2024
8I48
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BU of 8i48 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in closed state
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHLORIDE ION, Proton-gated ion channel
著者Bharambe, N, Li, Z, Basak, S.
登録日2023-01-18
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I47
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BU of 8i47 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 5.5
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
著者Bharambe, N, Li, Z, Basak, S.
登録日2023-01-18
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I42
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BU of 8i42 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 7.5
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
著者Bharambe, N, Li, Z, Basak, S.
登録日2023-01-18
公開日2024-04-10
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (2.92 Å)
主引用文献Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I41
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BU of 8i41 by Molmil
Cryo-EM structure of nanodisc (asolectin) reconstituted GLIC at pH 7.5
分子名称: DIUNDECYL PHOSPHATIDYL CHOLINE, Proton-gated ion channel
著者Bharambe, N, Li, Z, Basak, S.
登録日2023-01-18
公開日2024-04-10
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I40
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BU of 8i40 by Molmil
Crystal structure of ASCT from Trypanosoma brucei in complex with CoA.
分子名称: ACETATE ION, CALCIUM ION, COENZYME A, ...
著者Mochizuki, K, Inaoka, D.K, Fukuda, K, Kurasawa, H, Iyoda, K, Nakai, U, Harada, S, Balogun, E.O, Mazet, M, Millerioux, Y, Bringaud, F, Boshart, M, Hirayama, K, Kita, K, Shiba, T.
登録日2023-01-18
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal structure of ligand complexes of ASCT from Trypanosoma brucei and molecular mechanism in comparison with mammalian SCOT.
To Be Published
8I3Y
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BU of 8i3y by Molmil
Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA.
分子名称: CALCIUM ION, SUCCINIC ACID, SUCCINYL-COENZYME A, ...
著者Mochizuki, K, Inaoka, D.K, Fukuda, K, Kurasawa, H, Iyoda, K, Nakai, U, Harada, S, Balogun, E.O, Mazet, M, Millerioux, Y, Bringaud, F, Boshart, M, Hirayama, K, Kita, K, Shiba, T.
登録日2023-01-18
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA.
To Be Published
8I3J
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Crystal structure of human inner-arm dynein heavy chain d stalk and microtubule binding domain
分子名称: Dynein axonemal heavy chain 1
著者Ko, S, Yu, J, Toda, A, Tanaka, H, Kurisu, G.
登録日2023-01-17
公開日2023-08-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Crystal structure of the stalk region of axonemal inner-arm dynein-d reveals unique features in the coiled-coil and microtubule-binding domain.
Febs Lett., 597, 2023
8I34
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The crystal structure of EPD-BCP1 from a marine sponge
分子名称: (2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E},16~{E})-4,8,13,17-tetramethyl-3-oxidanyl-19-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]-1-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-2,4,6,8,10,12,14,16-octaen-18-yn-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ASTAXANTHIN, ...
著者Shomura, Y, Kawasaki, S.
登録日2023-01-16
公開日2023-08-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献An ependymin-related blue carotenoprotein decorates marine blue sponge.
J.Biol.Chem., 299, 2023

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件を2024-08-07に公開中

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