PDB: 532 件ウェブページステータス検索Chemie searchBIRD

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2L4L	Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC 分子名称: 5'-D(*CP*TP*GP*G)-3', HIV-1 nucleocapsid protein NCp7, ZINC ION 著者 Bazzi, A, Zargarian, L, Chaminade, F, Boudier, C, De Rocquigny, H, Rene, B, Mely, Y, Fosse, P, Mauffret, O. 登録日 2010-10-08 公開日 2010-12-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC. Nucleic Acids Res., 39, 2011
1HHX	Solution structure of LNA3:RNA hybrid 分子名称: 5- D(*CP*+TP*GP*AP*+TP*AP*+TP*GP*C) -3, 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 著者 Petersen, M, Bondensgaard, K, Wengel, J, Jacobsen, J.P. 登録日 2000-12-29 公開日 2002-05-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Locked Nucleic Acid (Lna) Recognition of RNA: NMR Solution Structures of Lna:RNA Hybrids J.Am.Chem.Soc., 124, 2002
1NAO	SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA/RNA (5'-R(*OMGP*OMUP*OMC)-D(P*AP*TP*CP*T)-R(P*OMCP*OMC)-3'), RNA (5'-R(*GP*GP*AP*GP*AP*UP*GP*AP*C)-3') 著者 Nishizaki, T, Iwai, S, Ohtsuka, E, Nakamura, H. 登録日 1996-03-29 公開日 1997-01-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the center. Biochemistry, 36, 1997
1MRC	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES 分子名称: IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), IMIDAZOLE, ... 著者 Pokkuluri, P.R, Cygler, M. 登録日 1994-06-13 公開日 1995-02-14 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1MRD	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES 分子名称: IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), IMIDAZOLE, ... 著者 Pokkuluri, P.R, Cygler, M. 登録日 1994-06-13 公開日 1995-02-14 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1MRF	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES 分子名称: 2'-DEOXYINOSINE-5'-MONOPHOSPHATE, IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), ... 著者 Pokkuluri, P.R, Cygler, M. 登録日 1994-06-13 公開日 1995-02-14 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1HHW	Solution structure of LNA1:RNA hybrid 分子名称: 5- D(*CP*TP*GP*AP*+TLNP*AP*TP*GP*C) -3, 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 著者 Petersen, M, Bondensgaard, K, Wengel, J, Jacobsen, J.P. 登録日 2000-12-29 公開日 2002-05-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Locked Nucleic Acid (Lna) Recognition of RNA: NMR Solution Structures of Lna:RNA Hybrids J.Am.Chem.Soc., 124, 2002
1OVF	NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex 分子名称: (5'-D(*CP*CP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3'), ACTINOMYCIN D 著者 Chin, K.-H, Chou, S.-H, Chen, F.-M. 登録日 2003-03-26 公開日 2003-05-27 最終更新日 2024-07-10 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the Actd-5'-Ccgtt(3)Gtgg-3' Complex: Drug Interaction with Tandem G.T Mismatches and Hairpin Loop Backbone. Nucleic Acids Res., 31, 2003
1MRE	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES 分子名称: GUANOSINE-5'-DIPHOSPHATE, IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), ... 著者 Pokkuluri, P.R, Cygler, M. 登録日 1994-06-13 公開日 1995-02-14 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1P4Z	Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions 分子名称: 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3', SODIUM ION 著者 Hays, F.A, Vargason, J.M, Ho, P.S. 登録日 2003-04-24 公開日 2003-09-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Effect of Sequence on the Conformation of DNA Holliday Junctions Biochemistry, 42, 2003
1OSR	Structural study of dna duplex containaing a n-(2-deoxy-beta-erytho-pentofuranosyl) formamide frameshift by nmr and restrained molecular dynamics 分子名称: 5'-D(*AP*GP*GP*AP*CP*CP*AP*CP*G)-3', 5'-D(*CP*GP*TP*GP*GP*(2DF)P*TP*CP*CP*T)-3' 著者 Maufrais, C, Fazakerley, G.V, Cadet, J, Boulard, Y. 登録日 2003-03-20 公開日 2003-10-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics. Nucleic Acids Res., 31, 2003
213D	CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR 分子名称: DNA (5'-D(*CP*CP*IP*GP*GP*CP*CP*(5CM)P*GP*G)-3') 著者 Ramakrishnan, B, Sundaralingam, M. 登録日 1995-06-28 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair. Biophys.J., 69, 1995
214D	THE SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A SINGLE 2'-O-METHYL-BETA-D-ARAT 分子名称: DNA (5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*AP*(T41)P*AP*TP*GP*CP*G)-3') 著者 Gotfredsen, C.H, Spielmann, H.P, Wengel, J, Jacobsen, J.P. 登録日 1995-07-07 公開日 1995-10-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a DNA duplex containing a single 2'-O-methyl-beta-D-araT: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Bioconjug.Chem., 7, 1996
1BW7	SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A REPLICABLE DIFLUOROTOLUENE-ADENINE PAIR 分子名称: DNA (5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*AP*CP*AP*AP*TP*GP*CP*G)-3') 著者 Guckian, K.M, Krugh, T.R, Kool, E.T. 登録日 1998-09-30 公開日 1998-10-07 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair. Nat.Struct.Biol., 5, 1998
1D59	CRYSTAL STRUCTURE OF 4-STRANDED OXYTRICHA TELOMERIC DNA 分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') 著者 Kang, C, Zhang, X, Ratliff, R, Moyzis, R, Rich, A. 登録日 1992-02-25 公開日 1993-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of four-stranded Oxytricha telomeric DNA. Nature, 356, 1992
1DXN	The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes 分子名称: DNA/RNA (5'-D(*CP*GP*CP)-R(*AP*AP*AP)-D(*TP*TP*TP*GP*CP*G)-3') 著者 Hsu, S.-T, Chou, M.-T, Cheng, J.-W. 登録日 2000-01-11 公開日 2000-04-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Hydration of [D(Cgc)R(Aaa)D(Tttgcg)]2 J.Mol.Biol., 295, 2000
1E2I	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography 分子名称: 9-HYDROXYPROPYLADENINE, R-ISOMER, S-ISOMER, ... 著者 Vogt, J, Scapozza, L, Schulz, G.E. 登録日 2000-05-23 公開日 2000-11-06 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins, 41, 2000
1E2K	Kinetics and crystal structure of the wild-type and the engineered Y101F mutant of Herpes simplex virus type 1 thymidine kinase interacting with (North)-methanocarba-thymidine 分子名称: 1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE, SULFATE ION, THYMIDINE KINASE 著者 Vogt, J, Scapozza, L, Schulz, G.E. 登録日 2000-05-23 公開日 2000-08-19 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Kinetics and Crystal Structure of the Wild-Type and the Engineered Y101F Mutant of Herpes Simplex Virus Type 1 Thymidine Kinase Interacting with (North)-Methanocarba-Thymidine Biochemistry, 39, 2000
1E2J	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography 分子名称: SULFATE ION, THYMIDINE, THYMIDINE KINASE 著者 Vogt, J, Scapozza, L, Schulz, G.E. 登録日 2000-05-23 公開日 2000-11-06 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins: Struct.,Funct., Genet., 41, 2000
1E2H	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography 分子名称: SULFATE ION, THYMIDINE KINASE 著者 Vogt, J, Scapozza, L, Schulz, G.E. 登録日 2000-05-23 公開日 2000-11-06 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins: Struct.,Funct., Genet., 41, 2000
1DN8	STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3') 著者 Brennan, R.G, Westhof, E, Sundaralingam, M. 登録日 1987-05-12 公開日 1988-04-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine. J.Biomol.Struct.Dyn., 3, 1986
1D63	CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES 分子名称: BERENIL, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION 著者 Brown, D.G, Sanderson, M.R, Garman, E, Neidle, S. 登録日 1992-03-02 公開日 1993-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a berenil-d(CGCAAATTTGCG) complex. An example of drug-DNA recognition based on sequence-dependent structural features. J.Mol.Biol., 226, 1992
1D46	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Quintana, J.R, Lipanov, A.A, Dickerson, R.E. 登録日 1991-06-04 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1D44	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Quintana, J.R, Lipanov, A.A, Dickerson, R.E. 登録日 1991-06-04 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1CR3	SOLUTION CONFORMATION OF THE (+)TRANS-ANTI-BENZO[G]CHRYSENE-DA ADDUCT OPPOSITE DT IN A DNA DUPLEX 分子名称: BENZO[G]CHRYSENE, DNA (5'-D(*CP*TP*CP*TP*CP*AP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*TP*GP*AP*GP*AP*G)-3') 著者 Suri, A.K, Mao, B, Amin, S, Geacintov, N.E, Patel, D.J. 登録日 1999-08-12 公開日 2000-02-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution conformation of the (+)-trans-anti-benzo[g]chrysene-dA adduct opposite dT in a DNA duplex. J.Mol.Biol., 292, 1999

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