PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

---

8OUW	Cryo-EM structure of CMG helicase bound to TIM-1/TIPN-1 and homodimeric DNSN-1 on fork DNA (Caenorhabditis elegans) 分子名称: Cell division control protein 45 homolog, DNA Lagging Strand Template, DNA Leading Strand Template, ... 著者 Jenkyn-Bedford, M, Yeeles, J.T.P, Labib, K.P.M. 登録日 2023-04-25 公開日 2023-08-16 最終更新日 2023-10-04 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 DNSN-1 recruits GINS for CMG helicase assembly during DNA replication initiation in Caenorhabditis elegans. Science, 381, 2023
4KHN	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ... 著者 Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. 登録日 2013-04-30 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
8TLL	CDCA7 (Mouse) Binds Non-B-form 26-mer DNA oligo 分子名称: 1,2-ETHANEDIOL, Cell division cycle-associated protein 7, DNA (26-MER), ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2023-07-26 公開日 2024-08-21 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA. Biorxiv, 2023
8TLJ	CDCA7 (Mouse) Binds Non-B-form 32-mer DNA oligo Containing a 5mC 分子名称: 1,2-ETHANEDIOL, Cell division cycle-associated protein 7, DNA (32-MER), ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2023-07-26 公開日 2024-08-21 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA. Biorxiv, 2023
8TLK	CDCA7 (Human) Binds Non-B-form 32-mer DNA oligo Containing a 5mC 分子名称: 1,2-ETHANEDIOL, Cell division cycle-associated protein 7, DNA (32-MER), ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2023-07-26 公開日 2024-08-21 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA. Biorxiv, 2023
8TLH	CDCA7 (Mouse) Binds Non-B-form 32-mer DNA oligo 分子名称: 1,2-ETHANEDIOL, Cell division cycle-associated protein 7, DNA (32-MER), ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2023-07-26 公開日 2024-08-21 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA. Biorxiv, 2023
8TLG	CDCA7 (Mouse) Binds Non-B-form 34-mer DNA oligo 分子名称: 1,2-ETHANEDIOL, Cell division cycle-associated protein 7, DNA (34-MER), ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2023-07-26 公開日 2024-08-21 最終更新日 2024-08-28 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 The ICF syndrome protein CDCA7 harbors a unique DNA-binding domain that recognizes a CpG dyad in the context of a non-B DNA. Biorxiv, 2023
1RAM	A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3'), PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) 著者 Chen, Y.-Q, Ghosh, S, Ghosh, G. 登録日 1997-11-22 公開日 1998-05-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A novel DNA recognition mode by the NF-kappa B p65 homodimer. Nat.Struct.Biol., 5, 1998
4M3W	RB69 DNA polymerase ternary complex with dT/dG at position n-4 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3Z	RB69 DNA polymerase ternary complex with dG/dT at position n-2 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M41	RB69 DNA polymerase ternary complex with dG/dT at position n-3 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3X	RB69 DNA polymerase ternary complex with dT/dG at position n-5 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M42	RB69 DNA polymerase ternary complex with dG/dT at position n-4 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
2ITL	The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp) 分子名称: 24-nt PEN element of the SV40 DNA origin, large T antigen 著者 Bochkareva, E, Seitova, A, Bochkarev, A. 登録日 2006-10-19 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA Embo J., 25, 2006
3CFR	Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 分子名称: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3'), ... 著者 Wang, J, Klimenko, D, Wang, M, Steitz, T.A, Konigsberg, W.H. 登録日 2008-03-04 公開日 2009-03-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Insights into base selectivity from the structures of an RB69 DNA Polymerase triple mutant To be Published
4M3R	RB69 DNA polymerase ternary complex with dT/dG at position n-1 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M45	RB69 DNA polymerase ternary complex with dG/dT at position n-5 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3U	RB69 DNA polymerase ternary complex with dT/dG at position n-3 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3T	RB69 DNA polymerase ternary complex with dT/dG at position n-2 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3Y	RB69 DNA polymerase ternary complex with dG/dT at position n-1 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
3EYZ	Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form) 分子名称: 5'-D(*DAP*DTP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DGP*DA)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DGP*DC)-3', DNA polymerase I, ... 著者 Warren, J.J, Wu, E.Y, Golosov, A.A, Karplus, M, Beese, L.S. 登録日 2008-10-22 公開日 2009-11-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The Mechanism of the Translocation Step in DNA Replication by DNA Polymerase I: A Computer Simulation Analysis. Structure, 18, 2010
5MGA	Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage 分子名称: CRISPR-associated endonuclease Cpf1, DNA (26-MER), DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ... 著者 Montoya, G, Stella, S. 登録日 2016-11-21 公開日 2017-06-21 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage. Nature, 546, 2017
1WYW	Crystal Structure of SUMO1-conjugated thymine DNA glycosylase 分子名称: CHLORIDE ION, G/T mismatch-specific thymine DNA glycosylase, MAGNESIUM ION, ... 著者 Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. 登録日 2005-02-17 公開日 2005-06-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of thymine DNA glycosylase conjugated to SUMO-1. Nature, 435, 2005
1C0W	CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN 分子名称: COBALT (II) ION, DIPHTHERIA TOXIN REPRESSOR, DNA (5'-D(P*AP*TP*TP*AP*GP*GP*TP*TP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*AP*AP*T)-3'), ... 著者 Pohl, E, Holmes, R.K, Hol, W.G. 登録日 1999-07-22 公開日 2000-07-22 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain. J.Mol.Biol., 292, 1999
4FLT	Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA polymerase 1, GLYCEROL, ... 著者 Gouge, J, Delarue, M. 登録日 2012-06-15 公開日 2012-08-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Molecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase. J.Mol.Biol., 423, 2012

<144145146147148149150151152153154155156157158159>