Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7QSO
DownloadVisualize
BU of 7qso by Molmil
Bovine complex I in lipid nanodisc, State 3 (Slack)
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
著者Chung, I, Bridges, H.R, Hirst, J.
登録日2022-01-13
公開日2022-05-25
最終更新日2022-09-28
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Cryo-EM structures define ubiquinone-10 binding to mitochondrial complex I and conformational transitions accompanying Q-site occupancy.
Nat Commun, 13, 2022
6F9Z
DownloadVisualize
BU of 6f9z by Molmil
Lysozyme crystallized in presence of 5 mM ammonium sulphate at pH 4.5
分子名称: CHLORIDE ION, Lysozyme C, SULFATE ION
著者Camara-Artigas, A.
登録日2017-12-15
公開日2018-05-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Orthorhombic lysozyme crystallization at acidic pH values driven by phosphate binding.
Acta Crystallogr D Struct Biol, 74, 2018
2IXD
DownloadVisualize
BU of 2ixd by Molmil
Crystal structure of the putative deacetylase BC1534 from Bacillus cereus
分子名称: ACETATE ION, LMBE-RELATED PROTEIN, ZINC ION
著者Fadouloglou, V.E, Bouriotis, V, Kokkinidis, M.
登録日2006-07-07
公開日2007-07-17
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Bczbp, a Zinc-Binding Protein from Bacillus Cereus
FEBS J., 274, 2007
6J9U
DownloadVisualize
BU of 6j9u by Molmil
Complex structure of Lactobacillus casei lactate dehydrogenase penta mutant with pyruvate
分子名称: L-lactate dehydrogenase, PYRUVIC ACID, SULFATE ION
著者Arai, K, Miyanaga, A, Uchikoba, H, Fushinobu, S, Taguchi, H.
登録日2019-01-24
公開日2019-02-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal structure of penta mutant of L-lactate dehydrogenase from Lactobacillus casei
To Be Published
2J7F
DownloadVisualize
BU of 2j7f by Molmil
Beta-glucosidase from Thermotoga maritima in complex with carboxylate- substituted glucoimidazole
分子名称: ACETATE ION, BETA-GLUCOSIDASE A, CALCIUM ION, ...
著者Gloster, T.M, Zechel, D, Vasella, A, Davies, G.J.
登録日2006-10-07
公開日2006-10-18
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Glycosidase Inhibition: An Assessment of the Binding of 18 Putative Transition-State Mimics.
J.Am.Chem.Soc., 129, 2007
3CIR
DownloadVisualize
BU of 3cir by Molmil
E. coli Quinol fumarate reductase FrdA T234A mutation
分子名称: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Tomasiak, T.M, Maklashina, E, Cecchini, G, Iverson, T.M.
登録日2008-03-11
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
J.Biol.Chem., 283, 2008
2VTF
DownloadVisualize
BU of 2vtf by Molmil
X-ray crystal structure of the Endo-beta-N-acetylglucosaminidase from Arthrobacter protophormiae E173Q mutant reveals a TIM barrel catalytic domain and two ancillary domains
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ENDO-BETA-N-ACETYLGLUCOSAMINIDASE, TRIETHYLENE GLYCOL
著者Ling, Z, Bingham, R.J, Suits, M.D.L, Moir, J.W.B, Fairbanks, A.J, Taylor, E.J.
登録日2008-05-14
公開日2009-03-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献The X-Ray Crystal Structure of an Arthrobacter Protophormiae Endo-Beta-N-Acetylglucosaminidase Reveals a (Beta/Alpha)(8) Catalytic Domain, Two Ancillary Domains and Active Site Residues Key for Transglycosylation Activity.
J.Mol.Biol., 389, 2009
2J88
DownloadVisualize
BU of 2j88 by Molmil
Hyaluronidase in complex with a monoclonal IgG Fab fragment
分子名称: FAB, HYALURONONGLUCOSAMINIDASE
著者Padavattan, S, Schirmer, T, Markovic-Housley, Z.
登録日2006-10-23
公開日2007-04-03
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Identification of a B-Cell Epitope of Hyaluronidase, a Major Bee Venom Allergen, from its Crystal Structure in Complex with a Specific Fab.
J.Mol.Biol., 368, 2007
6EY1
DownloadVisualize
BU of 6ey1 by Molmil
prolyl hydroxylase from Trichoplax adhaerens
分子名称: ACETATE ION, GLYCEROL, HIF prolyl hydroxylase, ...
著者McDonough, M.A, Boleininger, A.
登録日2017-11-10
公開日2018-10-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.199 Å)
主引用文献Born to sense: biophysical analyses of the oxygen sensing prolyl hydroxylase from the simplest animal Trichoplax adhaerens.
Hypoxia (Auckl), 6, 2018
6ASK
DownloadVisualize
BU of 6ask by Molmil
Crystal Structure of apo Flavin monooxygenase CmoJ (earlier YtnJ)
分子名称: Putative monooxygenase MoxC
著者Bhandari, D.M, Zhao, B, Li, P, Begley, T.P.
登録日2017-08-24
公開日2018-08-29
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Flavin mediated Pummerer type rearrangement in cysteine salvage pathway
To Be Published
4QO8
DownloadVisualize
BU of 4qo8 by Molmil
Lactate Dehydrogenase A in complex with substituted 3-Hydroxy-2-mercaptocyclohex-2-enone compound 104
分子名称: (5S)-2-[(2-chlorophenyl)sulfanyl]-5-(2,6-dichlorophenyl)-3-hydroxycyclohex-2-en-1-one, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Eigenbrot, C, Ultsch, M.
登録日2014-06-19
公開日2014-07-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Identification of substituted 3-hydroxy-2-mercaptocyclohex-2-enones as potent inhibitors of human lactate dehydrogenase.
Bioorg.Med.Chem.Lett., 24, 2014
4QOD
DownloadVisualize
BU of 4qod by Molmil
The value crystal structure of apo quinone reductase 2 at 1.35A
分子名称: GLYCEROL, Ribosyldihydronicotinamide dehydrogenase [quinone], ZINC ION
著者Serriere, J, Boutin, J.A, Isabet, T, Antoine, M, Ferry, G.
登録日2014-06-20
公開日2015-07-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献The value crystal structure of apo quinone reductase 2 at 1.35A
To be Published
3CP4
DownloadVisualize
BU of 3cp4 by Molmil
CRYSTAL STRUCTURE OF THE CYTOCHROME P450-CAM ACTIVE SITE MUTANT THR252ALA
分子名称: ADAMANTANE, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Raag, R, Poulos, T.L.
登録日1991-06-04
公開日1993-01-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the cytochrome P-450CAM active site mutant Thr252Ala.
Biochemistry, 30, 1991
2IC1
DownloadVisualize
BU of 2ic1 by Molmil
Crystal Structure of Human Cysteine Dioxygenase in Complex with Substrate Cysteine
分子名称: CYSTEINE, Cysteine dioxygenase type 1, FE (II) ION
著者Ye, S, Wu, X, Wei, L, Tang, D, Sun, P, Rao, Z.
登録日2006-09-12
公開日2006-12-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献An Insight into the Mechanism of Human Cysteine Dioxygenase: KEY ROLES OF THE THIOETHER-BONDED TYROSINE-CYSTEINE COFACTOR.
J.Biol.Chem., 282, 2007
6JEA
DownloadVisualize
BU of 6jea by Molmil
crystal structure of a beta-N-acetylhexosaminidase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-N-acetylhexosaminidase, ZINC ION
著者Chen, X, Wang, J.C, Liu, M.J, Yang, W.Y, Wang, Y.Z, Tang, R.P, Zhang, M.
登録日2019-02-04
公開日2019-03-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.275 Å)
主引用文献Crystallographic evidence for substrate-assisted catalysis of beta-N-acetylhexosaminidas from Akkermansia muciniphila.
Biochem. Biophys. Res. Commun., 511, 2019
7WDR
DownloadVisualize
BU of 7wdr by Molmil
Crystal structures of MeBglD2 in complex with various saccharides
分子名称: 4-nitrophenyl beta-D-glucopyranoside, Beta-glucosidase, SULFATE ION
著者Watanabe, M, Matsuzawa, T, Nakamichi, Y, Akita, H, Yaoi, K.
登録日2021-12-22
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides
Appl.Microbiol.Biotechnol., 106, 2022
7QQK
DownloadVisualize
BU of 7qqk by Molmil
TIR-SAVED effector bound to cA3
分子名称: RNA (5'-R(P*AP*AP*A)-3'), TIR_SAVED fusion protein
著者Spagnolo, L, White, M.F, Hogrel, G, Guild, A.
登録日2022-01-09
公開日2022-06-15
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cyclic nucleotide-induced helical structure activates a TIR immune effector.
Nature, 608, 2022
6JEQ
DownloadVisualize
BU of 6jeq by Molmil
Crystal structure of Pullulanase from Paenibacillus barengoltzii complex with beta-cyclodextrin
分子名称: CALCIUM ION, CHLORIDE ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
著者Wu, S.W, Yang, S.Q, Qin, Z, You, X, Huang, P, Jiang, Z.Q.
登録日2019-02-07
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Structural basis of carbohydrate binding in domain C of a type I pullulanase from Paenibacillus barengoltzii.
Acta Crystallogr D Struct Biol, 76, 2020
3IGU
DownloadVisualize
BU of 3igu by Molmil
Crystal structure of human alpha-N-acetylgalactosaminidase, covalent intermediate
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Clark, N.E, Garman, S.C.
登録日2009-07-28
公開日2009-10-20
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The 1.9 a structure of human alpha-N-acetylgalactosaminidase: The molecular basis of Schindler and Kanzaki diseases
J.Mol.Biol., 393, 2009
7WDP
DownloadVisualize
BU of 7wdp by Molmil
Crystal structures of MeBglD2 in complex with various saccharides
分子名称: Beta-glucosidase, SULFATE ION, alpha-D-glucopyranose, ...
著者Watanabe, M, Matsuzawa, T, Nakamichi, Y, Akita, H, Yaoi, K.
登録日2021-12-22
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Crystal structure of metagenomic beta-glycosidase MeBglD2 in complex with various saccharides
Appl.Microbiol.Biotechnol., 106, 2022
6FHV
DownloadVisualize
BU of 6fhv by Molmil
Crystal structure of Penicillium oxalicum Glucoamylase
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Roth, C, Moroz, O.V, Ariza, A, Friis, E.P, Davies, G.J, Wilson, K.S.
登録日2018-01-15
公開日2018-05-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insight into industrially relevant glucoamylases: flexible positions of starch-binding domains.
Acta Crystallogr D Struct Biol, 74, 2018
3IAM
DownloadVisualize
BU of 3iam by Molmil
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, reduced, 2 mol/ASU, with bound NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Sazanov, L.A, Berrisford, J.M.
登録日2009-07-14
公開日2009-09-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for the mechanism of respiratory complex I
J.Biol.Chem., 284, 2009
4LA4
DownloadVisualize
BU of 4la4 by Molmil
Crystal structure of native PnpB
分子名称: NAD(P)H dehydrogenase (quinone)
著者Su, J, Zhang, C, Li, N, Gu, L.
登録日2013-06-19
公開日2014-06-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of native PnpB
To be Published
6JGB
DownloadVisualize
BU of 6jgb by Molmil
Crystal structure of barley exohydrolaseI W286F mutant in complex with methyl 6-thio-beta-gentiobioside
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1, ...
著者Luang, S, Streltsov, V.A, Hrmova, M.
登録日2019-02-13
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases.
Nat Commun, 13, 2022
3IJL
DownloadVisualize
BU of 3ijl by Molmil
Structure of dipeptide epimerase from Bacteroides thetaiotaomicron complexed with L-Pro-D-Glu; nonproductive substrate binding.
分子名称: D-GLUTAMIC ACID, MAGNESIUM ION, Muconate cycloisomerase, ...
著者Fedorov, A.A, Fedorov, E.V, Lukk, T, Gerlt, J.A, Almo, S.C.
登録日2009-08-04
公開日2010-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily.
Proc.Natl.Acad.Sci.USA, 109, 2012

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon