PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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2MSG	Solid-state NMR structure of ubiquitin 分子名称: Ubiquitin 著者 Lakomek, N, Habenstein, B, Loquet, A, Shi, C, Giller, K, Wolff, S, Becker, S, Fasshuber, H, Lange, A. 登録日 2014-08-04 公開日 2015-02-18 最終更新日 2024-05-15 実験手法 SOLID-STATE NMR 主引用文献 Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR. Protein Sci., 24, 2015
2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum 分子名称: Ubiquitin-like protein 著者 Ye, K. 登録日 2014-06-22 公開日 2015-06-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
2N7D	Solution structure of the UBL domain of human Ddi2 分子名称: Protein DDI1 homolog 2 著者 Siva, M, Grantz Saskova, K, Veverka, V. 登録日 2015-09-08 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog. Sci Rep, 6, 2016
2NBD	Solution structure of V26A mutant of Ubiquitin at pH 6.0 分子名称: entity 著者 Surana, P, Das, R. 登録日 2016-02-04 公開日 2016-05-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain 分子名称: UV excision repair protein RAD23 著者 Chen, X, Walters, K.J. 登録日 2016-03-12 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NBE	Solution structure of V26A mutant of Ubiquitin at pH 2.0 分子名称: entity 著者 Surana, P, Das, R. 登録日 2016-02-04 公開日 2016-05-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Observing a late folding intermediate of Ubiquitin at atomic resolution by NMR Protein Sci., 25, 2016
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 分子名称: NEDD8, Protein KHNYN 著者 Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. 登録日 2015-09-14 公開日 2016-09-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2LRW	Solution structure of a ubiquitin-like protein from Trypanosoma brucei 分子名称: Ubiquitin, putative 著者 Wang, R, Wang, T, Liao, S, Zhang, J, Tu, X. 登録日 2012-04-13 公開日 2013-04-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of a ubiqutin-like protein from Trypanosoma bucei To be Published
2LJ5	Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings 分子名称: Ubiquitin 著者 De Simone, A, Montalvao, R, Vendruscolo, M. 登録日 2011-09-06 公開日 2012-07-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Determination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings. J.Biomol.Nmr, 53, 2012
2L3Z	Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin 分子名称: Ubiquitin 著者 Huber, M, Hiller, S, Schanda, P, Ernst, M, Bockmann, A, Verel, R, Meier, B.H. 登録日 2010-09-27 公開日 2011-02-16 最終更新日 2024-05-01 実験手法 SOLID-STATE NMR 主引用文献 A Proton-Detected 4D Solid-State NMR Experiment for Protein Structure Determination. Chemphyschem, 12, 2011
2N13	Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb 分子名称: Ubiquitin, Unconventional myosin-VI 著者 He, F, Walters, K. 登録日 2015-03-20 公開日 2016-03-09 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains. Cell Rep, 14, 2016
2LD9	Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs 分子名称: Ubiquitin 著者 Kumar, D, Hosur, R. 登録日 2011-05-18 公開日 2011-06-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 AUTOBA: Automation of Backbone Assignment from HN(C)N Suite of Experiments To be Published
2L7R	Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166 分子名称: Ubiquitin-like protein FUBI 著者 Lemak, A, Yee, A, Houliston, S, Semesi, A, Doherty, R, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC) 登録日 2010-12-20 公開日 2011-01-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution NMR structure of N-terminal Ubiquitin-like domain of FUBI, a ribosomal protein S30 precursor from Homo sapiens. NorthEast Structural Genomics consortium (NESG) target HR6166 To be Published
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin 分子名称: OTU domain-containing protein, Polyubiquitin-B 著者 Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. 登録日 2023-02-21 公開日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
8DMB	Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA 分子名称: MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ... 著者 Seiichi, H, Kappel, K, Zhang, F. 登録日 2022-07-08 公開日 2022-10-19 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA. Nature, 610, 2022
8E7O	CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN 分子名称: SULFATE ION, Ubiquitin 著者 Lemma, B.E, Fushman, D. 登録日 2022-08-24 公開日 2022-11-02 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
5D6J	Crystal structure of a mycobacterial protein 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Acyl-CoA synthase, MAGNESIUM ION, ... 著者 Li, W.J, Bi, L.J. 登録日 2015-08-12 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal structure of FadD32, an enzyme essential for mycolic acid biosynthesis in mycobacteria. Sci Rep, 5, 2015
5CVN	WDR48 (2-580):USP46~ubiquitin ternary complex 分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 46, WD repeat-containing protein 48, ... 著者 Harris, S.F, Yin, J. 登録日 2015-07-27 公開日 2015-10-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.36 Å) 主引用文献 Structural Insights into WD-Repeat 48 Activation of Ubiquitin-Specific Protease 46. Structure, 23, 2015
7M3Q	Structure of the Smurf2 HECT Domain with a High Affinity Ubiquitin Variant (UbV) 分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHLORIDE ION, ... 著者 Chowdhury, A, Singer, A.U, Ogunjimi, A.A, Teyra, J, Zhang, W, Sicheri, F, Sidhu, S.S. 登録日 2021-03-18 公開日 2021-04-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the Smurf2 HECT Domain with a High Affinity Ubiquitin Variant (UbV) To be published
4W9C	pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(oxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 2) 分子名称: (4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-[4-(1,3-oxazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ... 著者 Gadd, M.S, Hewitt, S, Galdeano, C, van Molle, I, Ciulli, A. 登録日 2014-08-27 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem., 57, 2014
4F8C	Structure of the Cif:Nedd8 complex - Yersinia pseudotuberculosis Cycle Inhibiting Factor in complex with human Nedd8 分子名称: 1,2-ETHANEDIOL, Cycle Inhibiting Factor, NEDD8 著者 Crow, A, Banfield, M. 登録日 2012-05-17 公開日 2012-06-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012
3UF8	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with a G95A surface mutation from Burkholderia pseudomallei complexed with FK506 分子名称: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2011-10-31 公開日 2011-11-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
4W9G	pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(3-methyl-4-(thiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6) 分子名称: (4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-[3-methyl-4-(1,3-thiazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ... 著者 Gadd, M.S, Soares, P, Galdeano, C, van Molle, I, Ciulli, A. 登録日 2014-08-27 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem., 57, 2014
4W9D	pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methyloxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3) 分子名称: (4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-[4-(4-methyl-1,3-oxazol-5-yl)benzyl]-L-prolinamide, Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, ... 著者 Gadd, M.S, Hewitt, S, Galdeano, C, van Molle, I, Ciulli, A. 登録日 2014-08-27 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem., 57, 2014
4FBJ	Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8 分子名称: CHLORIDE ION, Hypothetical protein, NEDD8 著者 Crow, A, Banfield, M.J. 登録日 2012-05-23 公開日 2012-06-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The molecular basis of Nedd8 deamidation by the bacterial effector protein Cif Proc.Natl.Acad.Sci.USA, 2012

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