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8PDN
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Spiral of assembled human metapneumovirus (HMPV) N-RNA
分子名称: Nucleoprotein, RNA
著者Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M.
登録日2023-06-12
公開日2023-12-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
Nat Commun, 14, 2023
8PDO
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BU of 8pdo by Molmil
Local refinement of dimeric human metapneumovirus (HMPV) N-RNA
分子名称: Nucleoprotein, RNA
著者Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M.
登録日2023-06-12
公開日2023-12-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
Nat Commun, 14, 2023
8PDL
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BU of 8pdl by Molmil
10-mer ring of human metapneumovirus (HMPV) N-RNA
分子名称: Nucleoprotein, RNA
著者Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M.
登録日2023-06-12
公開日2023-12-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
Nat Commun, 14, 2023
8PDS
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BU of 8pds by Molmil
Local refinement of dimeric HMPV N-RNA bound to the C-terminal region of P
分子名称: Nucleoprotein, Phosphoprotein, RNA
著者Whitehead, J.D, Decool, H, Leyrat, C, Carrique, L, Fix, J, Eleouet, J.F, Galloux, M, Renner, M.
登録日2023-06-12
公開日2023-12-06
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
Nat Commun, 14, 2023
6BX7
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BU of 6bx7 by Molmil
Crystal Structure of Human Protocadherin-1 EC1-4
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Protocadherin-1
著者Modak, D, Sotomayor, M.
登録日2017-12-17
公開日2018-12-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Identification of an adhesive interface for the non-clustered delta 1 protocadherin-1 involved in respiratory diseases.
Commun Biol, 2, 2019
5H46
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BU of 5h46 by Molmil
Mycobacterium smegmatis Dps1 mutant - F47E
分子名称: DNA protection during starvation protein, FE (II) ION
著者Williams, S.M, Chandran, A.V, Vijayan, M, Chatterji, D.
登録日2016-10-31
公開日2017-09-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献A Mutation Directs the Structural Switch of DNA Binding Proteins under Starvation to a Ferritin-like Protein Cage.
Structure, 25, 2017
6GRC
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BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
分子名称: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
著者Lilley, D.M.J, Liu, Y, Freeman, D.J.
登録日2018-06-11
公開日2018-09-26
最終更新日2019-02-13
実験手法X-RAY DIFFRACTION (2.452 Å)
主引用文献A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
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eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
分子名称: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
著者Lilley, D.M.J, Liu, Y, Freeman, D.J.
登録日2018-06-11
公開日2018-09-26
最終更新日2018-11-28
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6NHV
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Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold
分子名称: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP
著者Liu, Y, Huynh, D, Yeates, T.O.
登録日2018-12-24
公開日2019-05-08
最終更新日2019-11-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
486D
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BU of 486d by Molmil
X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES
分子名称: 900 STEM-LOOP OF 16S RRNA IN THE 70S RIBOSOME, A-SITE CODON OF 70S RIBOSOME, A-SITE TRNA OF 70S RIBOSOME, ...
著者Cate, J.H, Yusupov, M.M, Yusupova, G.Zh, Earnest, T.N, Noller, H.F.
登録日1999-09-09
公開日1999-10-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (7.5 Å)
主引用文献X-ray crystal structures of 70S ribosome functional complexes.
Science, 285, 1999
8R7D
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BU of 8r7d by Molmil
Complex of rice blast (Magnaporthe oryzae) mutant effector protein PWL2-SNDE with the HMA domain of OsHIPP43 from rice (Oryza sativa)
分子名称: Os01g0507700 protein, Pwl2 protein
著者Zdrzalek, R, Banfield, M.J.
登録日2023-11-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Bioengineering a plant NLR immune receptor with a robust recognition interface towards a conserved fungal pathogen effector
To Be Published
8R7A
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BU of 8r7a by Molmil
Complex of rice blast (Magnaporthe oryzae) effector protein PWL2 with the HMA domain of OsHIPP43 from rice (Oryza sativa)
分子名称: Os01g0507700 protein, Pwl2 protein
著者Zdrzalek, R, Banfield, M.J.
登録日2023-11-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Bioengineering a plant NLR immune receptor with a robust recognition interface towards a conserved fungal pathogen effector
To Be Published
4B3Q
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BU of 4b3q by Molmil
Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface
分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, P51 RT, PRIMER DNA, ...
著者Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (5 Å)
主引用文献Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation
Nat.Struct.Mol.Biol., 20, 2013
4MSV
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BU of 4msv by Molmil
Crystal structure of FASL and DcR3 complex
分子名称: GLYCEROL, MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 6, ...
著者Liu, W, Ramagopal, U.A, Zhan, C, Bonanno, J.B, Bhosle, R.C, Nathenson, S.G, Almo, S.C, Atoms-to-Animals: The Immune Function Network (IFN), New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-09-18
公開日2013-11-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Complex of Human FasL and Its Decoy Receptor DcR3.
Structure, 24, 2016
6DXG
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BU of 6dxg by Molmil
amidobenzimidazole (ABZI) STING agonists
分子名称: 2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-1-[(2R)-2-hydroxy-2-phenylethyl]-1H-benzimidazole-5-carboxamide, CALCIUM ION, Stimulator of interferon protein
著者Concha, N.O.
登録日2018-06-28
公開日2018-11-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.905 Å)
主引用文献Design of amidobenzimidazole STING receptor agonists with systemic activity.
Nature, 564, 2018
6A06
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BU of 6a06 by Molmil
Structure of pSTING complex
分子名称: SULFATE ION, Stimulator of interferon genes protein, cGAMP
著者Yuan, Z.L, Shang, G.J, Cong, X.Y, Gu, L.C.
登録日2018-06-05
公開日2019-06-19
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structures of porcine STINGCBD-CDN complexes reveal the mechanism of ligand recognition and discrimination of STING proteins.
J.Biol.Chem., 294, 2019
6A04
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BU of 6a04 by Molmil
Structure of pSTING complex
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), SULFATE ION, Stimulator of interferon genes protein
著者Yuan, Z.L, Shang, G.J, Cong, X.Y, Gu, L.C.
登録日2018-06-05
公開日2019-06-19
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of porcine STINGCBD-CDN complexes reveal the mechanism of ligand recognition and discrimination of STING proteins.
J.Biol.Chem., 294, 2019
1A80
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Native 2,5-DIKETO-D-GLUCONIC acid reductase a from CORYNBACTERIUM SP. complexed with nadph
分子名称: 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE A, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Khurana, S, Powers, D.B, Anderson, S, Blaber, M.
登録日1998-03-31
公開日1999-03-30
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of 2,5-diketo-D-gluconic acid reductase A complexed with NADPH at 2.1-A resolution.
Proc.Natl.Acad.Sci.USA, 95, 1998
5L32
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Crystal structure of the Zn-RIDC1 complex bearing six interfacial disulfide bonds
分子名称: HEME C, HEXAETHYLENE GLYCOL, Soluble cytochrome b562, ...
著者Churchfield, L.A, Tezcan, F.A.
登録日2016-08-02
公開日2016-11-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds.
J.Am.Chem.Soc., 138, 2016
6A8D
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BU of 6a8d by Molmil
Crystal Structure of Chlamydomonas reinhardtii ARF
分子名称: ARF/SAR superfamily small monomeric GTP binding protein, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Kumari, S, Goel, M, Kateriya, S, Sharma, P.
登録日2018-07-06
公開日2019-07-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Crystal structure of Chlamydomonas reinhardtii Arf
To Be Published
6AKF
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Crystal structure of mouse claudin-3 P134A mutant in complex with C-terminal fragment of Clostridium perfringens enterotoxin
分子名称: Claudin-3, Heat-labile enterotoxin B chain
著者Nakamura, S, Irie, K, Fujiyoshi, Y.
登録日2018-08-31
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
6A03
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Structure of pSTING complex
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, SULFATE ION, Stimulator of interferon genes protein
著者Yuan, Z.L, Shang, G.J, Cong, X.Y, Gu, L.C.
登録日2018-06-05
公開日2019-06-19
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.597 Å)
主引用文献Crystal structures of porcine STINGCBD-CDN complexes reveal the mechanism of ligand recognition and discrimination of STING proteins.
J.Biol.Chem., 294, 2019
6A05
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Structure of pSTING complex
分子名称: 2-amino-9-[(2R,3R,3aR,5S,7aS,9R,10R,10aR,12R,14aS)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, SULFATE ION, Stimulator of interferon genes protein
著者Yuan, Z.L, Shang, G.J, Cong, X.Y, Gu, L.C.
登録日2018-06-05
公開日2019-06-19
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of porcine STINGCBD-CDN complexes reveal the mechanism of ligand recognition and discrimination of STING proteins.
J.Biol.Chem., 294, 2019
6ZRB
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Crystal structure of SMYD3 conjugate with piperidine-based covalent inhibitor EM127
分子名称: ACETATE ION, Histone-lysine N-methyltransferase SMYD3, N-[1-(2-Chloroacetyl)piperidin-4-yl]-5-cyclopropyl-1,2-oxazole-3-carboxamide, ...
著者Talibov, V.O, Eriksson, D.
登録日2020-07-13
公開日2022-07-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Discovery of the 4-aminopiperidine-based compound EM127 for the site-specific covalent inhibition of SMYD3
Eur.J.Med.Chem., 2022
6AKG
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Crystal structure of mouse claudin-3 P134G mutant in complex with C-terminal fragment of Clostridium perfringens enterotoxin
分子名称: Claudin-3, Heat-labile enterotoxin B chain
著者Nakamura, S, Irie, K, Fujiyoshi, Y.
登録日2018-08-31
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (4.3 Å)
主引用文献Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019

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