PDB: 1466 件ウェブページステータス検索Chemie searchBIRD

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2MQJ	Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum 分子名称: Ubiquitin-like protein 著者 Ye, K. 登録日 2014-06-22 公開日 2015-06-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum To be Published
2NBU	Solution structure of the Rad23 ubiquitin-like (UBL) domain 分子名称: UV excision repair protein RAD23 著者 Chen, X, Walters, K.J. 登録日 2016-03-12 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structures of Rpn1 T1:Rad23 and hRpn13:hPLIC2 Reveal Distinct Binding Mechanisms between Substrate Receptors and Shuttle Factors of the Proteasome. Structure, 24, 2016
2NR2	The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins 分子名称: Ubiquitin 著者 Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M. 登録日 2006-11-01 公開日 2007-05-08 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins J.Biomol.Nmr, 37, 2007
2O6V	Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin 著者 Eddins, M.J, Wolberger, C. 登録日 2006-12-08 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH J.Mol.Biol., 367, 2007
2OJR	Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag 分子名称: TERBIUM(III) ION, Ubiquitin 著者 Silvaggi, N.R, Allen, K.N. 登録日 2007-01-13 公開日 2007-06-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination. J.Am.Chem.Soc., 129, 2007
2N7K	Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 分子名称: NEDD8, Protein KHNYN 著者 Santonico, E, Nepravishta, R, Mattioni, A, Valentini, E, Mandaliti, W, Procopio, R, Iannuccelli, M, Castagnoli, L, Polo, S, Paci, M, Cesareni, G. 登録日 2015-09-14 公開日 2016-09-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Unveiling the structural determinants of KIAA0323 binding preference for NEDD8 To be Published
2PEA	NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements 分子名称: Ubiquitin 著者 Ryabov, Y, Fushman, D. 登録日 2007-04-02 公開日 2007-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2N4F	EC-NMR Structure of Arabidopsis thaliana At2g32350 Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data. Northeast Structural Genomics Consortium target AR3433A 分子名称: uncharacterized protein AR3433A 著者 Tang, Y, Huang, Y.J, Hopf, T.A, Sander, C, Marks, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2015-06-17 公開日 2015-07-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Protein structure determination by combining sparse NMR data with evolutionary couplings. Nat.Methods, 12, 2015
2OOB	crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin 分子名称: E3 ubiquitin-protein ligase CBL-B, Ubiquitin 著者 Kozlov, G, Gehring, K. 登録日 2007-01-25 公開日 2007-02-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b. Mol.Cell, 27, 2007
2PE9	NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements 分子名称: Ubiquitin 著者 Ryabov, Y, Fushman, D. 登録日 2007-04-02 公開日 2007-07-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor. J.Am.Chem.Soc., 129, 2007
2N2K	Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand 分子名称: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin 著者 Liu, Z, Gong, Z, Tang, C. 登録日 2015-05-10 公開日 2015-07-08 最終更新日 2015-09-23 実験手法 SOLUTION NMR 主引用文献 Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife, 4, 2015
2M17	ubiquitin-like domain-containing C-terminal domain phosphatase (UBLCP1) 分子名称: Ubiquitin-like domain-containing CTD phosphatase 1 著者 Lee, W, Yun, J. 登録日 2012-11-19 公開日 2013-06-05 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution Structure and Rpn1 Interaction of the UBL Domain of Human RNA Polymerase II C-Terminal Domain Phosphatase. Plos One, 8, 2013
2MI8	Solution structure of lysine-free (K0) ubiquitin 分子名称: Ubiquitin 著者 Huang, T, Li, J.R, Byrd, A.R. 登録日 2013-12-09 公開日 2014-04-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of lysine-free (K0) ubiquitin. Protein Sci., 23, 2014
2MBE	Backbone 1H and 15N Chemical Shift Assignments for the first domain of FAT10 分子名称: Ubiquitin D 著者 Wang, W, Lim, L, Qin, H. 登録日 2013-07-30 公開日 2014-08-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Disruption of FAT10-MAD2 binding inhibits tumor progression. Proc.Natl.Acad.Sci.USA, 111, 2014
2MJ5	Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin 分子名称: Next to BRCA1 gene 1 protein, Polyubiquitin-C 著者 Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M. 登録日 2013-12-25 公開日 2014-04-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin. J.Biol.Chem., 289, 2014
2LWP	The NMR solution structure of the the ubiquitin homology domain of mouse BAG-1 分子名称: BAG family molecular chaperone regulator 1 著者 Huang, H, Yu, C. 登録日 2012-08-05 公開日 2013-06-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The NMR solution structure of the ubiquitin homology domain of Bcl-2-associated athanogene 1 (BAG-1-UBH) from Mus musculus. Biochem.Biophys.Res.Commun., 431, 2013
8A67	Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation) 分子名称: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ... 著者 Lange, S.M, Kulathu, Y. 登録日 2022-06-16 公開日 2023-02-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Comprehensive approach to study branched ubiquitin chains reveals roles for K48-K63 branches in VCP/p97-related processes Biorxiv, 2023
8T48	The N4BP1 CUE-like domain in complex with linear di-Ubiquitin 分子名称: Di-Ubiquitin, GLYCEROL, LITHIUM ION, ... 著者 Schubert, A.F, Harris, S.F. 登録日 2023-06-08 公開日 2024-03-13 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 N4BP1 coordinates ubiquitin-dependent crosstalk within the I kappa B kinase family to limit Toll-like receptor signaling and inflammation. Immunity, 57, 2024
8ADB	Viral tegument-like DUBs 分子名称: CITRIC ACID, Polyubiquitin-C, Wc-VDT1, ... 著者 Erven, I, Abraham, E.T, Hermanns, T, Baumann, U, Hofmann, K. 登録日 2022-07-08 公開日 2023-02-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins. Nat Commun, 13, 2022
8IPJ	Crystal structure of the Legionella effector protein MavL with ADPR-Ub 分子名称: MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE 著者 Ouyang, S, Guan, H. 登録日 2023-03-14 公開日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Crystal structure of the Legionella effector protein MavL with ADPR-Ub To Be Published
2QHO	Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin 分子名称: E3 ubiquitin-protein ligase EDD1, Ubiquitin 著者 Kozlov, G, Gehring, K. 登録日 2007-07-02 公開日 2007-09-25 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD. J.Biol.Chem., 282, 2007
7OJE	Crystal structure of the covalent complex between Tribolium castaneum deubiquitinase ZUP and Ubiquitin-PA 分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Lys-63-specific deubiquitinase ZUFSP, ... 著者 Pichlo, C, Hermanns, T, Hofmann, K, Baumann, U. 登録日 2021-05-14 公開日 2022-02-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A structural basis for the diverse linkage specificities within the ZUFSP deubiquitinase family. Nat Commun, 13, 2022
6WTG	SdeA DUB Domain in complex with Ubiquitin 分子名称: Ubiquitin, Ubiquitinating/deubiquitinating enzyme SdeA 著者 Kenny, S, Sheedlo, M, Das, C. 登録日 2020-05-02 公開日 2021-03-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA. Biochemistry, 60, 2021
2FNJ	Crystal structure of a B30.2/SPRY domain-containing protein GUSTAVUS in complex with Elongin B and Elongin C 分子名称: CG2944-PF, isoform F, Transcription elongation factor B polypeptide 1, ... 著者 Woo, J.S, Oh, B.H. 登録日 2006-01-11 公開日 2006-03-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and functional insights into the B30.2/SPRY domain Embo J., 25, 2006
6XA9	SARS CoV-2 PLpro in complex with ISG15 C-terminal domain propargylamide 分子名称: GLYCEROL, ISG15 CTD-propargylamide, Non-structural protein 3, ... 著者 Klemm, T, Calleja, D.J, Richardson, L.W, Lechtenberg, B.C, Komander, D. 登録日 2020-06-04 公開日 2020-06-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2. Embo J., 39, 2020

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